A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Aberration Dmel\Df(1)ct-J4

General Information
SymbolDmel\Df(1)ct-J4SpeciesD. melanogaster
NameFlyBase IDFBab0000785
Feature typechromosomal_deletion
Also Known AsDf(1)ctJ4
Computed Breakpoints include 7A2;7C1
Deleted segment7A2--7C1
Sequence coordinates
Member of large scale dataset(s)
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Description
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FB2013_03
FB2013_02
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hide Nature of the Aberration
Cytological Order
Progenitor
In(1)dl-49
(Lefevre and Johnson, 1973, Johnson and Judd, 1979)
Mutagen
X ray
(Johnson and Judd, 1979, Lefevre and Johnson, 1973)
Class of aberration (relative to progenitor)
chromosomal_deletion
(Perrimon et al., 1989, Prudhommeau and Proust, 1990, Deak et al., 1982, Pauli et al., 1995, Johnson and Judd, 1979, Lim, 1979, Lineruth et al., 1985, Ayyub et al., 1990, Harbecke and Lengyel, 1995, Craymer and Roy, 1980, Lefevre and Johnson, 1973)
Breakpoints
7A1;7B8-7C1
(Johnson and Judd, 1979)
7A2-7A3;7C1
(Ayyub et al., 1990, Pauli et al., 1995, Harbecke and Lengyel, 1995)
7A2;7C1
(Lim, 1979, Craymer and Roy, 1980, Deak et al., 1982, Lineruth et al., 1985, Perrimon et al., 1989, Prudhommeau and Proust, 1990)
7A3;7C1
(Lefevre and Johnson, 1973)
Causes alleles
Carries alleles
Transposon Insertions
Formalized genetic data Sxl << bk1 << e(olfC) << bk2 << dec-1
Genetic mapping information
Comments
hide Comments on Cytology
Limits of break 1 from polytene analysis (FBrf0033204) Limits of break 2 from polytene analysis (FBrf0025084)
 
