FlyBase Aberration Report: Dmel\Df(3R)p13

General Information

Symbol

Df(3R)p13

Species

D. melanogaster

Name

Deficiency (3R) pink

FlyBase ID

FBab0002853

Feature type

chromosomal_deletion

Also Known As

Df(3R)p¹³

Computed Breakpoints include

84F1;85A6-85B9

Features within 84F1--85B9

Sequence coordinates

Member of large scale dataset(s)

Nature of Aberration

Cytological Order

Progenitor

Mutagen

X ray

(Kemphues et al., 1980)

Class of aberration (relative to wild type)

chromosomal_deletion

(FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Chen et al., 1996, Ring and Martinez Arias, 1993, Baker et al., 1991, Bender et al., 1987, Kemphues et al., 1983)

Breakpoints

84F1;85A3

(Ring and Martinez Arias, 1993, Baker et al., 1991, Kemphues et al., 1983)

84F2;85A11

(Bender et al., 1987)

84F2;85B1

(Chen et al., 1996)

Causes alleles

Carries alleles

Transposon Insertions

Formalized genetic data

l(3)84Ef << bk1 << grn << hb << bk2 << pyd

Genetic mapping information

Comments

This deletion removes multiple ribosomal protein-coding genes (in addition to other genes).

(Marygold et al., 2007)

Distal breakpoint of Df(3R)p13 molecularly mapped to the DNA (Tautz et al., 1987)

Comments on Cytology

Limits of break 1 from polytene analysis (FBrf0054129) Left limit of break 2 from inclusion of hb (FBrf0047064) Right limit of break 2 from non-inclusion of pyd (FBrf0089614)

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

ato

(Gupta and Rodrigues, 1997, Baker et al., 1996, Begemann et al., 1995, Jarman et al., 1995, Jarman et al., 1994, Jarman et al., 1993)

bel

(Matthews, 2001.4.12, Castrillon et al., 1993)

CG7483

(Baker et al., 1991)

Dhod

(Porter and Rawls, 1984)

EG28

(Ma et al., 2009)

grn

(Brown and Castelli-Gair Hombria, 2000, Baker et al., 1991)

(Bender et al., 1988, Tautz et al., 1987)

l(3)84Fb

(Baker et al., 1991)

l(3)84Fc

(Baker et al., 1991)

l(3)84Fd

(Baker et al., 1991)

l(3)84Fe

(Baker et al., 1991)

l(3)84Ff

(Baker et al., 1991)

l(3)84Fg

(Baker et al., 1991)

l(3)84Fh

(Baker et al., 1991)

l(3)84Fj

(Baker et al., 1991)

l(3)84Fk

(Baker et al., 1991)

l(3)84Fl

(Baker et al., 1991)

l(3)84Fm

(Baker et al., 1991)

Mkk4

(Rallis et al., 2010, Weber et al., 2000, Paricio et al., 1999)

(Tautz et al., 1987, Kemphues et al., 1980)

Partially deleted / disrupted

Molecular Data

Completely deleted

mRpL1

(Marygold et al., 2007)

mRpL19

(Marygold et al., 2007)

mRpS18A

(Marygold et al., 2007)

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

ded

(Salzberg et al., 1994)

dsx

(Baker et al., 1991)

l(3)84Da

(Baker et al., 1991)

l(3)84Db

(Baker et al., 1991)

l(3)84Dc

(Baker et al., 1991)

l(3)84Dd

(Baker et al., 1991)

l(3)84Ea

(Baker et al., 1991)

l(3)84Eb

(Baker et al., 1991)

l(3)84Ec

(Baker et al., 1991)

l(3)84Ed

(Baker et al., 1991)

l(3)84Ee

(Baker et al., 1991)

l(3)84Ef

(Baker et al., 1991)

l(3)84Eg

(Baker et al., 1991)

l(3)84Ei

(Baker et al., 1991)

puc

(Ring and Martinez Arias, 1993, Baker et al., 1991)

pyd

(Chen et al., 1996)

(Baker et al., 1991)

sd-13

(Babcock et al., 2003)

αTub84B

(Hays et al., 1989)

Molecular Data

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location (0)

If no genes are listed here, it may be because the affected region is very large. The JBrowse insert above may show an error for the same reason, and other FlyBase tools such as CytoSearch may also fail for large regions. You can contact FlyBase for more help.
In these cases, there will be no "Export to Hitlist" button to the left.

Related Comments

Does not affect either the "roe" (roughened eye) or "rn" (rotund) functions of the rn locus.

(Baker et al., 1991)

Phenotypic Data

In combination with other aberrations

Viable in combination with In(3R)rn^Dipr or In(3R)rn^Dipr+R5. Lethal in combination with In(3R)rn^Dipr+R1, In(3R)rn^Dipr+R2, In(3R)rn^Dipr+R4, In(3R)rn^Dipr+R7, In(3R)rn^Dipr+R8 or In(3R)rn^Dipr+R9.

(Kerridge, 1981)

NOT in combination with other aberrations

Df(3R)p13 flies show no dominant effect on adult eye morphology at either 18[o] or 29[o]C.

(Melicharek et al., 2008)

Flies heterozygous for the deletion do not show a Minute bristle phenotype.

(Marygold et al., 2007)

The Df(3R)p13 chromosome does not act as a dominant suppressor of telomeric silencing (assayed using the effect of the chromosome on the eye colour phenotype of flies carrying "P{w^var}KR3-2", a stable "brown-red" variant of the P{3'WP-2,w^var}2Lt insertion).

(Mason et al., 2004)

Suppresses the ommatidial polarity phenotype of dsh^hs.sev.B. Suppresses the ommatidial polarity phenotype of msn^EP549 when driven by Scer\GAL4^hs.2sev.

(Paricio et al., 1999)

No interaction with P{sev-svp1} or P{sev-svp2} exists.

(Begemann et al., 1995)

Df(3R)p13/Df(3R)dsx29 heterozygotes lack all ventral chordotonal organs and usually all scolopodia of lch5. External sense organs are essentially unaffected.

(Jarman et al., 1993)

Males fertile when in combination with αTub84B⁷.

(Hays et al., 1989)

Homozygotes exhibit an hb^- phenotype.

(Bender et al., 1988)

Stocks (3)

Bloomington

1943

Df(3R)p13, red¹ e¹/TM3, Sb¹

Kyoto

101616

Df(3R)p13, e¹ / TM3, Sb¹

106592

Df(3R)p13, red¹ e¹/TM3, Sb¹

Notes on Origin

Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Distal breakpoint is at position +64kb of the molecular map of the hb domain.

(Bender et al., 1988)

Synonyms and Secondary IDs (9)

Reported As

Symbol Synonym

Df(3R)^p13

(Jhaveri et al., 2000)

Df(3R)p-13

(Jarman et al., 1994)

Df(3R)p13

(Scalzotto et al., 2022, Zhou et al., 2017, Amcheslavsky et al., 2014, Liu and Ma, 2013, Distefano et al., 2012, Rallis et al., 2010, Benton et al., 2009, Ma et al., 2009, Melicharek et al., 2008, Brodu et al., 2004)

Df(3R)pl³

(Begemann et al., 1995)

Df(ato)

(Melicharek et al., 2008)

Dfp13

(Brown and Castelli-Gair Hombria, 2000)

Dfp¹³

(Baker and Yu, 1998)

Name Synonyms

Deficiency (3R) pink

Secondary FlyBase IDs

References (60)

Report Sections

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