Aberration Dmel\Df(2R)nap9

General Information
Symbol	Dmel\Df(2R)nap9	Species	D. melanogaster
Name		FlyBase ID	FBab0002190
Feature type	chromosomal_deletion

Computed Breakpoints include	42A1-42A2;42E6-42F1
Deleted segment	42A1--42F1
Map ( GBrowse )	Untitled Document
Sequence coordinates	2R:1,685,751..1,740,465 (Df(2R)nap9:bk1) (Yamamoto et al., 2009.2.25) 2R:2,887,736..2,897,448 (Df(2R)nap9:bk2) (Yamamoto et al., 2009.2.25)
Recent Updates
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FB2012_01	References Malmanche et al., 2007, Curr. Biol. 17(17): 1489--1497
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Nature of the Aberration
Cytological Order
Progenitor
Mutagen
Class of aberration (relative to progenitor)	chromosomal_deletion (Cohen et al., 1992, Gellon et al., 1997, Kreber, 1994.3.17)
Breakpoints	42A1-42A2;42E5-42E7 (Cohen et al., 1992) 42A1-42A2;42E5-42F1 (Kreber, 1994.3.17) 42A1-42A2;42E6-42F1 (Gellon et al., 1997)
Causes alleles
Carries alleles
Transposon Insertions
Formalized genetic data	ap << bk1 << Eb1 << bk2
Genetic mapping information
Comments
Comments on Cytology
	The left Df(2R)nap9 breakpoint lies within dpr12 or Or42b or in the region between dpr12 and Or42b, and lies in the range 2R:1685751..1740465 (R5) (predicted cytology: 41F11-42A1). (Yamamoto et al., 2009.2.25) The right Df(2R)nap9 breakpoint likely lies within Tsp42Ec or Tsp42Ed or in the region between these genes, and lies in the range 2R:2887736..2897448 (R5) (predicted cytology: 42B2). (Yamamoto et al., 2009.2.25) Left limit of break 1 from polytene analysis (FBrf0075275) Right limit of break 1 from inclusion of Src42A (FBrf0102064) Left limit of break 2 from polytene analysis (FBrf0098246) Right limit of break 2 from polytene analysis (FBrf0075275)
Sequence Crossreferences
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name
Gene Deletion & Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted	BubR1 (Malmanche et al., 2007) CG3267 (BDGP Project Members, 1994-1999) E(ls)1 (Pepple et al., 2007) Eb1 (Brumby et al., 2004) EcR (Gellon et al., 1997) l(2)42Aa (Roote and Ashburner, 2005.6) l(2)42Ab (Roote and Ashburner, 2005.6) l(2)42Ac (Roote and Ashburner, 2005.6) Src42A (Lu, 1998.3.10, Zhang et al., 1999, Lu and Li, 1999) Tdc1 (Cole et al., 2005) Tdc2 (Cole et al., 2005)
Molecular Data
Genes NOT Deleted / Disrupted
Complementation Data
	ap (Cohen et al., 1992) S(CycE^JP)2.4 (Brumby et al., 2004) S(CycE^JP)2.10 (Brumby et al., 2004)
Molecular Data
Genes Duplicated
Complementation Data
Molecular Data
Genes NOT Duplicated
Complementation Data
Molecular Data
Related Comments

Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations	The Df(2R)nap9 chromosome does not act as a dominant suppressor of telomeric silencing (assayed using the effect of the chromosome on the eye colour phenotype of flies carrying "P{w^var}KR3-2", a stable "brown-red" variant of the P{3'WP-2,w^var}2Lt insertion). (Mason et al., 2004) No second site non-complementing phenotype with zip^Ebr and zip^mhc-c6.1. (Halsell and Kiehart, 1998)
Stocks ( 3 )
Bloomington	1007 Df(2R)nap9/Dp(2;2)BG, In(2LR)Gla, wg^Gla-1
Kyoto	106701 Df(2R)nap9/In(2LR)Gla, Dp(2;2)BG, wg^Gla-1 103280 Df(2R)nap9 / In(2LR)Gla, Dp(2;2)BG, wg^Gla-1
Notes on Origin
Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	Df(2R)nap9 (Pepple et al., 2007, Anderson et al., 2006, Huang et al., 2004, Malmanche et al., 2007, Yamamoto et al., 2009.2.25) Df(2R)nap^9-2 (Cohen et al., 1992, ) Df(2R)nap⁹ (Lu and Li, 1999, Zhang et al., 1999, Kreber, 1994.3.17, Kernan et al., 1991, Kuroda et al., 1991, Funakoshi et al., 2010)
Name Synonym
Secondary FlyBase IDs
	FBab0022275
References ( 27 )

Generate a list of	All references relating to this aberration ( 27 )

List References by type	Research paper ( 21 ) Personal communication to FlyBase ( 4 ) FlyBase analysis ( 1 ) Computer file ( 1 )
Recent research papers ( 1 )
	Funakoshi et al., 2010, PLoS ONE 5(5): e10545 Evidence for an essential deglycosylation-independent activity of PNGase in Drosophila melanogaster. [FBrf0210794] Show all research papers ...