FlyBase Aberration Report: Dmel\Df(3R)p-XT103

General Information

Symbol

Df(3R)p-XT103

Species

D. melanogaster

Name

Deficiency (3R) pink

FlyBase ID

FBab0002842

Feature type

chromosomal_deletion

Also Known As

Df(3R)pXT103, Df(3R)p^XT103, Df(3R)pXT¹⁰³, XT103, pXT103

Computed Breakpoints include

85A2;85C1-85C2

Deleted Segment

85A1--85C1 (Estimated cytology)

Genomic Maps

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Sequence coordinates

3R:8,420,098..8,510,285 (Df(3R)p-XT103:bk1)

(Cook et al., 2010.2.12)

3R:8,952,955..8,983,469 (Df(3R)p-XT103:bk2)

(Cook et al., 2010.2.12)

Member of large scale dataset(s)

Nature of Aberration

Cytological Order

Progenitor

Mutagen

X ray

(Lehmann and Nusslein-Volhard, 1987)

Class of aberration (relative to wild type)

chromosomal_deletion

(Cook et al., 2010.2.12, FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Bhadra and Birchler, 1996, Chen et al., 1996, Lehmann and Nusslein-Volhard, 1987)

Breakpoints

85A2;85C1-85C2

(Bhadra and Birchler, 1996, Chen et al., 1996, Lehmann and Nusslein-Volhard, 1987)

Causes alleles

Carries alleles

Transposon Insertions

Formalized genetic data

puc << bk1 << p << osk << bk2 << neur

Genetic mapping information

Comments

Breakpoint(s) molecularly mapped

(Kim-Ha et al., 1991, Ephrussi, 1990)

Comments on Cytology

The left Df(3R)p-XT103 breakpoint lies within CG31369 either within the intronic gene Or85b or to its left in the range 3R:4245820 ..4336007 (R5) (predicted cytology: 85A1-2). The right Df(3R)p-XT103 breakpoint lies within CG11966, CG11967 or RagA or in a region between them, and lies in the range 3R:4778677 ..4809191 (R5) (predicted cytology: 85B8-C1).

(Cook et al., 2010.2.12)

All limits from polytene analysis (FBrf0046026)

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

Cenp-C

(Heeger et al., 2005)

(Lehmann and Nusslein-Volhard, 1987)

ich

(Ghabrial et al., 2011)

l(3)S023941c

(Szeged Stock Center, 1998-)

l(3)S075101

(Szeged Stock Center, 1998-)

l(3)S128711

(Szeged Stock Center, 1998-)

osk

(Markussen et al., 1995, Ephrussi and Lehmann, 1992, Ephrussi et al., 1991)

pyd

(Jung et al., 2006, Chen et al., 1996)

Partially deleted / disrupted

Molecular Data

Completely deleted

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

E(var)3-9

(Weiler, 2007)

fang

(Myat et al., 2005)

gloin

(Myat et al., 2005)

Gyc76C

(Myat et al., 2005)

lds

(Szalontai et al., 2009)

Mow

(Bhadra and Birchler, 1996)

mtg

(Rohrbough et al., 2007)

neur

(Szeged Stock Center, 1998-, Tearle and Nusslein-Volhard, 1987)

puc

(Salzberg et al., 1994)

pum

(Tearle and Nusslein-Volhard, 1987)

Sec23

(Giesen, 2001.1.24)

Molecular Data

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Related Comments

Phenotypic Data

In combination with other aberrations

NOT in combination with other aberrations

Df(3R)p-XT103 embryos have disrupted tracheal branches.

(Myat et al., 2005)

The Df(3R)p-XT103 chromosome does not act as a dominant suppressor of telomeric silencing (assayed using the effect of the chromosome on the eye colour phenotype of flies carrying "P{w^var}KR3-2", a stable "brown-red" variant of the P{3'WP-2,w^var}2Lt insertion).

(Mason et al., 2004)

Heterozygosity for Df(3R)p-XT103 results in 8.9% X chromosome nondisjunction and 1.0% fourth chromosome nondisjunction in In(1)FM7/X ; sv^spa-pol females.

(Harris et al., 2003)

No second site non-complementing phenotype with zip^Ebr and zip^mhc-c6.1.

(Halsell and Kiehart, 1998)

Deficient embryos show an uninterpretable mutant midgut phenotype.

(Bilder and Scott, 1995)

One copy of osk causes to the formation of 10-15 pole cells.

(Ephrussi and Lehmann, 1992)

Stocks (1)

Kyoto

106727

Df(3R)p-XT103, ru¹ st¹ e¹ ca¹/TM3, Sb¹

Notes on Origin

Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Synonyms and Secondary IDs (18)

Reported As

Symbol Synonym

(Zimyanin et al., 2007)

Df(3R)PXT-103

(Lehmann, 1988)

Df(3R)Pxt103

(Kistler et al., 2018)

Df(3R)XT103

(Seppa et al., 2008)

Df(3R)p-XT103

(Liu et al., 2015, Galindo et al., 2014, Sanghavi et al., 2012, Djiane et al., 2011, Fernandes and Rao, 2011, Ghabrial et al., 2011, Cook et al., 2010.2.12, Nagai et al., 2010, Joyce and McKim, 2009, Moore et al., 2009, Szalontai et al., 2009, Rohrbough et al., 2007, Weiler, 2007, Jung et al., 2006, Wilson et al., 2006)

Df(3R)p-Xt103

(Halsell and Kiehart, 1998)

Df(3R)p^XT03

(Besse et al., 2009)

Df(3R)p^XT103

(Jambor et al., 2014, Tsai et al., 2014, Jambor et al., 2011, Tanaka and Nakamura, 2008, Snee et al., 2007, Zimyanin et al., 2007, Jenny et al., 2006, Myat et al., 2005, Hachet and Ephrussi, 2004, Vanzo and Ephrussi, 2002, Kim-Ha et al., 1995, Ephrussi and Lehmann, 1992, MacDonald, 1992, Ephrussi et al., 1991, Kim-Ha et al., 1991)

Df(3R)p^xt103

(Morais-de-Sá et al., 2013, Wolfgang and Forte, 1995)

Df(3R)pXT103

(Ghosh et al., 2014, Choi et al., 2011, Anne, 2010, Zimyanin et al., 2008, Jones and Macdonald, 2007, Beckett and Baylies, 2006, Irion et al., 2006, Anne and Mechler, 2005, Harris et al., 2003, Giesen, 2001.1.24, Firth et al., 2000, Shulman et al., 2000, Carrera et al., 1998, Chen et al., 1996, Bilder and Scott, 1995, Salzberg et al., 1994)

Df(3R)pXT¹⁰³

(Gaspar et al., 2014, Vazquez-Pianzola et al., 2011, Wilson et al., 1996)

Df(3R)pxt-1o3

(Lehmann, 1988)

XT103

(Provost et al., 2006, Heeger et al., 2005)

osk Def

(Sanghavi et al., 2016)

osk^def

(Liu et al., 2015)

oskDf(3R)p^XT103

(Munro et al., 2006)

pXT103

(Goossens et al., 2011, Yamaguchi et al., 1999)

Name Synonyms

Deficiency (3R) pink

Secondary FlyBase IDs

References (88)

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