A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Aberration Dmel\Df(1)sd72b

General Information
SymbolDmel\Df(1)sd72bSpeciesD. melanogaster
NameDeficiency (1) scallopedFlyBase IDFBab0000956
Feature typechromosomal_deletionCreated / Updated2006-08-22/2006-08-22
Formalized genetic data bas << bk1 << l(1)A17 << l(1)04 << bk2 << Cyp1
Sequence coordinates
Deleted segment13F1--14B1
Duplicated segment
Computed Breakpoints include 13F1;14B1
Breakpoints Inherited  
hide Nature of the Aberration
Cytological Order
Progenitor
Mutagen
X ray
(Campbell et al., 1991)
Class of aberration (relative to progenitor)
chromosomal_deletion
(Watson et al., 1991, Pauli et al., 1995, Mason et al., 1981, Kulkarni et al., 1988, Chen et al., 1991, Duffy et al., 1996, Rutherford, 1995, Cook et al., 1997, Harbecke and Lengyel, 1995, Landecker et al., 1994, Inamdar et al., 1993, Craymer and Roy, 1980)
Breakpoints
13F1;14B1
(Craymer and Roy, 1980, Mason et al., 1981, Kulkarni et al., 1988, Watson et al., 1991, Chen et al., 1991, Inamdar et al., 1993, Landecker et al., 1994, Pauli et al., 1995, Harbecke and Lengyel, 1995, Rutherford, 1995, Duffy et al., 1996, Cook et al., 1997)
Causes alleles
Carries alleles
Transposon Insertions
Genetic mapping information
Comments
hide Comments on Cytology
All limits from polytene analysis (FBrf0034402)
 
hide Molecularly Mapped Breakpoints
 
hide Sequence Crossreferences
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
hide Gene Deletion & Duplication Data
hide Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
sd
(Katzen, 1990, Katzen and Bishop, 1996)
shi
(Katzen, 1990, Chen et al., 1991, Rauskolb et al., 1993, Katzen and Bishop, 1996)
Myb
(Katzen, 1990, Katzen and Bishop, 1996, Katzen et al., 1998)
sun
(Katzen, 1990, Katzen and Bishop, 1996, Kidd et al., 2005)
Chc
(Katzen, 1990, Katzen and Bishop, 1996)
exd
(Tearle and Nusslein-Volhard, 1987, Peifer and Wieschaus, 1990, Katzen, 1990, Rauskolb et al., 1993, Harbecke and Lengyel, 1995, Katzen and Bishop, 1996)
l(1)A13
(Rutherford, 1995)
l(1)04
(Rutherford, 1995)
l(1)14Ah
(Katzen, 1990, Rauskolb et al., 1993, Katzen and Bishop, 1996)
l(1)14Ai
(Katzen, 1990, Rauskolb et al., 1993, Katzen and Bishop, 1996)
l(1)14Ad
(Katzen, 1990, Rauskolb et al., 1993, Katzen and Bishop, 1996)
l(1)14Ag
(Katzen, 1990, Rauskolb et al., 1993, Katzen and Bishop, 1996)
l(1)A10
(Rutherford, 1995)
l(1)24
(Rutherford, 1995)
l(1)36
(Rutherford, 1995)
slrp
(Homyk and Pye, 1989)
l(1)16
(Rutherford, 1995)
l(1)14Af
(Katzen, 1990, Rauskolb et al., 1993, Katzen and Bishop, 1996)
l(1)13Fa
(Katzen, 1990, Katzen and Bishop, 1996)
l(1)29
(Rutherford, 1995)
l(1)13Fd
(Katzen, 1990, Katzen and Bishop, 1996)
l(1)14Ac
(Katzen, 1990, Rauskolb et al., 1993, Katzen and Bishop, 1996)
l(1)A17
(Rutherford, 1995)
l(1)13Fc
(Katzen, 1990, Katzen and Bishop, 1996)
l(1)22
(Rutherford, 1995)
l(1)14Ae
(Katzen, 1990, Rauskolb et al., 1993, Katzen and Bishop, 1996)
l(1)14
(Rutherford, 1995)
Molecular Data
hide Genes NOT Deleted / Disrupted
Complementation Data
mus101
(Mason et al., 1981)
Rhp
(Edwards, 1999.3.3)
Cyp1
(Rutherford, 1995)
mei-41
(Mason et al., 1981)
nonA
(Kulkarni et al., 1988)
bss
(Ganetzky and Wu, 1982)
l(1)30
(Rutherford, 1995)
l(1)827
(Rutherford, 1995)
l(1)218
(Rutherford, 1995)
l(1)02
(Rutherford, 1995)
l(1)100
(Rutherford, 1995)
l(1)08
(Rutherford, 1995)
mus109
(Mason et al., 1981)
bas
(Ganetzky and Wu, 1982, Hall, 1992)
l(1)17
(Rutherford, 1995)
l(1)32
(Rutherford, 1995)
mh
(Loppin et al., 2001)
l(1)318
(Rutherford, 1995)
Molecular Data
hide Genes Duplicated
Complementation Data
Molecular Data
hide Genes NOT Duplicated
Complementation Data
Molecular Data
hide Related Comments
hide Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations
Does not cause unconditional lethality in hybrid females when heterozygous with D.simulans chromosome.
(Coyne et al., 1998)
Dominantly causes tergite defects in less than 50% of run3 heterozygotes.
(Duffy et al., 1996)
Extreme sd phenotype over RpII215Ubl.
 
