A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Aberration Dmel\Df(1)r-D1

General Information
SymbolDmel\Df(1)r-D1SpeciesD. melanogaster
NameDeficiency (1) rudimentaryFlyBase IDFBab0000884
Feature typechromosomal_deletion
Also Known AsDf(1)rD1
Computed Breakpoints include 14C5-14C6;15B1
Deleted segment14C5--15B1
Sequence coordinates
Member of large scale dataset(s)
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Description
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FB2013_03
FB2013_02
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hide Nature of the Aberration
Cytological Order
Progenitor
Mutagen
ICR 170
 
Class of aberration (relative to progenitor)
chromosomal_deletion
(Homyk and Pye, 1989, Ganetzky, 1984, Banga et al., 1995, McKim et al., 1996, Fyrberg et al., 1994, Harbecke and Lengyel, 1995)
Breakpoints
14B6;15A2
(Harbecke and Lengyel, 1995)
14B;15B
(Fyrberg et al., 1994)
14C2-14C4;15B2-15C1
(Ganetzky, 1984, Homyk and Pye, 1989)
14C5-14C6;15A6-15B1
(Banga et al., 1995)
14D1-14D2;15D1-15D2
(McKim et al., 1996)
Causes alleles
Carries alleles
Transposon Insertions
Formalized genetic data mei-41 << bk1 << l(1)15DFb << l(1)15DFa << bk2 << l(1)ESHS51
Genetic mapping information
Comments
hide Comments on Cytology
Ref: FBrf0040979.
(McKim et al., 1996)
Simple deficiency. Breakpoints are 14B6;15A2 or 14C2-14C4;15B2
(Pauli et al., 1995)
Limits of break 1 from polytene analysis (FBrf0079877) Left limit of break 2 from polytene analysis (FBrf0076870) Right limit of break 2 from polytene analysis (FBrf0079877)
 
hide Sequence Crossreferences
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
hide Gene Deletion & Duplication Data
hide Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
Arp2
(Fyrberg et al., 1994)
if
(Schalet, 1986)
l(1)14Db
(Schalet, 1986)
l(1)14DEa
(Banga et al., 1995)
l(1)14DEb
(Banga et al., 1995)
l(1)15ACa
(Schalet, 1986)
l(1)15DFa
(Schalet, 1986)
l(1)15DFb
(Schalet, 1986)
l(1)ESHS49
(Eeken et al., 1985)
l(1)ESHS50
(Eeken et al., 1985)
para
(Banga et al., 1995, Lilly et al., 1994, Ganetzky, 1984, Eeken et al., 1985, Homyk and Pye, 1989, Schalet, 1986, Parker et al., 2011)
un
(Schalet, 1986)
Molecular Data
hide Genes NOT Deleted / Disrupted
Complementation Data
eIF-2α
(Banga et al., 1995, Schalet, 1986)
Gpi1
(Schalet, 1986, Lindsley, 1993, Banga et al., 1995)
l(1)9-38-1
(Schalet, 1986, Banga et al., 1995)
l(1)14ABa
(Eeken et al., 1985)
l(1)14BCa
(Schalet, 1986, Banga et al., 1995)
l(1)14Cb
(Lindsley, 1993, Banga et al., 1995)
l(1)14Cc
(Lindsley, 1993)
l(1)14Cd
(Lindsley, 1993)
l(1)14Ce
(Lindsley, 1993)
l(1)16ACa
(Schalet, 1986)
l(1)16ACb
(Schalet, 1986)
l(1)ESHS47
(Eeken et al., 1985)
l(1)ESHS51
(Eeken et al., 1985)
M(1)15DEF
(Eeken et al., 1985)
mei-41
(Eeken et al., 1985, Banga et al., 1995)
mh
(Loppin et al., 2001)
nonA
(Stanewsky et al., 1993, Banga et al., 1995)
para
(Ganetzky and Wu, 1982)
tc
(Schalet, 1986)
U2af50
(Schalet, 1986, Lindsley, 1993, Banga et al., 1995)
Molecular Data
hide Genes Duplicated
Complementation Data
Molecular Data
hide Genes NOT Duplicated
Complementation Data
Molecular Data
hide Related Comments
hide Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations
Intermediate second site non-complementing phenotype with zipEbr and zipmhc-c6.1: malformed phenotype penetrance 25-75%.
(Halsell and Kiehart, 1998)
Midgut development of mutant embryos is wild type.
(Bilder and Scott, 1995)
Homozygous embryos are very abnormal compared to wild-type.
(Harbecke and Lengyel, 1995)
Heterozygosity for this deletion has no effect on the mutant ovarian phenotype of ovoD2.
(Pauli et al., 1995)
Hemizygous embryos were examined with polarised light microscopy and antibody staining: no syncytial muscles develop, embryos are immobile, and visceral mesoderm development is also impaired.
(Drysdale et al., 1993)
Semilethal opposite r, r29, or r38 para- r- Two Minutes surround r ; the one on the left, M(1)14C, is new, the one on the right is RpS5 (Lefevre)
 
hide Stocks ( 3 )
Bloomington
5272
Df(1)r-D1, v1 f1/C(1)DX, y1 f1; Dp(1;4)r+m
Kyoto
108140
Df(1)r-D1/C(1)DX, y1 f1; Dp(1;4)r+m
106698
Df(1)r-D1, v1 f1/C(1)DX, y1 w1 f1; Dp(1;4)r+*/+
hide Notes on Origin
Discoverer
hide Balancer / Genotype Variants of the Aberration
hide Separable Components
hide Other Comments
"14C5--6;15A6--B1" was stated as revision.
(Banga et al., 1995)
hide Synonyms & Secondary IDs ( 8 )
Reported As
Symbol Synonym
Df(1)(D)
 
Df(1)r1D
(Wieschaus et al., 1984)
Df(1)rD1
(Lammel and Saumweber, 2000, Schalet, 1986, Eeken et al., 1985, Ganetzky, 1984, Ganetzky and Wu, 1982, Lilly and Carlson, 1990)
Df(1)rD1
(McKim et al., 1996)
Df(1)r-D1
(Parker et al., 2011)
Df(1)r-Dl
(Homyk and Pye, 1989)
rD1
(Livingstone et al., 1984)
Name Synonym
Deficiency (1) rudimentary
 
Secondary FlyBase IDs
hide References ( 28 )
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hide Recent research papers ( 1 )
Parker et al., 2011, Genetics 187(2): 523--534
Drosophila as a Model for Epilepsy: bss Is a Gain-of-Function Mutation in the Para Sodium Channel Gene That Leads to Seizures. [FBrf0213034]
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