A Database of Drosophila Genes & Genomes

FB2008_06, released July 3, 2008
 

Aberration Dmel\In(2LR)Scorv9

General Information
SymbolDmel\In(2LR)Scorv9SpeciesD. melanogaster
NameFlyBase IDFBab0004828
Feature typechromosomal_inversionCreated / Updated2006-08-22/2006-08-22
Formalized genetic data noc << bk1 << sna << CycE << bk2
Sequence coordinates
Deleted segment
Duplicated segment
Computed Breakpoints include 35D1-35D2;41
Breakpoints Inherited  
hide Nature of the Aberration
Cytological Order
Progenitor
Tp(2;2)Sco
(Ashburner et al., 1980, Ashburner et al., 1983, Ashburner and Harrington, 1984, Roote et al., 1996)
Mutagen
X ray
(Ashburner et al., 1980)
Class of aberration (relative to progenitor)
chromosomal_inversion
(Gubb et al., 1990, Ashburner et al., 1983, Ashburner and Harrington, 1984, Roote et al., 1996, Craymer, 1981, Ashburner et al., 1980)
Breakpoints
35B;41
(Ashburner et al., 1980, Craymer, 1981)
35D1-35D2;41
(Roote et al., 1996)
Causes alleles
nocSco-rv9
(Ashburner et al., 1999.10.12, Ashburner et al., 1980, Ashburner et al., 1983, Ashburner and Harrington, 1984)
Carries alleles
Transposon Insertions
Genetic mapping information
Comments
Left break mapped to the DNA (McGill, Chia, Karp and Ashburner, 1988, Genetics 119: 647-61).
 
Breakpoint(s) molecularly mapped
(Chia et al., 1985)
hide Comments on Cytology
Limits of break 1 from polytene analysis (FBrf0091422) Limits of break 2 from polytene analysis (FBrf0034393)
 
hide Molecularly Mapped Breakpoints
 
hide Sequence Crossreferences
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
hide Gene Deletion & Duplication Data
hide Genes Deleted / Disrupted
Complementation Data
Partially deleted / disrupted
noc
(Roote et al., 1996)
Molecular Data
hide Genes NOT Deleted / Disrupted
Complementation Data
Molecular Data
hide Genes Duplicated
Complementation Data
Molecular Data
hide Genes NOT Duplicated
Complementation Data
Molecular Data
hide Related Comments
Unusual noc complementation data due to function of the two transcripts, nocA and nocB.
(Roote et al., 1996)
hide Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations
Almost lethal when homozygous, most dying as pharate adults; escapers Sco.
 
Chromosome acts as a weak trans-suppressor of a physical interaction between tandemly duplicated copies of w+, an interaction that is required for the suppression of genes by z1.
(Gubb et al., 1990)
Lethal when trans-heterozygous with nocSco.
(McGill et al., 1988)
Most individuals die as pharate adults, the few adult escapers have a nocSco bristle phenotype.
(Ashburner et al., 1983, Ashburner and Harrington, 1984)
hide Position Effect Variegation Data
  
hide Stocks ( 1 )
Kyoto
101390
CyO, Cy1 dplv1 pr1 cn2 / In(2LR)Scorv9
hide Notes on Origin
Discoverer
Revertant
 
hide Balancer / Genotype Variants of the Aberration
    hide Separable Components
    hide Other Comments
    hide Synonyms & Secondary IDs ( 5 )
    Reported As
    Symbol Synonym
    In(2LR)ScoR+9
    (Ashburner et al., 1980, Craymer, 1981, Gubb et al., 1988)
    In(2LR)Scorv9
     
    In(2LR)ScoR+9
    (Ashburner et al., 1990, Gubb et al., 1990, McGill et al., 1988, )
    Sco+R9
     
    ScoR+9
    (Ashburner and Harrington, 1984, Ashburner et al., 1983)
    Name Synonym
    Secondary FlyBase IDs
      hide References ( 13 )
      Research paper
      Roote et al., 1996, D. I. S. 77: 55--65
      Aberrations in the l(2)34Fc - l(2)35Bb region of chromosome arm 2L. [FBrf0091422]
      Ashburner et al., 1990, Genetics 126: 679--694
      The genetics of a small autosomal region of Drosophila melanogaster containing the structural gene for alcohol dehydrogenase. [FBrf0051973]
      Gubb et al., 1990, Genetics 126: 167--176
      A novel transvection phenomenon affecting the white gene of Drosophila melanogaster. [FBrf0051930]
      Gubb et al., 1988, Genetics 119: 377--390
      A selective screen to recover chromosomal deletions and duplications in Drosophila melanogaster. [FBrf0048206]
      McGill et al., 1988, Genetics 119: 647--661
      The molecular analysis of an antimorphic mutation of Drosophila melanogaster, Scutoid. [FBrf0048235]
      Chia et al., 1985, J. molec. Biol. 186(2): 689--706
      Molecular analysis of the Adh region of the genome of Drosophila melanogaster. [FBrf0043115]
      Ashburner and Harrington, 1984, Chromosoma 89: 329--337
      A cytological analysis of the Scutoid mutation of Drosophila melanogaster, and its induced revertants. [FBrf0040522]
      Ashburner et al., 1983, Genetics 104: 405--431
      The genetics of a small autosomal region of Drosophila melanogaster containing the structural gene for alcohol dehydrogenase. [FBrf0039455]
      Craymer, 1981, Genetics 99(1): 75--97
      Techniques for manipulating chromosomal rearrangements and their application to Drosophila melanogaster. [FBrf0036539]
      Ashburner et al., 1980, D. I. S. 55: 193--195
      Report of New Mutants - Drosophila melanogaster. [FBrf0034393]
      Personal communication to FlyBase
      Ashburner et al., 1999.10.12, Adh.
      Adh. [FBrf0112153]
      FlyBase analysis
      FlyBase, 2007, En masse symbol-based assigment of Aberration Class with respect to wild type.
      En masse symbol-based assigment of Aberration Class with respect to wild type. [FBrf0191808]
      Book
      Lindsley and Zimm, 1992, The Genome of Drosophila melanogaster.
      The Genome of Drosophila melanogaster. [FBrf0066905]