A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Aberration Dmel\Df(3L)ri-79c

General Information
SymbolDmel\Df(3L)ri-79cSpeciesD. melanogaster
NameDeficiency (3L) radius incompletusFlyBase IDFBab0002395
Feature typechromosomal_deletionCreated / Updated2006-08-22/2006-08-22
Formalized genetic data eRF1 << bk1 << Psn << l(3)77CDf << bk2 << fng
Sequence coordinates
Deleted segment77B7--77F5
Duplicated segment
Computed Breakpoints include 77C1;[] 77B7-77B9;77F1-77F5
Breakpoints Inherited  
hide Nature of the Aberration
Cytological Order
Progenitor
Mutagen
Class of aberration (relative to progenitor)
chromosomal_deletion
(Birchler et al., 1994, Pauli et al., 1995, Dorer et al., 1995, Duffy et al., 1996, Harbecke and Lengyel, 1995, Deak et al., 1997, Ito and Rubin, 1999)
Breakpoints
77C1;[]
(Adler et al., 1994)
77B-77C;77F
(Birchler et al., 1994)
77B-77C;77F-78A
(Pauli et al., 1995, Harbecke and Lengyel, 1995, Dorer et al., 1995, Duffy et al., 1996)
77B1-77C7;77F1-78A7
(Deak et al., 1997)
77A2;77E1
(Ito and Rubin, 1999)
Causes alleles
Carries alleles
Transposon Insertions
Genetic mapping information
Comments
hide Comments on Cytology
Left limit of break 1 from non-inclusion of eRF1 (FBrf0067338) Right limit of break 1 from inclusion of Psn (FBrf0093374) Left limit of break 2 from polytene analysis (FBrf0099762) Right limit of break 2 from polytene analysis (FBrf0074960)
 
Second proximal breakpoint not reported.
(Adler et al., 1994)
hide Molecularly Mapped Breakpoints
 
hide Sequence Crossreferences
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
hide Gene Deletion & Duplication Data
hide Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
Psn
(Boulianne et al., 1997, Guo et al., 1999, Lukinova et al., 1999)
mRpL15
(Lukinova et al., 1999)
trbl
(Seher, 2000.3.3, Grosshans and Wieschaus, 2000, Mata et al., 2000)
kni
(Jurgens et al., 1984, Smith et al., 1993, Adler et al., 1994, Harbecke and Lengyel, 1995, Grosshans and Wieschaus, 2000)
l(3)77CDf
(BDGP Project Members, 1994-1999, Spradling et al., 1999, Lukinova et al., 1999)
l(3)S102702a
(Szeged Stock Center, 1998-)
l(3)77CDm
(Lukinova et al., 1999)
l(3)S023941b
(Deak et al., 1997)
l(3)77CDj
(Lukinova et al., 1999)
l(3)S045002b
(Deak et al., 1997)
l(3)S104509a
(Deak et al., 1997)
l(3)S026020a
(Deak et al., 1997)
flc
(Lukinova et al., 1999)
l(3)S011001a
(Deak et al., 1997)
l(3)S048015a
(Deak et al., 1997)
l(3)77CDl
(Lukinova et al., 1999)
l(3)S101003b
(Deak et al., 1997)
l(3)S024639a
(Deak et al., 1997, Szeged Stock Center, 1998-)
l(3)77CDg
(Lukinova et al., 1999)
l(3)S112202b
(Deak et al., 1997)
l(3)S115510a
(Deak et al., 1997)
l(3)77CDe
(Lukinova et al., 1999)
l(3)77CDa
(Lukinova et al., 1999)
l(3)S011513a
(Deak et al., 1997)
l(3)S049314a
(Deak et al., 1997)
l(3)77CDi
(Lukinova et al., 1999)
l(3)77CDh
(Lukinova et al., 1999)
l(3)S003405b
(Deak et al., 1997)
l(3)77CDd
(Lukinova et al., 1999)
l(3)77CDk
(Lukinova et al., 1999)
l(3)S002401b
(Deak et al., 1997)
Molecular Data
hide Genes NOT Deleted / Disrupted
Complementation Data
gig
(Ito and Rubin, 1999)
Su(Tpl)
(Dorer et al., 1995)
eRF1
(BDGP Project Members, 1994-1999, Spradling et al., 1999, Lukinova et al., 1999, Collins, 2005)
in
(Adler et al., 1994, Lukinova et al., 1999)
fng
(BDGP Project Members, 1994-1999, Spradling et al., 1999)
skd
(BDGP Project Members, 1994-1999, Spradling et al., 1999)
mia
(Lin, 1995.4.19, Lin et al., 1996)
polo
(Szeged Stock Center, 1998-, Lukinova et al., 1999)
l(3)j7C3
(BDGP Project Members, 1994-1999)
l(3)s2253
(Lukinova et al., 1999)
l(3)S126014
(Szeged Stock Center, 1998-)
l(3)77ABd
(Lukinova et al., 1999)
l(3)77ABg
(Lukinova et al., 1999)
gim
(Myat et al., 2005)
l(3)77ABh
(Lukinova et al., 1999)
l(3)77ABf
(Lukinova et al., 1999)
fang
(Myat et al., 2005)
Wow
(Birchler et al., 1994)
cp
(Lukinova et al., 1999)
gloin
(Myat et al., 2005)
l(3)77ABj
(Lukinova et al., 1999)
l(3)77ABi
(Lukinova et al., 1999)
Snap
(Lukinova et al., 1999)
DNApol-α60
(Lukinova et al., 1999, Chen et al., 2000)
Molecular Data
hide Genes Duplicated
Complementation Data
Molecular Data
hide Genes NOT Duplicated
Complementation Data
Molecular Data
hide Related Comments
hide Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations
Df(3L)ri-79c embryos show defects in tracheal cell migration.
(Myat et al., 2005)
Deficient embryos show an uninterpretable mutant midgut phenotype.
(Bilder and Scott, 1995)
Does not cause unconditional lethality in hybrid females when heterozygous with D.simulans chromosome.
(Coyne et al., 1998)
Dominantly causes tergite defects in less than 50% of run3 heterozygotes.
(Duffy et al., 1996)
Heterozygosity for Df(3L)ri-79c results in 0.9% X chromosome nondisjunction and 1.1% fourth chromosome nondisjunction in In(1)FM7/X ; svspa-pol females.
(Harris et al., 2003)
Heterozygosity for this deletion has no effect on the mutant ovarian phenotype of ovoD2.
(Pauli et al., 1995)
Heterozygous embryos sometimes have gaps (consisting of patches of naked cuticle) in the denticle belts.
(Desbordes et al., 2005)
Homozygous mutants embryos show a failure to form a ventral furrow. The mesoderm primordium is internalised late.
(Seher and Leptin, 2000)
No second site non-complementing phenotype with zipEbr and zipmhc-c6.1.
(Halsell and Kiehart, 1998)
Severe morphological defect.
(Smith et al., 1993)
Shows dominant enhancement of dominant haltere phenotype caused by Ubx195 and Ubx9.22.
(Burnette et al., 1999)
Shows no maternal enhancement of dpphr4.
(Nicholls and Gelbart, 1998)
The Df(3L)ri-79c chromosome acts as a dominant weak suppressor of telomeric silencing (assayed using the effect of the chromosome on the eye colour phenotype of flies carrying "P{wvar}KR3-2", a stable "brown-red" variant of the P{3\'WP-2,wvar}2Lt insertion).
(Mason et al., 2004)
The number of midgut constrictions is variable in homozygous embryos.
(Harbecke and Lengyel, 1995)
hide Position Effect Variegation Data
  
