FlyBase Aberration Report: Dmel\Df(3R)crb87-5

FB2025_01 , released February 20, 2025

FB2025_01 , released February 20, 2025

Aberration: Dmel\Df(3R)crb87-5

General Information

Symbol

Df(3R)crb87-5

Species

D. melanogaster

Name

FlyBase ID

FBab0002749

Feature type

chromosomal_deletion

Also Known As

Df(3R)crbS87-5, Df(3R)S87-5, Df(3R)crb^87-5, Df(3R)S87.5e

Computed Breakpoints include

95F7;96A18

Features within 95F8--96A20 (Estimated cytology)

Genomic Maps

Sequence coordinates

3R:24,253,317..24,275,065 (Df(3R)crb87-5:bk1)

(Cook et al., 2010.2.12)

3R:24,718,454..24,761,404 (Df(3R)crb87-5:bk2)

(Cook et al., 2010.2.12)

Member of large scale dataset(s)

Nature of Aberration

Cytological Order

Progenitor

Mutagen

(Tepass and Knust, 1990)

Class of aberration (relative to wild type)

chromosomal_deletion

(Cook et al., 2010.2.12, FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Deak et al., 1997, Cobb, 1996, Pereira et al., 1995, Kellerman and Miller, 1992, Wustmann et al., 1989)

Breakpoints

95F7-95F9;96A17-96A18

(Deak et al., 1997, Pereira et al., 1995, Wustmann et al., 1989)

95F7;96A18

(Kellerman and Miller, 1992)

95F7;96A17-96A18

(Cobb, 1996)

Causes alleles

(Morrison and Miller, 2008)

Carries alleles

Transposon Insertions

Formalized genetic data

bk1 << l(3)96Ac << l(3)96Ab << bk2 << tld

Genetic mapping information

Comments

Comments on Cytology

The left Df(3R)crb87-5 breakpoint lies within jar or Orct2 or in the region between them, and lies in the range 3R:20079039..20100787 (R5) (predicted cytology: 95F6-95F8).

(Cook et al., 2010.2.12)

The right Df(3R)crb87-5 breakpoint lies within CG13630 or tok or in the region between them, and lies in the range 3R:20544176..20587126 (R5) (predicted cytology: 96A18-96A20).

(Cook et al., 2010.2.12)

Left limit of break 1 from polytene analysis (FBrf0050576) Right limit of break 1 from polytene analysis (FBrf0056451) Left limit of break 2 from polytene analysis (FBrf0056451) Right limit of break 2 from polytene analysis (FBrf0050576)

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

(Cobb, 1996)

(Adamson and Shearn, 1996)

(Muller, 2005, Spradling et al., 1999, BDGP Project Members, 1994-1999)

(Spradling et al., 1999, Szeged Stock Center, 1998-, Deak et al., 1997, Cobb, 1996, BDGP Project Members, 1994-1999)

(Ghabrial et al., 2011)

(Pereira et al., 1995)

(Kankel et al., 2004)

(Cobb, 1996)

(Millo et al., 2004, Spradling et al., 1999, BDGP Project Members, 1994-1999, Castrillon et al., 1993, Kellerman and Miller, 1992)

(Adamson and Shearn, 1996)

(Adamson and Shearn, 1996)

(Szeged Stock Center, 1998-, Deak et al., 1997)

(Deak et al., 1997)

(Szeged Stock Center, 1998-, Deak et al., 1997)

(Deak et al., 1997)

(Szeged Stock Center, 1998-, Deak et al., 1997)

(Deak et al., 1997)

(Deak et al., 1997)

(Szeged Stock Center, 1998-, Deak et al., 1997)

(Szeged Stock Center, 1998-, Deak et al., 1997)

(Szeged Stock Center, 1998-, Deak et al., 1997)

(Sekelsky et al., 1999)

(Neubueser et al., 2005)

(Perry et al., 2008)

(Babcock et al., 2003)

(Tomaru et al., 2018)

(Adamson and Shearn, 1996, Atkinson et al., 1991)

Partially deleted / disrupted

(Petritsch et al., 2003)

(Adamson and Shearn, 1996)

Molecular Data

Completely deleted

Partially deleted

(Morrison and Miller, 2008)

