FB2020_06, released Dec 22, 2020

Aberration: Dmel\Df(3R)p-XT103

Open Close
General Information
Symbol
Df(3R)p-XT103
Species
D. melanogaster
Name
Deficiency (3R) pink
FlyBase ID
FBab0002842
Feature type
chromosomal_deletion
Also Known As
Df(3R)pXT103, Df(3R)pXT103, Df(3R)pXT103, XT103, pXT103
Computed Breakpoints include

85A2;85C1-85C2

Features within 85A1--85C1 (Estimated cytology)
Genomic Maps
Sequence coordinates
3R:8,420,098..8,510,285 (Df(3R)p-XT103:bk1)
(Cook et al., 2010.2.12)
3R:8,952,955..8,983,469 (Df(3R)p-XT103:bk2)
(Cook et al., 2010.2.12)
Member of large scale dataset(s)
Nature of Aberration
Cytological Order
Progenitor
Mutagen
X ray
(Lehmann and Nusslein-Volhard, 1987)
Class of aberration (relative to wild type)
chromosomal_deletion
(Cook et al., 2010.2.12, FlyBase, 2007)
Class of aberration (relative to progenitor)
chromosomal_deletion
(Bhadra and Birchler, 1996, Chen et al., 1996, Lehmann and Nusslein-Volhard, 1987)
Breakpoints

85A2;85C1-85C2

(Bhadra and Birchler, 1996, Chen et al., 1996, Lehmann and Nusslein-Volhard, 1987)
Causes alleles
Carries alleles
Transposon Insertions
Formalized genetic data

puc << bk1 << p << osk << bk2 << neur

Genetic mapping information
Comments

Breakpoint(s) molecularly mapped

(Kim-Ha et al., 1991, Ephrussi, 1990)
Comments on Cytology

The left Df(3R)p-XT103 breakpoint lies within CG31369 either within the intronic gene Or85b or to its left in the range 3R:4245820..4336007 (R5) (predicted cytology: 85A1-2). The right Df(3R)p-XT103 breakpoint lies within CG11966, CG11967 or RagA or in a region between them, and lies in the range 3R:4778677..4809191 (R5) (predicted cytology: 85B8-C1).

(Cook et al., 2010.2.12)

All limits from polytene analysis (FBrf0046026)

Sequence Crossreferences
DDBJ / EMBL / GenBank
DNA sequence
Protein sequence
Gene Deletion and Duplication Data
Genes Deleted / Disrupted
Genes NOT Deleted / Disrupted
Genes Duplicated
Complementation Data
Completely duplicated
Partially duplicated
Molecular Data
Completely duplicated
Partially duplicated
Genes NOT Duplicated
Complementation Data
 
Molecular Data
 
Affected Genes Inferred by Location
Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations

Df(3R)p-XT103 embryos have disrupted tracheal branches.

(Myat et al., 2005)

The Df(3R)p-XT103 chromosome does not act as a dominant suppressor of telomeric silencing (assayed using the effect of the chromosome on the eye colour phenotype of flies carrying "P{wvar}KR3-2", a stable "brown-red" variant of the P{3'WP-2,wvar}2Lt insertion).

(Mason et al., 2004)

Heterozygosity for Df(3R)p-XT103 results in 8.9% X chromosome nondisjunction and 1.0% fourth chromosome nondisjunction in In(1)FM7/X ; svspa-pol females.

(Harris et al., 2003)

No second site non-complementing phenotype with zipEbr and zipmhc-c6.1.

(Halsell and Kiehart, 1998)

Deficient embryos show an uninterpretable mutant midgut phenotype.

(Bilder and Scott, 1995)

One copy of osk causes to the formation of 10-15 pole cells.

(Ephrussi and Lehmann, 1992)
Stocks (1)
Notes on Origin
Discoverer
 
Balancer / Genotype Variants of the Aberration
 
Separable Components
 
Other Comments
 
Synonyms and Secondary IDs (19)
Reported As
Symbol Synonym
Df
(Zimyanin et al., 2007)
Df(3R)pXT103
(Lee et al., 2020)
Df(3R)PXT-103
(Lehmann, 1988)
Df(3R)Pxt103
(Kistler et al., 2018)
Df(3R)XT103
(Seppa et al., 2008)
Df(3R)p-XT103
(Liu et al., 2015, Galindo et al., 2014, Sanghavi et al., 2012, Djiane et al., 2011, Fernandes and Rao, 2011, Ghabrial et al., 2011, Cook et al., 2010.2.12, Nagai et al., 2010, Joyce and McKim, 2009, Moore et al., 2009, Szalontai et al., 2009, Rohrbough et al., 2007, Weiler, 2007, Jung et al., 2006, Wilson et al., 2006)
Df(3R)p-Xt103
(Halsell and Kiehart, 1998)
Df(3R)pXT03
(Besse et al., 2009)
Df(3R)pXT103
(Jambor et al., 2014, Tsai et al., 2014, Jambor et al., 2011, Tanaka and Nakamura, 2008, Snee et al., 2007, Zimyanin et al., 2007, Jenny et al., 2006, Myat et al., 2005, Hachet and Ephrussi, 2004, Vanzo and Ephrussi, 2002, Kim-Ha et al., 1995, Ephrussi and Lehmann, 1992, MacDonald, 1992, Ephrussi et al., 1991, Kim-Ha et al., 1991)
Df(3R)pxt103
(Morais-de-Sá et al., 2013, Wolfgang and Forte, 1995)
Df(3R)pXT103
(Ghosh et al., 2014, Choi et al., 2011, Anne, 2010, Zimyanin et al., 2008, Jones and Macdonald, 2007, Beckett and Baylies, 2006, Irion et al., 2006, Anne and Mechler, 2005, Harris et al., 2003, Giesen, 2001.1.24, Firth et al., 2000, Shulman et al., 2000, Carrera et al., 1998, Chen et al., 1996, Bilder and Scott, 1995, Salzberg et al., 1994)
Df(3R)pXT103
(Gaspar et al., 2014, Vazquez-Pianzola et al., 2011, Wilson et al., 1996)
Df(3R)pxt-1o3
(Lehmann, 1988)
XT103
(Provost et al., 2006, Heeger et al., 2005)
osk Def
(Sanghavi et al., 2016)
oskdef
(Liu et al., 2015)
oskDf(3R)pXT103
(Munro et al., 2006)
pXT103
(Goossens et al., 2011, Yamaguchi et al., 1999)
Name Synonyms
Deficiency (3R) pink
Secondary FlyBase IDs
    References (89)