Aberration Dmel\Df(3L)st-E5

General Information
Symbol	Dmel\Df(3L)st-E5	Species	D. melanogaster
Name	Deficiency (3L) scarlet	FlyBase ID	FBab0002308
Feature type	chromosomal_deletion

Computed Breakpoints include	[<73A3];73A9
Deleted segment	73A3--73A9
Sequence coordinates
Member of large scale dataset(s)
Recent Updates
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FB2013_03
FB2013_02
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Nature of the Aberration
Cytological Order
Progenitor
Mutagen	X ray (Butler et al., 1986)
Class of aberration (relative to progenitor)	chromosomal_deletion (Butler et al., 1986)
Breakpoints	[];73A9--10 (Butler et al., 1986)
Causes alleles
Carries alleles
Transposon Insertions
Formalized genetic data	bk1 << st << bk2 << tra
Genetic mapping information
Comments	+80 kb (prox.) The zero coordinate used in locating the molecular lesions is the 73A3-4 breakpoint of In(3LR)st^a27, '+' values to the right, '-' values to the left (McKeown, Belote, and Baker, 1987, Cell 48: 489-99). The distal and proximal molecular breaks of the deficiencies made by Butler et al, 1986, were estimated using this zero coordinate. (BamHI site, midway between Df(3L)st-E5 and Df(3L)st-E52, was the original zero coordinate of Butler et al.) +2 to 0. DNA coordinates (kb) of proximal breakpoints in the walk in region 73A-B of McKeown and Belote, which originates at the left breakpoint of In(3LR)st^a27 ('+' values to right, '-' values to left). Df(3L)st-E coordinates from Butler et al., 1986; coordinate 0 halfway between right breakpoints of Df(3L)st-E5 and Df(3L)st-E52; positive values to the left
Comments on Cytology
	Right limit of break 1 from inclusion of st (FBrf0044249) Left limit of break 2 from polytene analysis (FBrf0044249) Right limit of break 2 from non-inclusion of tra (FBrf0042175)
Sequence Crossreferences
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name
Gene Deletion & Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted	st (Butler et al., 1986)
Molecular Data
Genes NOT Deleted / Disrupted
Complementation Data
	Su(P) (Bichon et al., 2001) tra (Belote et al., 1985, Butler et al., 1986)
Molecular Data
Genes Duplicated
Complementation Data
Molecular Data
Genes NOT Duplicated
Complementation Data
Molecular Data
Related Comments

Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations	homozygous lethal
Stocks ( 0 )

Notes on Origin
Discoverer	Butler.

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments
	Breakpoint molecularly mapped. (Butler et al., 1986)
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	Df(3L)E5 Df(3L)st-E5 DfE5 (Butler et al., 1986)
Name Synonym	Deficiency (3L) scarlet
Secondary FlyBase IDs

References ( 5 )
Research paper	Bichon et al., 2001, Mol. Genet. Genomics 265(2): 354--361 Genetic and molecular features of Su(P), a gene that interacts with ref(2)P in male fertility of Drosophila melanogaster. [FBrf0137024] Butler et al., 1986, EMBO J. 5: 3607--3613 The sex-determining gene tra of Drosophila: molecular cloning and transformation studies. [FBrf0044249] Belote et al., 1985, Cold Spring Harbor Symp. Quant. Biol. 50: 605--614 Control of sexual differentiation in Drosophila melanogaster. [FBrf0042175]
FlyBase analysis	FlyBase, 2007, En masse symbol-based assigment of Aberration Class with respect to wild type. En masse symbol-based assigment of Aberration Class with respect to wild type. [FBrf0191808]
Book	Lindsley and Zimm, 1992, The Genome of Drosophila melanogaster. The Genome of Drosophila melanogaster. [FBrf0066905]