Genes NOT Deleted / Disrupted

Complementation Data

(Cobb, 1996)

(Perotti et al., 2001)

(Bienz, 2003.9)

(Bienz, 2003.9)

(Bienz, 2003.9)

(Bienz, 2003.9)

(Bienz, 2003.9)

(Bienz, 2003.9)

(Bienz, 2003.9)

(Bienz, 2003.9)

(Bienz, 2003.9)

(Bienz, 2003.9)

(Adamson and Shearn, 1996)

(Spradling et al., 1999)

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

(Szeged Stock Center, 1998-)

(Cobb, 1996)

(Spradling et al., 1999)

(Adamson and Shearn, 1996)

Molecular Data

(Morrison and Miller, 2008)

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location (86)

Related Comments

Partially complements l(3)96Ac^291.6.

(Adamson and Shearn, 1996)

Phenotypic Data

In combination with other aberrations

Df(3R)jar³²² is male sterile and viable in combination with Df(3R)crb87-5.

(Petritsch et al., 2003)

No effect on In(1)w^m4h position-effect variegation.

(Wustmann et al., 1989)

NOT in combination with other aberrations

Heterozygosity for Df(3R)crb87-5 results in 3.0% X chromosome nondisjunction and 1.5% fourth chromosome nondisjunction in In(1)FM7/X ; sv^spa-pol females.

(Harris et al., 2003)

Shows dominant enhancement of dominant haltere phenotype caused by Ubx¹⁹⁵ and Ubx^9.22.

(Burnette et al., 1999)

Does not cause unconditional lethality in hybrid females when heterozygous with D.simulans chromosome.

(Coyne et al., 1998)

No second site non-complementing phenotype with zip^Ebr and zip^mhc-c6.1.

(Halsell and Kiehart, 1998)

Shows no maternal enhancement of dpp^hr4.

(Nicholls and Gelbart, 1998)

Mutant nonanol phenotype.

(Cobb, 1996)

Deficient embryos show an uninterpretable mutant midgut phenotype.

(Bilder and Scott, 1995)

Stocks (3)

2363

Df(3R)crb87-5, st¹ e¹/TM3, Ser¹

65610

w^*; P{Hsp83-jar.GFP}2; Df(3R)crb87-5, st¹ e¹/TM3, Sb¹

107284

Df(3R)crb87-5, st¹ e¹/TM3, Ser¹

Notes on Origin

Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Synonyms and Secondary IDs (15)

Reported As

Symbol Synonym

DF(3R)crb87-5

(Harris et al., 2003)

Df s-87.5

(Noguchi et al., 2006)

Df(3L)Crb87-5

(Beaven et al., 2015)

Df(3R)S87-5

(Hurd et al., 2016, Morrison and Miller, 2008, Hicks et al., 1999, Adamson and Shearn, 1996, Leibovitch et al., 1995, Kellerman and Miller, 1992, Atkinson et al., 1991)

Df(3R)S87.5

(Frank et al., 2006, Kozel and Miller, 1996)

Df(3R)S87.5e

(Isaji et al., 2011, Noguchi et al., 2009)

Df(3R)crb-S87-5

Df(3R)crb87-5

(Ribot et al., 2022, Yoong et al., 2020, Tomaru et al., 2018, Galindo et al., 2014, Ghabrial et al., 2011, Cook et al., 2010.2.12, Steinhauer et al., 2009, Perry et al., 2008, Kirchner et al., 2007)

Df(3R)crb^87-5

(Petritsch et al., 2003, Ashton et al., 2001)

Df(3R)crb^S87-5

(Wustmann et al., 1989)

Df(3R)crbS87-5

(Harden et al., 2002, Firth et al., 2000, Sekelsky et al., 1999, Carrera et al., 1998, Coyne et al., 1998, Moore et al., 1998, Deak et al., 1997, Cobb, 1996, Bilder and Scott, 1995, Castrillon et al., 1993)

Df-S87.5

(Noguchi et al., 2006)

Df2363

(Perry et al., 2008)

Df87-5

(Millo et al., 2004)

crbS87-5

(Yamaguchi et al., 1999)

Name Synonyms

Secondary FlyBase IDs

References (66)

Report Sections