FlyBase Aberration Report: Dmel\Df(3R)e-R1

General Information

Symbol

Df(3R)e-R1

Species

D. melanogaster

Name

Deficiency (3R) ebony

FlyBase ID

FBab0002783

Feature type

chromosomal_deletion

Also Known As

Df(3R)e^R1, Df(3R)e-RI

Computed Breakpoints include

93B6;93D3-93D4

Features within 93B6--93D4

Sequence coordinates

Member of large scale dataset(s)

Nature of Aberration

Cytological Order

Progenitor

Mutagen

X ray

Class of aberration (relative to wild type)

chromosomal_deletion

(FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Jiang and Struhl, 1998, Duffy et al., 1996, Harbecke and Lengyel, 1995, Eisenberg et al., 1990, Mohler and Pardue, 1982)

Breakpoints

93B6-93B7;93D2

(Eisenberg et al., 1990, Mohler and Pardue, 1982)

93B3-93B5;93D2-93D4

(Jiang and Struhl, 1998, Duffy et al., 1996, Harbecke and Lengyel, 1995)

Causes alleles

Carries alleles

Transposon Insertions

Formalized genetic data

l(3)j2B1 << bk1 << l(3)neo54 << l(3)93Cc << bk2 << l(3)93Da

Genetic mapping information

Comments

Break at 93D maps approximately 45kb upstream of the Hsrω transcription unit.

(Lakhotia and Tapadia, 1998)

Comments on Cytology

Left limit of break 1 from polytene analysis (FBrf0037655) Right limit of break 1 from inclusion of Mvl (FBrf0082530) Left limit of break 2 from inclusion of e (FBrf0040940) Right limit of break 2 from polytene analysis (FBrf0082073)

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

Atpα

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

(Mohler and Pardue, 1984)

EY3-2

(Rebay et al., 2000)

EY3-3

(Rebay et al., 2000)

l(3)93Ba

(Eisenberg et al., 1990, Mohler and Pardue, 1984)

l(3)93Bb

(Eisenberg et al., 1990, Mohler and Pardue, 1984)

l(3)93Be

(Eisenberg et al., 1990)

l(3)93Bf

(Eisenberg et al., 1990)

l(3)93Bg

(Eisenberg et al., 1990)

l(3)93Bh

(Eisenberg et al., 1990)

l(3)93Ca

(Mohler and Pardue, 1984)

l(3)93Cb

(Mohler and Pardue, 1984)

l(3)93Cc

(Mohler and Pardue, 1984)

l(3)93Cd

(Mohler and Pardue, 1984)

l(3)03773

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

l(3)neo54

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

l(3)neo55

(BDGP Project Members, 1994-1999)

l(3)S026420

(Szeged Stock Center, 1998-)

lncRNA:Hsrω

(BDGP Project Members, 1994-1999)

mod(mdg4)

(BDGP Project Members, 1994-1999)

Mvl

(Rodrigues et al., 1995)

ppan

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

Rab11

(Giansanti et al., 2007, Jankovics et al., 2001, Spradling et al., 1999, BDGP Project Members, 1994-1999, Eisenberg et al., 1990)

r-l

(Eisenberg et al., 1990)

rtet

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

Sec15

(Mehta et al., 2005)

slmb

(Wojcik et al., 2000, Spradling et al., 1999, Jiang and Struhl, 1998, BDGP Project Members, 1994-1999)

SNF4Aγ

(Lippai et al., 2008)

Partially deleted / disrupted

Molecular Data

Completely deleted

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

Molecular Data

Calx

(Wang et al., 2005)

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location (0)

If no genes are listed here, it may be because the affected region is very large. The JBrowse insert above may show an error for the same reason, and other FlyBase tools such as CytoSearch may also fail for large regions. You can contact FlyBase for more help.
In these cases, there will be no "Export to Hitlist" button to the left.

Related Comments

Phenotypic Data

In combination with other aberrations

NOT in combination with other aberrations

Only the distal tip of the salivary gland turns in embryos homozygous for Df(3R)e-R1 by stage 14.

(Jattani et al., 2009)

The Df(3R)e-R1 chromosome does not act as a dominant suppressor of telomeric silencing (assayed using the effect of the chromosome on the eye colour phenotype of flies carrying "P{w^var}KR3-2", a stable "brown-red" variant of the P{3'WP-2,w^var}2Lt insertion).

(Mason et al., 2004)

Does not cause unconditional lethality in hybrid females when heterozygous with D.simulans chromosome.

(Coyne et al., 1998)

No second site non-complementing phenotype with zip^Ebr and zip^mhc-c6.1.

(Halsell and Kiehart, 1998)

Normal development and heat shock-induced expression of the 93D puff are unaffected. The amide responsivity of the chromosome is normal. Dosage compensation is abolished as is the effect of β-alanine levels on its heat shock inducibility.

(Lakhotia and Tapadia, 1998)

Shows no maternal enhancement of dpp^hr4.

(Nicholls and Gelbart, 1998)

Dominantly causes tergite defects in less than 50% of run³ heterozygotes.

(Duffy et al., 1996)

Midgut development of mutant embryos is wild type.

(Bilder and Scott, 1995)

Homozygous embryos have no amnioserosa.

(Harbecke and Lengyel, 1995)

Df(3R)e-R1/+ heterozygotes show normal responses to sugars and to other taste stimuli.

(Rodrigues et al., 1995)

Stocks (2)

Bloomington

3340

Df(3R)e-R1, Ki¹/TM3, Sb¹ Ser¹

Kyoto

106988

Df(3R)e-R1, Ki¹/TM3, Sb¹ Ser¹

Notes on Origin

Discoverer

B.S. Baker.

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Chromosome puffs at 93D upon heat induction.

(Mohler and Pardue, 1982)

Synonyms and Secondary IDs (12)

Reported As

Symbol Synonym

Def3340

(Angelova et al., 2020)

Df(3R)3-R1

(Jiang and Struhl, 1998)

Df(3R)e-R1

(Francis et al., 2022, Pan et al., 2022, Ribot et al., 2022, Nagarkar-Jaiswal et al., 2017, Galindo et al., 2014, Morais-de-Sá et al., 2014, Fernandes and Rao, 2011, Wang et al., 2010, Jattani et al., 2009, Sasikumar and Roy, 2009, Giansanti et al., 2007, Takahashi et al., 2007, Khodosh et al., 2006, Mehta et al., 2005, Wang et al., 2005, Heriche et al., 2003)

Df(3R)e-RI

(Katsube et al., 2001)

Df(3R)e-Ri

(Coyne et al., 1998)

Df(3R)e^R-1

(Lakhotia and Tapadia, 1998)

Df(3R)e^R1

(Wojcik et al., 2000, Rodrigues et al., 1995, Eisenberg et al., 1990, Stevens et al., 1990, Mohler and Pardue, 1984, Mohler and Pardue, 1982)

Df(3R)eR1

(Krishnan and Basole, 1999.4.2)

SNF4Aγ^Df

(Nagarkar-Jaiswal et al., 2017)

e-R1

(Yamaguchi et al., 2001)

eR1

(Lippai et al., 2008)

Name Synonyms

Deficiency (3R) ebony

Secondary FlyBase IDs

FBab0028100

References (59)

Report Sections

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