FlyBase Aberration Report: Dmel\Df(3L)ZN47

General Information

Symbol

Df(3L)ZN47

Species

D. melanogaster

Name

FlyBase ID

FBab0000006

Feature type

chromosomal_deletion

Computed Breakpoints include

64C;65C

Features within 64C--65C (Estimated cytology)

Genomic Maps

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Sequence coordinates

3L:5,012,058..5,129,943 (Df(3L)ZN47:bk1)

(Yamamoto et al., 2009.2.25)

3L:6,895,396..6,914,274 (Df(3L)ZN47:bk2)

(Yamamoto et al., 2009.2.25)

Member of large scale dataset(s)

Nature of Aberration

Cytological Order

Progenitor

P{A₂₂O₃₁}mfs(3)8¹

(Rawson, 1992)

Mutagen

gamma ray

(Rawson, 1992)

Class of aberration (relative to wild type)

chromosomal_deletion

(FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Rawson, 1992)

Breakpoints

64C;65C

(Rawson, 1992)

Causes alleles

Carries alleles

Transposon Insertions

Formalized genetic data

Rpd3 << bk1 << Srp54k << sfl << bk2 << sgl

Genetic mapping information

Comments

Comments on Cytology

The left Df(3L)ZN47 breakpoint lies in CG12027 or CG4597 or in the region between them, and lies in the range 3L:5012058..5123043 (R5) (predicted cytology: 64C4-6).

(Yamamoto et al., 2009.2.25)

The right Df(3L)ZN47 breakpoint lies within Prat2 or CG14820 or in the region between them, and lies in the range 3R:6888496..6907374 (R5) (predicted cytology: 65D2).

(Yamamoto et al., 2009.2.25)

All limits from polytene analysis (FBrf0075338)

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

black-hole

(Ghabrial et al., 2011)

Bre1

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

l(3)02094

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

l(3)02624

(BDGP Project Members, 1994-1999)

l(3)06811

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

l(3)L3999

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

l(3)psg2

(Wang et al., 2008)

l(3)rP047

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

l(3)S003405

(Szeged Stock Center, 1998-)

l(3)S012613a

(Szeged Stock Center, 1998-)

l(3)S096404

(Szeged Stock Center, 1998-)

l(3)S142909

(Szeged Stock Center, 1998-)

l(3)S145511

(Szeged Stock Center, 1998-)

LanA

(Harding et al., 1995)

loj

(Carney and Taylor, 2003, Spradling et al., 1999, BDGP Project Members, 1994-1999)

mdm

(Spradling et al., 1999)

(Rawson, 1992)

Ppat-Dpck

(Bosveld et al., 2008)

S6k

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

scny

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

scrub

(Ghabrial et al., 2011)

sfl

(BDGP Project Members, 1994-1999)

sinu

(Beitel and Krasnow, 2000, Spradling et al., 1999, BDGP Project Members, 1994-1999)

spo

(Giesen et al., 2003)

Srp54k

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

Sse

(Cipressa et al., 2016, Jager et al., 2001)

topiary

(Ghabrial et al., 2011)

(Spradling et al., 1999, Price et al., 1997, BDGP Project Members, 1994-1999)

vvl

(Inbal et al., 2003)

zpg

(Tazuke et al., 2002)

Partially deleted / disrupted

Molecular Data

Completely deleted

eIF4E4

(Marygold et al., 2007)

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

Molecular Data

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location

Related Comments

Phenotypic Data

In combination with other aberrations

NOT in combination with other aberrations

homozygous lethal

(Buszczak et al., 2009)

Df(3L)ZN47 embryos show defects in tracheal invagination.

(Myat et al., 2005)

The Df(3L)ZN47 chromosome does not act as a dominant suppressor of telomeric silencing (assayed using the effect of the chromosome on the eye colour phenotype of flies carrying "P{w^var}KR3-2", a stable "brown-red" variant of the P{3'WP-2,w^var}2Lt insertion).

(Mason et al., 2004)

Does not cause unconditional lethality in hybrid females when heterozygous with D.simulans chromosome.

(Coyne et al., 1998)

No second site non-complementing phenotype with zip^Ebr and zip^mhc-c6.1.

(Halsell and Kiehart, 1998)

Deficient embryos show an uninterpretable mutant midgut phenotype.

(Bilder and Scott, 1995)

Flies heterozygous for Df(3L)ZN47 with TM3 have incomplete L2, and L4 wing veins and anterior and posterior crossveins. This phenotype is reminiscent of the lost dominant Vn (associated with Df(3L)64C12-D1;65D2-E1) and the recessive vein mutants and is unrelated to ri.

(Rawson, 1992)

Stocks (3)

Bloomington

3096

Df(3L)ZN47, ry⁵⁰⁶/TM3, Sb¹ Ser¹

Kyoto

106837

Df(3L)ZN47, ry⁵⁰⁶/TM3, Sb¹

101599

Df(3L)ZN47, ry⁵⁰⁶ / TM3, Sb¹

Notes on Origin

Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

"Deletes or disrupts Me" was stated as tentative. Lethal over a Me jv se by chromosome. Implication is that Df(3L)ZN47 uncovers Me.

(Rawson, 1992)

Synonyms and Secondary IDs (10)

Reported As

Symbol Synonym

DF(3L)ZN47

(LaJeunesse et al., 2001)

Df ZN47

(Neukomm et al., 2017)

Df(3)ZN47

(Buszczak et al., 2009)

Df(3L)64C-65C

Df(3L)64C;65C

Df(3L)ZM47

(Carrera et al., 1998)

Df(3L)ZN47

(Li et al., 2020, Sawyer et al., 2020, Kim et al., 2018, Cipressa et al., 2016, Das et al., 2016, Galindo et al., 2014, Stratoulias et al., 2014, Fernandes and Rao, 2011, Ghabrial et al., 2011, Sinenko et al., 2010, Yamamoto et al., 2009.2.25, Bosveld et al., 2008, Casso et al., 2008, Wang et al., 2008, Crest et al., 2007, Slack et al., 2006, Wilson et al., 2006)

Df(3L)Zn47

(Tazuke et al., 2002)

Df(3L)zn-47

(Harding et al., 1995)

E(brm^K804R)64E1-65C

(Brumby et al., 2002)

Name Synonyms

Secondary FlyBase IDs

FBab0022324

References (62)

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