modENCODE expression query

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modENCODE expression query

Postby kborz1 » Tue Feb 19, 2013 3:07 pm

Hello,

I am trying to retrieve modENCODE data that is available on the FlyBase website for sets of multiple genes.
Is there a PostgreSQL command that will allow me to retrieve the equivalent of the following:
http://flybase.org/cgi-bin/serveHTdata. ... Bgn0004170

Thank you,
Kirill Borziak
kborz1
 
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Re: modENCODE expression query

Postby Josh Goodman » Wed Feb 20, 2013 3:27 pm

Hi Kirill,

We've got bulk files with expression levels for genes calculated from modENCODE developmental RNA-Seq and FlyAtlas anatomical array data here:
ftp://flybase.org/flybase/associated_fi ... .13.tar.gz

We're working on making the modENCODE tissue-specific RPKM calculations available at some point.

Cheers,
Josh
Josh Goodman
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Re: modENCODE expression query

Postby kborz1 » Wed Feb 20, 2013 5:14 pm

Thank you.
This is exactly what I was looking for.
kborz1
 
Posts: 2
Joined: Tue Feb 19, 2013 2:17 pm


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