hide Sequence Crossreferences
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
hide Gene Deletion & Duplication Data
hide Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
brk
(Campbell and Tomlinson, 1999, Jazwinska et al., 1999, Lammel and Saumweber, 2000)
ct
(Lefevre and Johnson, 1973, Johnson and Judd, 1979, Eeken et al., 1985, Proust et al., 1992, Harbecke and Lengyel, 1995)
e(olfC)
(Ayyub et al., 1990)
Hira
(Loppin et al., 2000, Loppin et al., 2005)
l(1)7Aa
(Nicklas and Cline, 1983)
l(1)7Ab
(Nicklas and Cline, 1983)
l(1)7Ad
(Nicklas and Cline, 1983)
l(1)47
(Eeken, 1982)
l(1)air7
(Nicklas and Cline, 1983)
l(1)ESHS31
(Eeken et al., 1985)
l(1)ESHS32
(Eeken et al., 1985)
l(1)ESHS33
(Eeken et al., 1985)
Molecular Data
hide Genes NOT Deleted / Disrupted
Complementation Data
bou
(Nicklas and Cline, 1983)
cm
(Nicklas and Cline, 1983)
dec-1
(Lineruth et al., 1985)
fs(1)h
(Florence and McGinnis, 1998, Eeken et al., 1985)
l(1)6Eb
(Nicklas and Cline, 1983)
l(1)6Ed
(Nicklas and Cline, 1983)
l(1)7Do
(Eeken et al., 1985)
l(1)7Fg
(Eeken et al., 1985)
l(1)8E
(Eeken, 1982)
l(1)9
(Eeken, 1982)
l(1)13
(Eeken, 1982)
l(1)38
(Eeken, 1982)
l(1)48
(Eeken, 1982)
l(1)53
(Eeken, 1982)
l(1)54
(Eeken, 1982)
l(1)56
(Eeken, 1982)
l(1)72
(Eeken, 1982)
l(1)74
(Eeken, 1982)
l(1)91-1
(Eeken, 1982)
l(1)91-2
(Eeken, 1982)
l(1)91-3
(Eeken, 1982)
l(1)91-4
(Eeken, 1982)
l(1)105
(Eeken, 1982)
l(1)A36.3
(Proust et al., 1992)
l(1)B23.2
(Proust et al., 1992)
l(1)D39.5
(Proust et al., 1992)
l(1)ESHS24
(Eeken et al., 1985)
l(1)ESHS25
(Eeken et al., 1985)
l(1)ESHS26
(Eeken et al., 1985)
l(1)ESHS27
(Eeken et al., 1985)
l(1)ESHS28
(Eeken et al., 1985)
l(1)ESHS29
(Eeken et al., 1985)
l(1)ESHS30
(Eeken et al., 1985)
l(1)ESHS32
(Eeken et al., 1985)
l(1)ESHS34
(Eeken et al., 1985)
l(1)ESHS35
(Eeken et al., 1985)
l(1)ESHS36
(Eeken et al., 1985)
l(1)ESHS37
(Eeken et al., 1985)
l(1)ESHS38
(Eeken et al., 1985)
l(1)ESHS39
(Eeken et al., 1985)
l(1)L60.6
(Proust et al., 1992)
mys
(Wieschaus et al., 1984)
ogre
(Nicklas and Cline, 1983)
rtv
(Wieschaus et al., 1984)
shf
(Craymer and Roy, 1980)
sn
(Eeken et al., 1985)
stout
(Florence and McGinnis, 1998, Nicklas and Cline, 1983)
Sxl
(Nicklas and Cline, 1983)
Molecular Data
hide Genes Duplicated
Complementation Data
Molecular Data
hide Genes NOT Duplicated
Complementation Data
Molecular Data
hide Related Comments
hide Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations
Homozygous embryos have normal gut morphology.
(Merabet et al., 2002)
Weak second site non-complementing phenotype with zipEbr and zipmhc-c6.1: malformed phenotype penetrance 10-24%.
(Halsell and Kiehart, 1998)
Midgut development of mutant embryos is wild type.
(Bilder and Scott, 1995)
Salivary glands are reduced in size in homozygous embryos. Malpighian tubule material is not elongated.
(Harbecke and Lengyel, 1995)
Heterozygosity for this deletion has no effect on the mutant ovarian phenotype of ovoD2.
(Pauli et al., 1995)
Embryos hemizygous for Df(1)ct-J4 and Df(1)ct4b1 were examined with polarised light microscopy and antibody staining: muscle pattern incomplete due to muscle absences.
(Drysdale et al., 1993)
Homozygous embryos lack Malpighian tubules and the gut wall is 3--4 fold thicker than wild type at the junction of the posterior and anterior midgut.
(Liu et al., 1991)
Lethal.
(Johnson and Judd, 1979)
Male lethal.
(Lefevre and Johnson, 1973)
Lethal male embryos show incomplete condensation of the ventral nerve cord <up>Campos-Ortega and Jimenez, 1979, Development and Neurobiology of Drosophila (Siddiqi, Babu, Hall and Hall, eds.). Plenum Press, New York and London, pp. 201-22</up>. Heterozygotes with wild-type or balancer X chromosomes show thoracic protuberances <up>100% penetrance and variable expression (Voelker and Wisely, 1982, D. I. S. 58: 150-51)</up>.
 
hide Stocks ( 3 )
Bloomington
948
Df(1)ct-J4, In(1)dl-49, f1/C(1)DX, y1 w1 f1; Dp(1;3)sn13a1/+
Kyoto
108927
Df(1)ct-J4, In(1)dl-49, f1/C(1)DX, y1 w1 f1; Dp(1;3)sn13a1/+
103349
C(1)DX, y1 w1 f1 / Df(1)ct-J4 In(1)dl-49, f1 ; Dp(1;3)sn13a1 ; Ki1
hide Notes on Origin
Discoverer
T.K. Johnson.
 
hide Balancer / Genotype Variants of the Aberration
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hide Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym
Df(1)ctJ4
(Lammel and Saumweber, 2000, Jazwinska et al., 1999, Craymer and Roy, 1980, Ayyub et al., 1990, Eeken, 1982, Lineruth et al., 1985, Lim, 1979, Johnson and Judd, 1979, Deak et al., 1982, Schalet, 1986, Eeken et al., 1985, Wieschaus et al., 1984, Liu et al., 1991, Watson et al., 1991, Prudhommeau and Proust, 1990, Homyk and Pye, 1989, Perrimon et al., 1989, Lipshitz and Kankel, 1985)
Df(1)ctj4
(Nicklas and Cline, 1983)
Df(1)ctJ4
(Hasan, 1989)
Df(1)ct-J4
(Crest et al., 2007)
Df ctJ4
(Proust et al., 1992)
J4
(Lefevre and Johnson, 1973)
Name Synonym
Secondary FlyBase IDs
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