hide Stocks ( 2 )
Bloomington
3127
Df(3L)ri-79c/TM3, Sb1
Kyoto
106866
Df(3L)ri-79c/TM3, Sb1
hide Notes on Origin
Discoverer
Jurgens.
 
hide Balancer / Genotype Variants of the Aberration
    hide Separable Components
      hide Other Comments
      hide Synonyms & Secondary IDs ( 8 )
      Reported As
      Symbol Synonym
      Df(3L)ri79
      (Harbecke and Lengyel, 1995)
      Df(3l)ri-79c
      (Mackay et al., 2005)
      Df(3L)ri-79C
      (Myat et al., 2005, Smulders-Srinivasan and Lin, 2003, Presgraves, 2003, Lee et al., 2001, Coyne et al., 1998, Babcock et al., 2004)
      Df(3L)ri79C
      (Harris et al., 2003, Firth et al., 2000, Ito and Rubin, 1999, Duffy et al., 1996, Bilder and Scott, 1995, Smith et al., 1993, Crest et al., 2007)
      Df(3L)ri79c
      (Rorth et al., 2000, Seher and Leptin, 2000, Grosshans and Wieschaus, 2000, Mata et al., 2000, Ye and Fortini, 1998, Carrera et al., 1998, Dorer et al., 1995, Birchler et al., 1994, Adler et al., 1994)
      Df(3L)ri-79c
      (Raja and Renkawitz-Pohl, 2005)
      ri79c
      (Provost et al., 2006)
      Name Synonym
      Deficiency (3L) radius incompletus
       
      Secondary FlyBase IDs
        hide References ( 54 )
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        hide Recent research papers ( 2 )
        Crest et al., 2007, Genetics 175(2): 567--584
        Onset of the DNA replication checkpoint in the early Drosophila embryo. [FBrf0194644]
        Provost et al., 2006, Genetics 172(1): 207--219
        Loss-of-function mutations in a glutathione S-transferase suppress the prune-Killer of prune lethal interaction. [FBrf0190760]
        Show all research papers ...