Hemizygous embryos were examined with polarised light microscopy and antibody staining: movement sluggish, muscle pattern incomplete and shape of attachment sites subtly altered.
(Drysdale et al., 1993)
Heterozygosity for this deletion has no effect on the mutant ovarian phenotype of ovoD2.
(Pauli et al., 1995)
Midgut development of mutant embryos is wild type.
(Bilder and Scott, 1995)
No second site non-complementing phenotype with zipEbr and zipmhc-c6.1.
(Halsell and Kiehart, 1998)
Shows dominant enhancement of dominant haltere phenotype caused by Ubx195 and Ubx9.22.
(Burnette et al., 1999)
Shows no maternal enhancement of dpphr4.
(Nicholls and Gelbart, 1998)
hide Position Effect Variegation Data
  
hide Stocks ( 2 )
Bloomington
3347
Df(1)sd72b/FM7a
Kyoto
106995
Df(1)sd72b/FM7a
hide Notes on Origin
Discoverer
Lefevre, 26th Feb. 1972.
 
Separable from: a recessive lethal not closely linked to the deficiency.
(Fung et al., 2002)
hide Balancer / Genotype Variants of the Aberration
    hide Separable Components
      hide Other Comments
      Heterozygotes with wild type copy of sd have an incompletely penetrant wing margin phenotype similar to sd. Females often have twisted third thoracic legs. Ectopic bristles are often clustered along the wing veins.
      (Campbell et al., 1991)
      hide Synonyms & Secondary IDs ( 10 )
      Reported As
      Symbol Synonym
      Df(1)
       
      Df(1)sc72b
      (Brumby et al., 2004)
      Df(1)sd
       
      Df(1)sd72b
      (Crest et al., 2007)
      Df(1)sd72b26
      (Rauskolb et al., 1993, Folkers et al., 1993)
      Df(1)sd72b26
      (Fung et al., 2002, Edwards, 1999.3.3, Katzen et al., 1998, Katzen and Bishop, 1996, Kim and Wu, 1990, Kulkarni et al., 1988, Katzen, 1990, Campbell et al., 1991, Ganetzky and Wu, 1982, Wieschaus et al., 1984, Watson et al., 1991)
      Df(1)sd72b
      (Kidd et al., 2005, Clyne et al., 1999, Grant et al., 1998, Craymer and Roy, 1980, Inamdar et al., 1993, Chen et al., 1991, Peifer and Wieschaus, 1990, Campbell et al., 1991, Homyk and Pye, 1989)
      Dfsd72b26
      (Mason et al., 1981)
      sd72b
      (Sanchez et al., 1994)
      Name Synonym
      Deficiency (1) scalloped
       
      Secondary FlyBase IDs
        hide References ( 51 )
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        hide Recent research papers ( 1 )
        Crest et al., 2007, Genetics 175(2): 567--584
        Onset of the DNA replication checkpoint in the early Drosophila embryo. [FBrf0194644]
        Show all research papers ...