FlyBase Aberration Report: Dmel\Df(3R)ry615

General Information

Symbol

Df(3R)ry615

Species

D. melanogaster

Name

Deficiency (3R) rosy

FlyBase ID

FBab0002910

Feature type

chromosomal_deletion

Also Known As

Df(3R)ry⁶¹⁵, ry615

Computed Breakpoints include

87B12;87E8

Features within 87B10--87E8 (Estimated cytology)

Genomic Maps

JBrowse

Sequence coordinates

3R:12,443,659..12,446,934 (Df(3R)ry615:bk1)

(Cook et al., 2010.2.12)

3R:13,355,321..13,365,155 (Df(3R)ry615:bk2)

(Cook et al., 2010.2.12)

Member of large scale dataset(s)

Nature of Aberration

Cytological Order

Progenitor

Mutagen

X ray

Class of aberration (relative to wild type)

chromosomal_deletion

(Cook et al., 2010.2.12, FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Bhadra and Birchler, 1996, Duffy et al., 1996, Harbecke and Lengyel, 1995, Pauli et al., 1995, Fyrberg et al., 1994, Gausz et al., 1981, Hall and Kankel, 1976)

Breakpoints

87B12-87B15;87E8-87E11

(Hall and Kankel, 1976)

87B11-87B13;87E8-87E11

(Bhadra and Birchler, 1996, Duffy et al., 1996, Harbecke and Lengyel, 1995, Pauli et al., 1995, Gausz et al., 1981)

87B12;87E11

(Fyrberg et al., 1994)

Causes alleles

Carries alleles

Transposon Insertions

Formalized genetic data

l(3)87Bh << bk1 << l(3)87Bm << Ace << bk2 << l(3)05137

Genetic mapping information

Comments

Comments on Cytology

The left Df(3R)ry615 breakpoint lies within desat1 (FBgn0086687) in the range 3R:8269381..8272656 (R5) (predicted cytology: 87B10-87B11).

(Cook et al., 2010.2.12)

The right Df(3R)ry615 breakpoint lies within mthl12 or CG8790 or in the region between them, and lies in the range 3R:9181043..9190877 (R5) (predicted cytology: 87E7-87E8).

(Cook et al., 2010.2.12)

Left limit of break 1 from polytene analysis (FBrf0028767) Right limit of break 1 from polytene analysis (FBrf0076870) Left limit of break 2 from polytene analysis (FBrf0028767) Right limit of break 2 from non-inclusion of l(3)05137 (FBrf0067338)

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

Partially deleted / disrupted

Molecular Data

Completely deleted

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

aurA

(Gausz et al., 1981)

Elp6

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

Hsp70Aa

(Gausz et al., 1981)

l(3)86Fa

(Gausz et al., 1981)

l(3)86Fb

(Gausz et al., 1981)

l(3)86Fc

(Gausz et al., 1981)

l(3)86Fd

(Gausz et al., 1981)

l(3)86Fe

(Gausz et al., 1981)

l(3)86Ff

(Gausz et al., 1981)

l(3)86Fg

(Gausz et al., 1981)

l(3)87Aa

(Gausz et al., 1981)

l(3)87Ab

(Gausz et al., 1981)

l(3)87Ad

(Gausz et al., 1981)

l(3)87Ae

(Gausz et al., 1981)

l(3)87Ba

(Gausz et al., 1981)

l(3)87Bb

(Gausz et al., 1981)

l(3)87Bc

(Gausz et al., 1981)

l(3)87Be

(Gausz et al., 1981)

l(3)87Bf

(Gausz et al., 1981)

l(3)87Bh

(Gausz et al., 1981)

l(3)87Bi

(Gausz et al., 1981)

l(3)87Bj

(Gausz et al., 1981)

l(3)87Eg

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

l(3)01949

(Spradling et al., 1999, BDGP Project Members, 1994-1999)

l(3)02946

(BDGP Project Members, 1994-1999)

l(3)04449

(BDGP Project Members, 1994-1999)

l(3)j2C3

(BDGP Project Members, 1994-1999)

l(3)neo40

(BDGP Project Members, 1994-1999)

l(3)S059706

(Szeged Stock Center, 1998-)

