FlyBase Aberration Report: Dmel\Df(2R)Jp1

General Information

Symbol

Df(2R)Jp1

Species

D. melanogaster

Name

FlyBase ID

FBab0001967

Feature type

chromosomal_deletion

Computed Breakpoints include

51C3;52F8-52F9

Features within 51C3--52F9

Sequence coordinates

Member of large scale dataset(s)

Nature of Aberration

Cytological Order

Progenitor

Dp(1;2)51b

(Saxton et al., 1991)

Mutagen

Class of aberration (relative to wild type)

chromosomal_deletion

(FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Nestoras et al., 1997, Crozatier et al., 1996, Duffy et al., 1996, Harbecke and Lengyel, 1995, Kania et al., 1995, Pauli et al., 1995, Castrillon et al., 1993)

Breakpoints

51C3;52F5-52F9

(Crozatier et al., 1996, Duffy et al., 1996, Harbecke and Lengyel, 1995, Kania et al., 1995, Pauli et al., 1995, Castrillon et al., 1993)

51C3;[]

(Nestoras et al., 1997)

Causes alleles

Carries alleles

Transposon Insertions

Formalized genetic data

kn << bk1 << ES2-1 << bk2 << veg

Genetic mapping information

Comments

This deletion removes a single ribosomal protein-coding gene (though other genes are also removed).

(Marygold et al., 2007)

Comments on Cytology

Ref: Saxton et al., 1991, Cell 64: 1093--1102

(Kania et al., 1995)

Limits of break 1 from polytene analysis (FBrf0064394) Left limit of break 2 from polytene analysis (citation unavailable) Right limit of break 2 from polytene analysis (FBrf0064394)

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

Acly

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

aPKC

(Rolls et al., 2003, Sekelsky et al., 2000, Wodarz et al., 2000, Sekelsky, 1999.9.21, Spradling et al., 1999)

boc

(Sekelsky et al., 2000, Spradling et al., 1999, BDGP Project Members, 1994-1999, Castrillon et al., 1993)

chn

(Sekelsky et al., 2000, Spradling et al., 1999, Kania et al., 1995, BDGP Project Members, 1994-1999)

Diap2

(Colussi et al., 2000)

dup

(Sekelsky et al., 2000, Whittaker et al., 2000, Spradling et al., 1999, BDGP Project Members, 1994-1999)

ES2-1

(Neufeld et al., 1998)

Gpo1

(Spradling et al., 1999)

ItgaPS4

(Schock and Perrimon, 2003)

l(2)k05419a

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

pcs

(Sinka et al., 2002)

Prosβ1

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

scb

(Brumby et al., 2004, Schock and Perrimon, 2003, Sekelsky et al., 2000, Spradling et al., 1999, Stark et al., 1997, BDGP Project Members, 1994-1999)

Vha36-1

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

Xpc

(Sekelsky et al., 2000, Sekelsky, 1999.9.21)

Partially deleted / disrupted

Molecular Data

Completely deleted

mRpL41

(Marygold et al., 2007)

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

Molecular Data

Shark

(Fernandez et al., 2000)

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location (0)

If no genes are listed here, it may be because the affected region is very large. The JBrowse insert above may show an error for the same reason, and other FlyBase tools such as CytoSearch may also fail for large regions. You can contact FlyBase for more help.
In these cases, there will be no "Export to Hitlist" button to the left.

Related Comments

Phenotypic Data

In combination with other aberrations

Df(2R)knSA3 fails to complement Df(2R)Jp1.

(Van Daele, 1998.8.11)

NOT in combination with other aberrations

Homozygous embryos show defects in salivary gland invagination and migration.

(Xu et al., 2008)

Flies heterozygous for the deletion do not show a Minute bristle phenotype.

(Marygold et al., 2007)

Heterozygosity for Df(2R)Jp1 results in 1.2% X chromosome nondisjunction and 0.0% fourth chromosome nondisjunction in In(1)FM7/X ; sv^spa-pol females.

(Harris et al., 2003)

Intermediate second site non-complementing phenotype with zip^Ebr and zip^mhc-c6.1 : malformed phenotype penetrance 25-75%.

(Halsell and Kiehart, 1998)

Shows no maternal enhancement of dpp^hr4.

(Nicholls and Gelbart, 1998)

Does not uncover Dsim\jba in D.melanogaster/D.simulans hybrids. Does not uncover Dsim\pm in D.melanogaster/D.simulans hybrids.

(Yamamoto et al., 1997)

Acts as a dosage sensitive maternal modifier of run : causes tergite defects in greater than 50% of run³ heterozygotes.

(Duffy et al., 1996)

Homozygous embryos are very abnormal compared to wild-type.

(Harbecke and Lengyel, 1995)

Heterozygosity for this deletion has no effect on the mutant ovarian phenotype of ovo^D2.

(Pauli et al., 1995)

Stocks (2)

Bloomington

3518

w^a N^fa-g; Df(2R)Jp1/CyO

Kyoto

107077

w^a N^fa-g; Df(2R)Jp1/CyO

Notes on Origin

Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Synonyms and Secondary IDs (6)

Reported As

Symbol Synonym

Df(2R)80850

(Crozatier et al., 1999)

Df(2R)^JP1

(Muraoka et al., 2018)

Df(2R)JP1

(Ruiz-Canada et al., 2004, Rolls et al., 2003, Sinka et al., 2002, Gildea et al., 2000, Whittaker et al., 2000, Stark et al., 1997, Crozatier et al., 1996, Pauli et al., 1995, Castrillon et al., 1993)

Df(2R)Jp1

(Tan et al., 2020, Clough et al., 2014, Galindo et al., 2014, Fernandes and Rao, 2011, Higashi-Kovtun et al., 2010, Grillo-Hill and Wolff, 2009, Kim et al., 2009, Bejarano et al., 2008, Xu et al., 2008, Crest et al., 2007, Jani and Schock, 2007, Anderson et al., 2006)

DfJp1

(Kim et al., 2009)

Jp1

(Yamaguchi et al., 2001)

Name Synonyms

Secondary FlyBase IDs

References (68)

Report Sections

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