Aberration Dmel\Df(3L)st4

General Information
Symbol	Dmel\Df(3L)st4	Species	D. melanogaster
Name	Deficiency (3L) scarlet	FlyBase ID	FBab0002429
Feature type	chromosomal_deletion
Also Known As	Df(3L)st⁴

Computed Breakpoints include	72D10;73C1
Deleted segment	72D10--73C1
Map ( GBrowse )	Untitled Document Error No matching regions found.
Sequence coordinates	3L:16,173,092..16,176,694 (Df(3L)st4:bk1) (Cooper and Kennison, 2011)
Member of large scale dataset(s)
Recent Updates
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FB2013_03
FB2013_02
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Nature of the Aberration
Cytological Order
Progenitor
Mutagen	gamma ray (Ashburner et al., 1981)
Class of aberration (relative to progenitor)	chromosomal_deletion (Pauli et al., 1995, Ashburner et al., 1981, Coyne, 1996, Tearle et al., 1989, Cunniff et al., 1997, Velissariou and Ashburner, 1981)
Breakpoints	72D7-72D11;73B7-73C11 (Tearle et al., 1989) 72D7-72D11;73B10-73C1 (Cunniff et al., 1997) 72D10;73C1 (Coyne, 1996) 72E5-72F1;73B5-73B7 (Velissariou and Ashburner, 1981, Ashburner et al., 1981, Pauli et al., 1995)
Causes alleles
Carries alleles
Transposon Insertions
Formalized genetic data	Taf4 << bk1 << l(3)73Bd << bk2 << plk
Genetic mapping information
Comments
Comments on Cytology
	Ref: FBrf0036112. (Tearle et al., 1989) All limits from polytene analysis (FBrf0086978)
Sequence Crossreferences
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name
Gene Deletion & Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted	Abl (Bedian, 1998.10.2) aos (Spradling et al., 1999, Okano et al., 1992, BDGP Project Members, 1994-1999) dsx-c73A (Spradling et al., 1999, BDGP Project Members, 1994-1999, Andrew and Baker, 2008) fax (Bedian, 1998.10.2) l(3)72Dn (Kennison, 1995.6.21, Cooper and Kennison, 2011) l(3)72Do (Cooper and Kennison, 2011) l(3)72Dp (Cooper and Kennison, 2011) l(3)72Dr (Cooper and Kennison, 2011) l(3)72Fa (Bedian, 1998.10.2) l(3)72Fb (Bedian, 1998.10.2) l(3)72Fc (Bedian, 1998.10.2) l(3)73Ah (Spradling et al., 1999, BDGP Project Members, 1994-1999) l(3)73Ak (Bedian, 1998.10.2) l(3)73Al (Bedian, 1998.10.2) l(3)73Am (Bedian, 1998.10.2) l(3)73An (Bedian, 1998.10.2) l(3)73Bd (Belote et al., 1990) l(3)73Bf (Bedian, 1998.10.2) l(3)73Bg (Bedian, 1998.10.2) l(3)73Bh (Bedian, 1998.10.2) l(3)s3123 (Spradling et al., 1999, BDGP Project Members, 1994-1999) MED10 (Cooper and Kennison, 2011) ms(3)72D (Spradling et al., 1999, BDGP Project Members, 1994-1999) Prosβ6 (Velissariou and Ashburner, 1981, Ashburner et al., 1981) Smn (Bedian, 1998.10.2) st (Bedian, 1998.10.2, Velissariou and Ashburner, 1981, Ashburner et al., 1981) Su(P) (Bichon et al., 2001) tra (Bedian, 1998.10.2, Velissariou and Ashburner, 1981, Ashburner et al., 1981)
Molecular Data
Genes NOT Deleted / Disrupted
Complementation Data
	db (Belote et al., 1990) fz (Velissariou and Ashburner, 1981) Int6 (Cunniff et al., 1997) l(3)73Ca (Belote et al., 1990) l(3)73Cd (Belote et al., 1990) Mbs (Spradling et al., 1999, BDGP Project Members, 1994-1999) plk (Belote et al., 1990) Sgs6 (Velissariou and Ashburner, 1981) sina (Carthew and Rubin, 1990) SsRβ (Spradling et al., 1999, BDGP Project Members, 1994-1999) Taf4 (Sauer et al., 1996) th (Spradling et al., 1999, Velissariou and Ashburner, 1981, BDGP Project Members, 1994-1999)
Molecular Data
Genes Duplicated
Complementation Data
Molecular Data
Genes NOT Duplicated
Complementation Data
Molecular Data
Related Comments

Phenotypic Data
In combination with other aberrations	Df(3L)Exel6128/Df(3L)st4 flies are viable, despite the fact these deficiencies overlap. (Cooper and Kennison, 2011)
NOT in combination with other aberrations	Does not cause unconditional lethality in hybrid females when heterozygous with D.simulans chromosome. (Coyne et al., 1998) Weak second site non-complementing phenotype with zip^Ebr and zip^mhc-c6.1: malformed phenotype penetrance 10-24%. (Halsell and Kiehart, 1998) Heterozygosity for this deletion has no effect on the mutant ovarian phenotype of ovo^D2. (Pauli et al., 1995)
Stocks ( 3 )
Bloomington	3642 Df(3L)st4, gl² e⁴/TM6
Kyoto	107151 Df(3L)st4, gl² e⁴ / TM6 103301 Df(3L)st4, st⁴ gl² e⁴ / TM6, Hn^P ss^aP88 Ubx^bx-34e Ubx^P15 e¹
Notes on Origin
Discoverer	Faithfull. V. Velissariou. (Ashburner et al., 1981)

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments
	Used in D.melanogaster/D.simulans hybrids to map at least four non-overlapping regions on the D.simulans 3R that have effects on the species difference of cuticular hydrocarbon profile. (Coyne, 1996)
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	Df(3L)st-4 (Bedian, 1998.10.2) Df(3L)st 4 (Cunniff et al., 1997) Df(3L)st4 (Jung et al., 2007, Cooper and Kennison, 2011) Df(3L)st.4 (Velissariou and Ashburner, 1981) Df(3L)st⁴ (Coyne, 1996, Andrew and Baker, 2008)
Name Synonym	Deficiency (3L) scarlet
Secondary FlyBase IDs

References ( 24 )

Generate a list of	All references relating to this aberration ( 24 )

List References by type	Research paper ( 19 ) Personal communication to FlyBase ( 3 ) FlyBase analysis ( 1 ) Book ( 1 )
Recent research papers ( 1 )
	Cooper and Kennison, 2011, PLoS ONE 6(8): e23509 Molecular Genetic Analyses of Polytene Chromosome Region 72A-D in Drosophila melanogaster Reveal a Gene Desert in 72D. [FBrf0214748] Show all research papers ...

Aberration Dmel\Df(3L)st4

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