FB2025_01 , released February 20, 2025
Aberration: Dmel\Df(3L)1-16
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General Information
Symbol
Df(3L)1-16
Species
D. melanogaster
Name
FlyBase ID
FBab0002280
Feature type
chromosomal_deletion
Computed Breakpoints include

80F;80F

Features within 80F--80F
Genomic Maps
Sequence coordinates
3L:23,689,640..24,074,180 (Df(3L)1-16:bk1)
(Cook, 2016.2.8)
3L:25,798,441..27,136,525 (Df(3L)1-16:bk2)
(Cook, 2019.5.6)
Member of large scale dataset(s)
Nature of Aberration
Cytological Order
Progenitor
C(3R)RM*
C(3L)RM*
Mutagen
detachment
ethyl methanesulfonate
(Marchant and Holm, 1988)
Class of aberration (relative to wild type)
chromosomal_deletion
(FlyBase, 2007)
Class of aberration (relative to progenitor)
chromosomal_deletion
(Schulze et al., 2001, Coyne, 1996, Pauli et al., 1995, Marchant and Holm, 1988)
Breakpoints

[];[]

(Schulze et al., 2001, Marchant and Holm, 1988)

80F;80F

(Coyne, 1996)
Causes alleles
Carries alleles
Transposon Insertions
Formalized genetic data

bk1 << l(3)80Fa << l(3)80Fg << bk2 << vtd

Genetic mapping information
Comments

The 3L:25798441..27136525 release 6 coordinates of the right breakpoint are estimates. The left extent corresponds to the left end of CG40178, which Marchant & Holm (FBrf0048227) say is deleted. The right extent corresponds to the right end of vtd, which Marchant & Holm (FBrf0048227) say is not deleted.

(Cook, 2019.5.6)

The 3L:23689640..24074180 release 6 coordinates of the left breakpoint are estimates. The left extent corresponds to the right end of AGO3, which is not deleted based on complementation tests at the Bloomington Stock Center. The right extent corresponds to the left end of Snap25, which published results say is deleted.

(Cook, 2016.2.8)

The 3L:24299205..27136525 release 6 coordinates of the right breakpoint are estimates. The left extent corresponds to the right end of Snap25, which published result say is deleted. The right extent corresponds to the left end of vtd, which published results say is not deleted.

(Cook, 2016.2.8)
Comments on Cytology

h48 is clearly missing in this deficiency. Material is present distal to h52 that may derive from regions h47 and/or h49-h51.

(Koryakov et al., 2002)

Left limit of break 1 from polytene analysis (FBrf0086978) Right limit of break 1 from inclusion of l(3)80Fa (FBrf0048227) Left limit of break 2 from inclusion of l(3)80Ff (FBrf0048227) Right limit of break 2 from polytene analysis (FBrf0086978)

Sequence Crossreferences
DDBJ / EMBL / GenBank
DNA sequence
Protein sequence
Gene Deletion and Duplication Data
Genes Deleted / Disrupted
Genes NOT Deleted / Disrupted
Genes Duplicated
Complementation Data
Completely duplicated
Partially duplicated
Molecular Data
Completely duplicated
Partially duplicated
Genes NOT Duplicated
Complementation Data
 
Molecular Data
 
Affected Genes Inferred by Location (43)
Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations

Does not cause unconditional lethality in hybrid females when heterozygous with D.simulans chromosome.

(Coyne et al., 1998)

Dominantly causes tergite defects in less than 50% of run3 heterozygotes.

(Duffy et al., 1996)

Heterozygosity for this deletion has no effect on the mutant ovarian phenotype of ovoD2.

(Pauli et al., 1995)
Stocks (1)
Notes on Origin
Discoverer
 
Balancer / Genotype Variants of the Aberration
 
Separable Components
 
Other Comments
 

Used in D.melanogaster/D.simulans hybrids to map at least four non-overlapping regions on the D.simulans 3R that have effects on the species difference of cuticular hydrocarbon profile.

(Coyne, 1996)
Synonyms and Secondary IDs (4)
References (27)