Hello,
I would like to have some short DNA motif/sequences (at my wish) be graphically shown in the GBrowse, in a separate track. Well, it can be similar to the BLAST hit track, only my motifs are too short to go though the BLAST. I need this feature to visually estimate the frequency and location of given short motifs. Any idea how to make it happen?
Many thanks!
show motifs in GBrowse
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show motifs in GBrowse
by ABQ » Wed Mar 13, 2013 7:15 pm
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Re: show motifs in GBrowse
by Josh Goodman » Wed Mar 13, 2013 9:13 pm
I recommend you take a look at GBrowse 2.x that we just installed on Friday. It has better support for custom tracks and should let you do what you describe.
http://flybase.org/cgi-bin/gbrowse2/dmel/
See the tab labeled "Custom tracks".
Cheers,
Josh
http://flybase.org/cgi-bin/gbrowse2/dmel/
See the tab labeled "Custom tracks".
Cheers,
Josh
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