A Database of Drosophila Genes & Genomes

FB2016_04, released July 28th, 2016
 

BLAST Database information

Database availability

Species Genome assembly Annotated genes Annotated proteins GLEANR CDS predictions GLEANR protein predictions Intergenic sequences Syntenic blocks
Drosophila ananassae X X X X
Drosophila biarmipes X
Drosophila bipectinata X
Drosophila elegans X
Drosophila erecta X X X X
Drosophila eugracilis X
Drosophila ficusphila X
Drosophila grimshawi X X X X
Drosophila kikkawai X
Drosophila melanogaster X X X X
Drosophila miranda X
Drosophila mojavensis X X X X
Drosophila persimilis X X X X
Drosophila pseudoobscura pseudoobscura X X X X X
Drosophila rhopaloa X
Drosophila sechellia X X X X
Drosophila simulans X X X X
Drosophila takahasii X
Drosophila virilis X X X X
Drosophila willistoni X X X X
Drosophila yakuba X X X X
Acromyrmex echinatior X
Acyrthosiphon pisum X
Aedes aegypti X
Anopheles darlingi X
Anopheles gambiae X
Apis florea X
Apis mellifera X
Atta cephalotes X
Bombus impatiens X
Bombus terrestris X
Bombyx mori X
Camponotus floridanus X
Culex quinquefasciatus X
Danaus plexippus X
Harpegnathos saltator X
Ixodes scapularis X
Linepithema humile X
Mayetiola destructor X
Megachile rotundata X
Nasonia giraulti X
Nasonia longicornis X
Nasonia vitripennis X
Pediculus humanus corporis X
Pogonomyrmex barbatus X
Rhipicephalus microplus X
Rhodnius prolixus X
Solenopsis invicta X
Tribolium castaneum X
Species Transposons - all annotated elements Transposons - canonical set GenBank sequences GenBank EST sequences GenBank GSS sequences GenBank protein sequences
Drosophila ananassae X X X X X
Drosophila biarmipes X X
Drosophila bipectinata X X
Drosophila elegans X X
Drosophila erecta X X X X
Drosophila eugracilis X X
Drosophila ficusphila X X
Drosophila grimshawi X X X X
Drosophila kikkawai X X
Drosophila melanogaster X X X X X X
Drosophila miranda X X X
Drosophila mojavensis X X X X
Drosophila persimilis X X X
Drosophila pseudoobscura pseudoobscura X X X X X
Drosophila rhopaloa
Drosophila sechellia X X X X
Drosophila simulans X X X X X
Drosophila takahashii
Drosophila virilis X X X X X
Drosophila willistoni X X X X X
Drosophila yakuba X X X X X
Acromyrmex echinator X X
Acyrthosiphon pisum X X X
Aedes aegypti X X X X
Anopheles darlingi X X X
Anopheles gambiae X X X X
Apis florea X X
Apis mellifera X X X X
Atta cephalotes X X
Bombus impatiens X X
Bombus terrestris X X
Bombyx mori X X X X
Camponotus floridanus X X X
Culex quinquefasciatus X X X
Danaus plexippus X X X
Harpegnathos saltator X
Ixodes scapularis X X X X
Linepithema humile X X
Mayetiola destructor X X
Nasonia giraulti X X X
Nasonia longicornis X X
Nasonia vitripennis X X X
Pediculus humanus corporis X X X
Pogonomyrmex barbatus X X
Rhipicephalus microplus X X X X
Rhodnius prolixus X X X
Solenopsis invicta X X
Tribolium castaneum X X X X

Database descriptions

Database Type Description
Genome assembly nucleotide Largest assembled unit. All non Drosophila assemblies are pulled from GenBank.
Annotated genes nucleotide FlyBase annotated genes
Annotated proteins protein FlyBase annotated proteins
GLEANR CDS predictions nucleotide GLEANR CDS predictions from the AAA group. This database will be folded into "Annotated genes" for each Drosophila species once FlyBase has integrated all the annotations. Check the availability table above for the current status or Contact FlyBase if you have further questions.
GLEANR protein predictions protein GLEANR protein predictions from the AAA group. This database will be folded into "Annotated proteins" for each Drosophila species once FlyBase has integrated all the annotations. Check the availability table above for the current status or Contact FlyBase if you have further questions.
Intergenic sequences nucleotide Intergenic sequences derived from the coordinates of FlyBase gene models.
Syntenic blocks nucleotide Regions/blocks of synteny between the species the database is listed under and another species, usually Dmel.
Transposons - all annotated elements nucleotide Any transposons annoated by FlyBase.
Transposons - canonical set nucleotide A consensus set of transposons derived from transposon_sequence_set.embl.txt.gz
Degenerate scaffolds nucleotide No longer available
GenBank nucleotide All GenBank sequences from the Core Nucleotide database for the species.
GenBank EST nucleotide All GenBank sequences from the EST division for the species.
GenBank GSS nucleotide All GenBank sequences from the GSS division for the species.
GenBank protein protein All GenBank protein sequences for the species.
UniProt protein No longer available.