FlyBase Aberration Report: Dmel\Df(3L)6B-29+Df(3R)6B-29

General Information

Symbol

Df(3L)6B-29+Df(3R)6B-29

Species

D. melanogaster

Name

FlyBase ID

FBab0022328

Feature type

chromosomal_deletion

Computed Breakpoints include

Features within h53--h58

Genomic Maps

JBrowse

Sequence coordinates

3L:24,977,118..25,115,180 (Df(3L)6B-29+Df(3R)6B-29:bk1)

(Cook, 2019.5.6)

3L:27,967,244..28,112,227 (Df(3L)6B-29+Df(3R)6B-29:bk2)

(Cook, 2019.5.6)

Member of large scale dataset(s)

Nature of Aberration

Cytological Order

Progenitor

Mutagen

Class of aberration (relative to wild type)

chromosomal_deletion

(FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Schulze et al., 2001)

Breakpoints

[];[]

(Schulze et al., 2001)

Causes alleles

Carries alleles

Transposon Insertions

Formalized genetic data

Genetic mapping information

Comments

The 3L:24977118..25115180 release 6 coordinates of the left breakpoint of the Df(3L)6B-29 component of Df(3L)6B-29+Df(3R)6B-29 are estimates. The left extent corresponds to the right end of ND-AGGG, which Fitzpatrick et al. (FBrf0187676) say is not deleted. The right extent corresponds to the right end of Set1, which Fitzpatrick et al. (FBrf0187676) say is deleted.

(Cook, 2019.5.6)

The 3L:27967244..28112227 release 6 coordinates of the right breakpoint of the Df(3L)6B-29 component of Df(3L)6B-29+Df(3R)6B-29 are estimates. The left extent corresponds to the left end of CG17514, which Fitzpatrick et al. (FBrf0187676) say is deleted. Because the Df(3L)6B-29 component of Df(3L)6B-29+Df(3R)6B-29 extends into centric heterochromatin according to Fitzpatrick et al. (FBrf0187676), the right extent is shown arbitrarily as the right end of chromosome 4 genome assembly.

(Cook, 2019.5.6)

Comments on Cytology

Portions of 3L and 3R heterochromatic regions are missing in Df(3L)6B-29+Df(3R)6B-29. The h47-h48 region is present and is adjoined by a region that may correspond to h49 together with a small portion of h50. Region h52 is clearly missing, as well as the entire 3R heterochromatin including most of h58. A portion of h53 that contains the centromere is present.

(Koryakov et al., 2002)

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

(Honda, 2019.6.5)

(Honda, 2019.6.5)

(Honda, 2019.6.5)

(Honda, 2019.6.5)

(Syrzycka et al., 2019, Schulze et al., 2001, Sinclair et al., 2000)

Gfat1

(Honda, 2019.6.5)

l(3)80Fd

(Schulze et al., 2001, Sinclair et al., 2000)

l(3)80Fe

(Sinclair et al., 2000)

l(3)80Fg

(Syrzycka et al., 2019, Schulze et al., 2001, Sinclair et al., 2000)

l(3)80Fj

(Syrzycka et al., 2019, Schulze et al., 2001, Sinclair et al., 2000)

l(3)81Fa

Mic10b

(Honda, 2019.6.5)

nvd

(Sinclair et al., 2000)

Parp1

(Honda, 2019.6.5)

RpL15

(Syrzycka et al., 2019, Schulze et al., 2001, Sinclair et al., 2000)

Set1

(Syrzycka et al., 2019)

spok

(Honda, 2019.6.5)

Tim17b

(Honda, 2019.6.5)

vtd

(Schulze et al., 2001, Sinclair et al., 2000)

Z297

(Syrzycka et al., 2019)

Z763

(Syrzycka et al., 2019)

Z1029

(Syrzycka et al., 2019)

Z1935

(Syrzycka et al., 2019)

Z4476

(Syrzycka et al., 2019)

Z4510

(Syrzycka et al., 2019)

Z5460

(Syrzycka et al., 2019)

Partially deleted / disrupted

Molecular Data

Completely deleted

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

abs

(Honda, 2019.6.5)

aux

(Honda, 2019.6.5)

mRpS5

(Schulze et al., 2001)

Myo81F

(Honda, 2019.6.5)

nvd

(Schulze et al., 2001)

Pzl

(Honda, 2019.6.5)

scro

(Schulze et al., 2001)

Molecular Data

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location (30)

Related Comments

Phenotypic Data

In combination with other aberrations

Inferred to overlap with: Df(3L)14A-1343.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)10A-301.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)1A-83.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)10B-359.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)1B-28.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)3B-296.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)7B-75.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)11B-1005.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)2A-176.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)18B-1804.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)7B-29.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)5B-461.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)18A-1677.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)7B-82.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)11A-428.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)e331.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)2A-54.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)3A-243.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)13B-672.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)14A-563.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)5A-406.

(Syrzycka et al., 2019)

NOT in combination with other aberrations

Stocks (2)

Bloomington

2596

Df(3L)6B-29+Df(3R)6B-29, kni^ri-1 p^p/TM3, Ser¹

Kyoto

107420

Df(3L)6B-29+Df(3R)6B-29, kni^ri-1 p^p/TM3, Sb¹ Ser¹

Notes on Origin

Discoverer

D. Holm.

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Synonyms and Secondary IDs (5)

Reported As

Symbol Synonym

6B-29

(Honda, 2019.6.5, Syrzycka et al., 2019)

Df 6B-29

(Sinclair et al., 2000)

Df(3L)6B-29+Df(3R)6B-29

(Li et al., 2020, Sawyer et al., 2020, Cook, 2019.5.6, Marcogliese et al., 2017, Koryakov et al., 2003)

Df(3LR)6B-29

(Syrzycka et al., 2019)

Df(6B-29)

(Schulze et al., 2001)

Name Synonyms

Secondary FlyBase IDs

References (12)

Report Sections

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