batch BLAST?

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batch BLAST?

Postby Cadmium » Tue Oct 14, 2008 3:37 pm

Hi there,

I've been wondering if it is possibe to do BLAST analysis (on the FlyBase site) on batches of sequences?
Many thanks in advance!
Cadmium
 
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Re: batch BLAST?

Postby Josh Goodman » Fri Oct 17, 2008 2:23 pm

Not currently but this is in the works. If you have any particular features that you are looking for with this type of service please let us know.

Josh
Josh Goodman
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Re: batch BLAST?

Postby Cadmium » Tue Oct 21, 2008 4:44 pm

Yes, I have a bunch of unannotated sequences associated with microarray data. Now I am manually looking for what genes might be associated with them. Basically, what I would like to have is a batch search that would return a list of best hits for the seq-s I submitted, their links to genomic view and (ideally!) any indication of what gene vicinity the hits might be crossing. That's it. I don't ask for too much, do I?
Cadmium
 
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Joined: Thu Dec 20, 2007 1:13 pm


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