A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Aberration Dmel\Df(3R)by62

General Information
SymbolDmel\Df(3R)by62SpeciesD. melanogaster
NameDeficiency (3R) blisteryFlyBase IDFBab0002716
Feature typechromosomal_deletionCreated / Updated2006-08-22/2006-08-22
Formalized genetic data
Sequence coordinates
Deleted segment
Duplicated segment
Computed Breakpoints include
Breakpoints Inherited  
hide Nature of the Aberration
Cytological Order
Progenitor
Tp(3;2)by62
 
Mutagen
segregation
 
Class of aberration (relative to progenitor)
chromosomal_deletion
(Belote, 2000.1.25)
Breakpoints
85D10-85D11;85F8-85F11
(Belote, 2000.1.25)
Causes alleles
Carries alleles
Transposon Insertions
Genetic mapping information
Comments
hide Comments on Cytology
There is no evidence of a 2:3 translocation. The rearrangment at 85D-F looks like a typical, conventional deficiency.
(Belote, 2000.1.25)
The description of Df(3R)by62 as a deficient translocation in FBrf0051508 was an error propagated from a typographical error in FBrf0069831. The original cytological description has been retrieved from the laboratory notebook of Ken Kemphues where the deficiency is clearly described as a transposition segregant.
(Bloomington Drosophila Stock Center, 2000.2.24)
hide Molecularly Mapped Breakpoints
 
hide Sequence Crossreferences
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
hide Gene Deletion & Duplication Data
hide Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
dmt
(Deak et al., 1997, Szeged Stock Center, 1998-)
hyd
(Mansfield et al., 1994)
eca
(Bartoszewski et al., 2004)
Scm
(Jurgens, 1985, Tearle and Nusslein-Volhard, 1987, Harbecke and Lengyel, 1995)
Kap-α3
(Deak et al., 1997, Szeged Stock Center, 1998-)
by
(Kemphues et al., 1980, Kemphues et al., 1983)
Ras85D
(Rogge et al., 1992, Begemann et al., 1995)
tws
(Uemura et al., 1993, BDGP Project Members, 1994-1999, Deak et al., 1997, Szeged Stock Center, 1998-, Spradling et al., 1999)
knk
(Harbecke and Lengyel, 1995, Beitel and Krasnow, 2000)
Fmr1
(Michel et al., 2004, Wan et al., 2000, Zhang et al., 2001, Dockendorff et al., 2002)
hty
(Szeged Stock Center, 1998-)
l(3)S105307
(Deak et al., 1997, Szeged Stock Center, 1998-)
l(3)S056113
(Deak et al., 1997, Szeged Stock Center, 1998-)
l(3)S049217d
(Deak et al., 1997)
l(3)S026430
(Deak et al., 1997, Szeged Stock Center, 1998-)
l(3)S026409a
(Deak et al., 1997, Szeged Stock Center, 1998-)
l(3)S026115b
(Deak et al., 1997, Szeged Stock Center, 1998-)
l(3)S019203
(Deak et al., 1997, Szeged Stock Center, 1998-)
l(3)S007934
(Deak et al., 1997, Szeged Stock Center, 1998-)
dc
(Craig and Brink, 1996)
l(3)S070806c
(Deak et al., 1997)
l(3)S066208
(Deak et al., 1997)
l(3)S065312b
(Deak et al., 1997)
l(3)S082414a
(Deak et al., 1997)
Mow
(Bhadra and Birchler, 1996)
l(3)S022122b
(Deak et al., 1997)
l(3)S037906
(Deak et al., 1997)
sd-10
(Babcock et al., 2003)
l(3)S142814b
(Deak et al., 1997)
ms(3)85E
(Matthews, 1998.8.27)
l(3)S088712b
(Deak et al., 1997)
tet
(Uemura et al., 1993)
l(3)S023014b
(Deak et al., 1997)
l(3)85Ee
(Lindsley and Zimm, 1992)
l(3)S012225a
(Deak et al., 1997)
Invadolysin
(McHugh, 1999.10.4)
Molecular Data
hide Genes NOT Deleted / Disrupted
Complementation Data
sens
(Salzberg et al., 1997, Szeged Stock Center, 1998-)
Aats-trp
(BDGP Project Members, 1994-1999, Spradling et al., 1999)
pum
(BDGP Project Members, 1994-1999, Spradling et al., 1999)
Ras85D
(Simon et al., 1991, BDGP Project Members, 1994-1999, Fischer et al., 1997, Spradling et al., 1999)
RhoL
(Sasamura et al., 1997)
jumu
(BDGP Project Members, 1994-1999, Spradling et al., 1999)
cpo
(BDGP Project Members, 1994-1999)
l(3)01728
(BDGP Project Members, 1994-1999, Spradling et al., 1999)
l(3)j9A5
(Spradling et al., 1999)
l(3)04837
(BDGP Project Members, 1994-1999)
l(3)05430
(BDGP Project Members, 1994-1999)
stretch
(BDGP Project Members, 1994-1999)
l(3)s2681
(BDGP Project Members, 1994-1999, Spradling et al., 1999)
l(3)S126705
(Szeged Stock Center, 1998-)
Su(var)3-4
(Reuter et al., 1986)
l(3)S033513
(Mason et al., 2003)
Molecular Data
hide Genes Duplicated
Complementation Data
Molecular Data
hide Genes NOT Duplicated
Complementation Data
Molecular Data
hide Related Comments
hide Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations
Deficient embryos show an uninterpretable mutant midgut phenotype.
(Bilder and Scott, 1995)
Does not cause unconditional lethality in hybrid females when heterozygous with D.simulans chromosome.
(Coyne et al., 1998)
Does not show a dose-sensitive interaction with pbhs.PB.
(Boube et al., 1997)
Dominantly causes tergite defects in less than 50% of run3 heterozygotes.
(Duffy et al., 1996)
Embryonic lethal.
(Mansfield et al., 1994)
Heterozygosity for this deletion has no effect on the mutant ovarian phenotype of ovoD2.
(Pauli et al., 1995)
Homozygous embryos show defects in cell divisions.
(Harbecke and Lengyel, 1995)
No second site non-complementing phenotype with zipEbr and zipmhc-c6.1.
(Halsell and Kiehart, 1998)
Shows dominant enhancement of dominant haltere phenotype caused by Ubx195 and Ubx9.22.
(Burnette et al., 1999)
Shows no maternal enhancement of dpphr4.
(Nicholls and Gelbart, 1998)
Suppressor of the dosage dependent (two or more copies of P{sev-svp1} or P{sev-svp2}) transformation of cone cells into R7 photoreceptors and at a lower frequency R7 cells into outer photoreceptors.
(Begemann et al., 1995)
The Df(3R)by62 chromosome acts as a dominant moderate suppressor of telomeric silencing (assayed using the effect of the chromosome on the eye colour phenotype of flies carrying "P{wvar}KR3-2", a stable
(Mason et al., 2004)
hide Position Effect Variegation Data
  