Mow

(Bhadra and Birchler, 1996)

Pp1-87B

(Spradling et al., 1999, Gausz et al., 1981)

skd

(Lindsley and Zimm, 1992)

sqd

(BDGP Project Members, 1994-1999)

svp

(Spradling et al., 1999, BDGP Project Members, 1994-1999, Gausz et al., 1981)

Molecular Data

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location (137)

Related Comments

Phenotypic Data

In combination with other aberrations

Does not suppress variegation of the w gene seen in In(1)w^m4 animals.

(Bushey and Locke, 2004)

NOT in combination with other aberrations

When P{P-Sal}Pak3^P-Sal is present, the w gene of the P{lacW}Dplac insertion variegates, resulting (in a w^- background) in an eye that is mostly white with a few patches of red ommatidia. This P-element-dependent silencing of P{lacW}Dplac is dominantly suppressed by Df(3R)ry615.

(Bushey and Locke, 2004)

The Df(3R)ry615 chromosome does not act as a dominant suppressor of telomeric silencing (assayed using the effect of the chromosome on the eye colour phenotype of flies carrying "P{w^var}KR3-2", a stable "brown-red" variant of the P{3'WP-2,w^var}2Lt insertion).

(Mason et al., 2004)

Heterozygosity for Df(3R)ry615 results in 0.9% X chromosome nondisjunction and 0.6% fourth chromosome nondisjunction in In(1)FM7/X ; sv^spa-pol females.

(Harris et al., 2003)

Homozygous embryos show a "blimp" phenotype (when the embryos are mechanically devitellinised the resulting cuticle preparations stretch to a greater extent than wild-type cuticles).

(Ostrowski et al., 2002)

Heterozygotes show a quantitative effect on wing shape in intervein region C compared to wild type.

(Palsson and Gibson, 2000)

Does not cause unconditional lethality in hybrid females when heterozygous with D.simulans chromosome.

(Coyne et al., 1998)

No second site non-complementing phenotype with zip^Ebr and zip^mhc-c6.1.

(Halsell and Kiehart, 1998)

Shows no maternal enhancement of dpp^hr4.

(Nicholls and Gelbart, 1998)

Dominantly causes tergite defects in less than 50% of run³ heterozygotes.

(Duffy et al., 1996)

Deficient embryos show an uninterpretable mutant midgut phenotype.

(Bilder and Scott, 1995)

Mutation does not affect the level of w expression in ph-p^lac+3 flies.

(Fauvarque et al., 1995)

Homozygous embryos are very abnormal compared to wild-type.

(Harbecke and Lengyel, 1995)

Heterozygosity for this deletion has no effect on the mutant ovarian phenotype of ovo^D2.

(Pauli et al., 1995)

'Sloppy' ventral cord.

(Smith et al., 1993)

Stocks (2)

Bloomington

3007

Df(3R)ry615/TM3, Sb¹ Ser¹

Kyoto

107523

Df(3R)ry615/TM3, Sb¹ Ser¹

Notes on Origin

Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Synonyms and Secondary IDs (6)

Reported As

Symbol Synonym

BL3007

(Wayne and McIntyre, 2002)

Df(3R) ry615

(Fiehler and Wolff, 2008)

Df(3R)ry615

(Fernandes and Rao, 2011, Ghabrial et al., 2011, Cook et al., 2010.2.12, Hoang et al., 2010, Casso et al., 2008, Wang et al., 2008)

Df(3R)ry⁶¹⁵

(Wheeler et al., 2002, Ejima et al., 2001, Bhadra and Birchler, 1996, Fauvarque et al., 1995, Fyrberg et al., 1994, Gausz et al., 1981, Hall and Kankel, 1976)

ry615

(Marcillac et al., 2005, Hirose et al., 2001, Yamaguchi et al., 2001, Yamaguchi et al., 1999)

Name Synonyms

Deficiency (3R) rosy

Secondary FlyBase IDs

References (58)

Report Sections

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