A Database of Drosophila Genes & Genomes

FB2008_06, released July 3, 2008
 

Aberration Dmel\Df(2R)nap1

General Information
SymbolDmel\Df(2R)nap1SpeciesD. melanogaster
NameFlyBase IDFBab0010165
Feature typechromosomal_deletionCreated / Updated2006-08-22/2006-08-22
Formalized genetic data bk1 << EcR << l(2)42Bd << bk2
Sequence coordinates
Deleted segment41D2--42B3
Duplicated segment
Computed Breakpoints include 41D2-41E1;42B1-42B3
Breakpoints Inherited  
hide Nature of the Aberration
Cytological Order
Progenitor
Mutagen
Class of aberration (relative to progenitor)
chromosomal_deletion
(Gellon et al., 1997, Kreber, 1994.3.17)
Breakpoints
41D2-41E1;42B1-42B3
(Kreber, 1994.3.17, Gellon et al., 1997)
Causes alleles
Carries alleles
Transposon Insertions
Genetic mapping information
Comments
hide Comments on Cytology
All limits from polytene analysis (FBrf0075275)
 
hide Molecularly Mapped Breakpoints
 
hide Sequence Crossreferences
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
hide Gene Deletion & Duplication Data
hide Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
esg
(BDGP Project Members, 1994-1999)
Src42A
(BDGP Project Members, 1994-1999, Spradling et al., 1999)
l(2)k14710
(BDGP Project Members, 1994-1999, Spradling et al., 1999)
EcR
(BDGP Project Members, 1994-1999, Bender, 1996, Gellon et al., 1997, Spradling et al., 1999)
BubR1
(BDGP Project Members, 1994-1999, Basu et al., 1999, Spradling et al., 1999, Myster et al., 2004)
vlc
(BDGP Project Members, 1994-1999, Spradling et al., 1999, Myster et al., 2004)
l(2)09851
(BDGP Project Members, 1994-1999, Spradling et al., 1999)
ap
(Pueyo et al., 2000, Coelho et al., 2005)
l(2)NC136
(Myster et al., 2004)
Nipped-A
(Myster et al., 2004)
l(2)k09848
(BDGP Project Members, 1994-1999, Spradling et al., 1999)
l(2)c00221
(Thibault et al., 2004)
l(2)NC45
(Myster et al., 2004)
l(2)NC114
(Myster et al., 2004)
l(2)NC192
(Myster et al., 2004)
l(2)NC12
(Myster et al., 2004)
l(2)42Bc
(Bender, 1996)
l(2)NC148
(Myster et al., 2004)
l(2)NC139
(Myster et al., 2004)
l(2)NC14
(Myster et al., 2004)
l(2)42Bb
(Bender, 1996)
l(2)NC47
(Myster et al., 2004)
l(2)NC130
(Myster et al., 2004)
S(CycEJP)2.4
(Brumby et al., 2004)
l(2)42Bd
(Bender, 1996)
l(2)NC85
(Myster et al., 2004)
Molecular Data
hide Genes NOT Deleted / Disrupted
Complementation Data
Eb1
(Brumby et al., 2004)
Tdc2
(Cole et al., 2005)
Tdc1
(Cole et al., 2005)
Nipped-B
(Myster et al., 2004)
l(2)k14805
(BDGP Project Members, 1994-1999, Spradling et al., 1999)
rl
(Myster et al., 2004)
CG17486
(Myster et al., 2004)
p120ctn
(Myster et al., 2004)
l(2)309
(Myster et al., 2004)
RpL38
(Myster et al., 2004)
Stlk
(Myster et al., 2004)
l(2)05315
(BDGP Project Members, 1994-1999)
l(2)NC30
(Myster et al., 2004)
l(2)IR3
(Myster et al., 2004)
l(2)NC70
(Myster et al., 2004)
l(2)NC83
(Myster et al., 2004)
l(2)NC38
(Myster et al., 2004)
l(2)NC110
(Myster et al., 2004)
l(2)NC19
(Myster et al., 2004)
l(2)NC28
(Myster et al., 2004)
l(2)NC37
(Myster et al., 2004)
l(2)IR23
(Myster et al., 2004)
l(2)NC204
(Myster et al., 2004)
l(2)NC133
(Myster et al., 2004)
jing
(BDGP Project Members, 1994-1999, Spradling et al., 1999)
Molecular Data
hide Genes Duplicated
Complementation Data
Molecular Data
hide Genes NOT Duplicated
Complementation Data
Molecular Data
hide Related Comments
hide Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations
Heterozygosity for Df(2R)nap1 results in 4.0% X chromosome nondisjunction and 1.6% fourth chromosome nondisjunction in In(1)FM7/X ; svspa-pol females.
(Harris et al., 2003)
Intermediate second site non-complementing phenotype with zipEbr and zipmhc-c6.1: malformed phenotype penetrance 25-75%.
(Halsell and Kiehart, 1998)
The Df(2R)nap1 chromosome does not act as a dominant suppressor of telomeric silencing (assayed using the effect of the chromosome on the eye colour phenotype of flies carrying "P{wvar}KR3-2", a stable "brown-red" variant of the P{3\'WP-2,wvar}2Lt insertion).
(Mason et al., 2004)
hide Position Effect Variegation Data
  
hide Stocks ( 3 )
Bloomington
1006
Df(2R)nap1/Dp(2;2)BG, In(2LR)Gla, wgGla-1
Kyoto
106164
Df(2R)nap1/In(2LR)Gla, Dp(2;2)BG, wgGla-1
101444
Df(2R)nap1 / In(2LR)Gla, Dp(2;2)BG, wgGla-1
hide Notes on Origin
Discoverer
hide Balancer / Genotype Variants of the Aberration
    hide Separable Components
      hide Other Comments
      hide Synonyms & Secondary IDs ( 3 )
      Reported As
      Symbol Synonym
      Df(2)nap1
      (Pueyo and Couso, 2004)
      Df(2R)nap1
      (Huang et al., 2004, Collett, 2008.2.16)
      Df(2R)nap1
      (Yedvobnick et al., 2001, Pueyo et al., 2000, Lu and Li, 1999, Kreber, 1994.3.17)
      Name Synonym
      Secondary FlyBase IDs
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