hide Stocks ( 3 )
Bloomington
1893
Df(3R)by62, red1/TM1, pp
Kyoto
106724
Df(3R)by62, red1/TM1, pp
103357
Df(3R)by62, red1 e1 / TM1, Me1 kniri-1 Sbsbd-l
hide Notes on Origin
Discoverer
hide Balancer / Genotype Variants of the Aberration
    hide Separable Components
      hide Other Comments
      hide Synonyms & Secondary IDs ( 6 )
      Reported As
      Symbol Synonym
      Df(3R)by61
      (Deak et al., 1997, )
      Df(3R)by-62
      (Boube et al., 1997, Mayer-Jaekel and Hemmings, 1995)
      Df(3R)by62
      (Neuburger et al., 2006, Wilson et al., 2006, Michel et al., 2004)
      Df(3R)by62
      (Kemphues et al., 1980, Craig and Brink, 1996, Bhadra and Birchler, 1996, Reuter et al., 1986, Jurgens, 1985, Mansfield et al., 1994, Shiomi et al., 1994)
      Df(3R) by62
      (Kemphues, 1981)
      Name Synonym
      Deficiency (3R) blistery
       
      Secondary FlyBase IDs
      • FBab0002715
      hide References ( 69 )
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      hide Recent research papers ( 2 )
      Neuburger et al., 2006, Genetics 173(3): 1377--1387
      A genetic suppressor of two dominant temperature-sensitive lethal proteasome mutants of Drosophila melanogaster is itself a mutated proteasome subunit gene. [FBrf0194466]
      Wilson et al., 2006, Genetics 173(3): 1455--1463
      High-resolution mapping of quantitative trait loci affecting increased life span in Drosophila melanogaster. [FBrf0194188]
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