FB2025_01 , released February 20, 2025
Aberration: Dmel\Df(3L)st-E5
Open Close
General Information
Symbol
Df(3L)st-E5
Species
D. melanogaster
Name
Deficiency (3L) scarlet
FlyBase ID
FBab0002308
Feature type
chromosomal_deletion
Computed Breakpoints include

[<73A3];73A9

Features within 73A3--73A9
Sequence coordinates
Member of large scale dataset(s)
Nature of Aberration
Cytological Order
Progenitor
Mutagen
X ray
(Butler et al., 1986)
Class of aberration (relative to wild type)
chromosomal_deletion
(FlyBase, 2007)
Class of aberration (relative to progenitor)
chromosomal_deletion
(Butler et al., 1986)
Breakpoints

[];73A9--10

(Butler et al., 1986)
Causes alleles
Carries alleles
Transposon Insertions
Formalized genetic data

bk1 << st << bk2 << tra

Genetic mapping information
Comments

+80 kb (prox.) The zero coordinate used in locating the molecular lesions is the 73A3-4 breakpoint of In(3LR)sta27, '+' values to the right, '-' values to the left (McKeown, Belote, and Baker, 1987, Cell 48: 489-99). The distal and proximal molecular breaks of the deficiencies made by Butler et al, 1986, were estimated using this zero coordinate. (BamHI site, midway between Df(3L)st-E5 and Df(3L)st-E52, was the original zero coordinate of Butler et al.) +2 to 0. DNA coordinates (kb) of proximal breakpoints in the walk in region 73A-B of McKeown and Belote, which originates at the left breakpoint of In(3LR)sta27 ('+' values to right, '-' values to left). Df(3L)st-E coordinates from Butler et al., 1986; coordinate 0 halfway between right breakpoints of Df(3L)st-E5 and Df(3L)st-E52; positive values to the left

Comments on Cytology

Right limit of break 1 from inclusion of st (FBrf0044249) Left limit of break 2 from polytene analysis (FBrf0044249) Right limit of break 2 from non-inclusion of tra (FBrf0042175)

Sequence Crossreferences
DDBJ / EMBL / GenBank
DNA sequence
Protein sequence
Gene Deletion and Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
st
(Butler et al., 1986)
Partially deleted / disrupted
Molecular Data
Completely deleted
Partially deleted
Genes NOT Deleted / Disrupted
Complementation Data
 
mPges2
(Bichon et al., 2001)
tra
(Butler et al., 1986, Belote et al., 1985)
Molecular Data
 
Genes Duplicated
Complementation Data
Completely duplicated
Partially duplicated
Molecular Data
Completely duplicated
Partially duplicated
Genes NOT Duplicated
Complementation Data
 
Molecular Data
 
Affected Genes Inferred by Location (0)
    If no genes are listed here, it may be because the affected region is very large. The JBrowse insert above may show an error for the same reason, and other FlyBase tools such as CytoSearch may also fail for large regions. You can contact FlyBase for more help.
    In these cases, there will be no "Export to Hitlist" button to the left.
    Phenotypic Data
    In combination with other aberrations
    NOT in combination with other aberrations

    homozygous lethal

    Stocks (0)
    Notes on Origin
    Discoverer

    Butler.

     
    Balancer / Genotype Variants of the Aberration
     
    Separable Components
     
    Other Comments
     

    Breakpoint molecularly mapped.

    (Butler et al., 1986)
    Synonyms and Secondary IDs (4)
    Reported As
    Symbol Synonym
    Df(3L)E5
    Df(3L)st-E5
    DfE5
    (Butler et al., 1986)
    Name Synonyms
    Deficiency (3L) scarlet
    Secondary FlyBase IDs
      References (5)