FB2025_04 , released October 2, 2025
Aberration: Dmel\Df(3L)st-f13
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General Information
Symbol
Df(3L)st-f13
Species
D. melanogaster
Name
Deficiency (3L) scarlet
FlyBase ID
FBab0002412
Feature type
chromosomal_deletion
Also Known As
Df(3L)stf-13, Df(3R)st-f13, Df(3L)stf13
Computed Breakpoints include

72C1;73A4

Features within 72C1--73A4
Sequence coordinates
Member of large scale dataset(s)
Nature of Aberration
Cytological Order
Progenitor
Mutagen
X ray
(Wemmer and Klämbt, 1995)
Class of aberration (relative to wild type)
chromosomal_deletion
(FlyBase, 2007)
Class of aberration (relative to progenitor)
chromosomal_deletion
(Deak et al., 1997, Duffy et al., 1996, Harbecke and Lengyel, 1995, Pauli et al., 1995, Wemmer and Klämbt, 1995, Birchler et al., 1994, Brizuela et al., 1994, Bedian et al., 1991, Tamkun et al., 1991, Belote et al., 1990, Tearle et al., 1989)
Breakpoints

72C1-72D1;73A3-73A4

(Bedian et al., 1991, Tamkun et al., 1991, Tearle et al., 1989)

72C1-72C2;73A3-73A4

(Deak et al., 1997, Brizuela et al., 1994, Belote et al., 1990)

72C1;73A3-73A4

(Birchler et al., 1994)

71B1-71B2;73A3-73A4

(Duffy et al., 1996, Harbecke and Lengyel, 1995, Pauli et al., 1995)

72C-72D;73A4

(Wemmer and Klämbt, 1995)
Causes alleles
Carries alleles
Transposon Insertions
Formalized genetic data

Arf72A << bk1 << l(3)72CDd << SS3-5 << bk2 << l(3)73Ah

Genetic mapping information
Comments

Breakpoint(s) molecularly mapped

(Tamkun et al., 1992)

+20 to +25. DNA coordinates (kb) of proximal breakpoints in the walk in region 73A-B of McKeown and Belote, which originates at the left breakpoint of In(3LR)sta27 ('+' values to right, '-' values to left). Df(3L)st-E coordinates from Butler et al., 1986; coordinate 0 halfway between right breakpoints of Df(3L)st-E5 and Df(3L)st-E52; positive values to the left

Comments on Cytology

Pka-C3 gene lies within a 60kb region defined by the distal breakpoints of Df(3L)brm11 and Df(3L)st-f13.

(Melendez and Kalderon, 1995)

Proximal breakpoint maps to coordinate +25 (coordinate 0 is the inversion breakpoint in st) of the argos region.

(Wemmer and Klämbt, 1995)

Left limit of break 1 from polytene analysis (FBrf0049915) Right limit of break 1 from polytene analysis (FBrf0074960) Left limit of break 2 from polytene analysis (FBrf0082770) Right limit of break 2 from polytene analysis (FBrf0049915)

Sequence Crossreferences
DDBJ / EMBL / GenBank
DNA sequence
Protein sequence
Gene Deletion and Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
aos
(Gaengel and Mlodzik, 2003, Wemmer and Klämbt, 1995, Wemmer and Klambt, 1995, Okano et al., 1992)
Arl1
(Tamkun et al., 1991)
bul
(Wemmer and Klämbt, 1995)
CrebA
(Spradling et al., 1999, BDGP Project Members, 1994-1999)
Diap1
(Cooper and Kennison, 2011, Colussi et al., 2000, Spradling et al., 1999, Szeged Stock Center, 1998-, Deak et al., 1997, Melendez et al., 1995, BDGP Project Members, 1994-1999)
dsx-c73A
(Andrew and Baker, 2008)
fax
(Bedian, 1998.10.2)
Hsc20
(Cooper and Kennison, 2011)
l(3)72-73a
(Cooper and Kennison, 2011, Kennison, 2008.10.20)
l(3)72CDb
(Melendez et al., 1995)
l(3)72CDc
(Cooper and Kennison, 2011, Melendez et al., 1995)
l(3)72De
(Cooper and Kennison, 2011)
l(3)72Df
(Cooper and Kennison, 2011)
l(3)72Dg
(Cooper and Kennison, 2011)
l(3)72Di
(Cooper and Kennison, 2011)
l(3)72Dn
(Cooper and Kennison, 2011, Spradling et al., 1999, BDGP Project Members, 1994-1999)
l(3)72Dp
(Cooper and Kennison, 2011)
l(3)72Dq
(Thomas and MacIver, 1999.8.19)
l(3)72Dr
(Cooper and Kennison, 2011)
l(3)72Fa
(Bedian, 1998.10.2)
l(3)72Fc
(Bedian, 1998.10.2)
l(3)73Aa
(Wemmer and Klämbt, 1995, McKeown et al., 1987)
l(3)73Ab
(Wemmer and Klämbt, 1995, McKeown et al., 1987)
l(3)73Ak
(Bedian, 1998.10.2)
l(3)73Al
(Bedian, 1998.10.2)
l(3)73Am
(Bedian, 1998.10.2)
l(3)LVC73
(Slack et al., 2006)
l(3)psg3
(Wang et al., 2008)
l(3)s1754
(Spradling et al., 1999, BDGP Project Members, 1994-1999)
l(3)S001925
(Szeged Stock Center, 1998-)
l(3)S003003a
(Deak et al., 1997)
l(3)S023549
(Szeged Stock Center, 1998-, Deak et al., 1997)
l(3)S042420
(Szeged Stock Center, 1998-, Deak et al., 1997)
l(3)S064411a
(Deak et al., 1997)
l(3)S114709
(Szeged Stock Center, 1998-)
l(3)S123208
(Szeged Stock Center, 1998-, Deak et al., 1997)
l(3)S134306a
(Deak et al., 1997)
l(3)S134505
(Deak et al., 1997)
l(3)SzB72Ca
(Deak et al., 1997)
Mbs
(Cooper and Kennison, 2011, Spradling et al., 1999, Szeged Stock Center, 1998-, Deak et al., 1997, BDGP Project Members, 1994-1999)
MED10
(Cooper and Kennison, 2011)
mib1
(Cooper and Kennison, 2011, Melendez et al., 1995)
mRpS34
(Spradling et al., 1999, BDGP Project Members, 1994-1999)
Notum
(Cooper and Kennison, 2011, Gerlitz and Basler, 2002, Melendez et al., 1995)
RhoGAP71E
(Spradling et al., 1999, BDGP Project Members, 1994-1999)
SS3-5
(Neufeld et al., 1998)
SsRβ
(Spradling et al., 1999, BDGP Project Members, 1994-1999)
st
(Bedian, 1998.10.2, Wemmer and Klämbt, 1995, McKeown et al., 1987)
Taf4
(Cooper and Kennison, 2011)
Tasp1
(Cooper and Kennison, 2011)
Tcs3
(Bedian, 1998.10.2)
Trs20
(Cooper and Kennison, 2011)
Zn72D
(Cooper and Kennison, 2011, Brumby et al., 2004)
Partially deleted / disrupted
Molecular Data
Completely deleted
Partially deleted
Genes NOT Deleted / Disrupted
Genes Duplicated
Complementation Data
Completely duplicated
Partially duplicated
Molecular Data
Completely duplicated
Partially duplicated
Genes NOT Duplicated
Complementation Data
 
Molecular Data
 
Affected Genes Inferred by Location (0)
    If no genes are listed here, it may be because the affected region is very large. The JBrowse insert above may show an error for the same reason, and other FlyBase tools such as CytoSearch may also fail for large regions. You can contact FlyBase for more help.
    In these cases, there will be no "Export to Hitlist" button to the left.
    Phenotypic Data
    In combination with other aberrations
    NOT in combination with other aberrations

    No defects in climbing behavior are observed in Df(3L)st-f13/+ flies.

    (Storkebaum et al., 2009)

    The Df(3L)st-f13 chromosome does not act as a dominant suppressor of telomeric silencing (assayed using the effect of the chromosome on the eye colour phenotype of flies carrying "P{wvar}KR3-2", a stable "brown-red" variant of the P{3'WP-2,wvar}2Lt insertion).

    (Mason et al., 2004)

    Heterozygosity for Df(3L)st-f13 results in 1.9% X chromosome nondisjunction and 2.7% fourth chromosome nondisjunction in In(1)FM7/X ; svspa-pol females.

    (Harris et al., 2003)

    Shows dominant enhancement of dominant haltere phenotype caused by Ubx195 and Ubx9.22.

    (Burnette et al., 1999)

    Causes inviability or low viability in hybrid females when heterozygous with D.simulans chromosome.

    (Coyne et al., 1998)

    No second site non-complementing phenotype with zipEbr and zipmhc-c6.1.

    (Halsell and Kiehart, 1998)

    Dominantly causes tergite defects in less than 50% of run3 heterozygotes.

    (Duffy et al., 1996)

    Midgut development of mutant embryos is wild type.

    (Bilder and Scott, 1995)

    Homozygous embryos do not complete germband retraction and dorsal closure and head involution are abnormal.

    (Harbecke and Lengyel, 1995)

    Heterozygosity for this deletion has no effect on the mutant ovarian phenotype of ovoD2.

    (Pauli et al., 1995)
    Stocks (2)
    Notes on Origin
    Discoverer

    Belote and McKeown.

    (Belote et al., 1990)

    Belote.

     
    Balancer / Genotype Variants of the Aberration
     
    Separable Components
     
    Other Comments
     
    Synonyms and Secondary IDs (11)
    References (67)