FB2025_01 , released February 20, 2025
Aberration: Dmel\Df(3L)BSC23
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General Information
Symbol
Df(3L)BSC23
Species
D. melanogaster
Name
FlyBase ID
FBab0029837
Feature type
chromosomal_deletion
Computed Breakpoints include
Features within 62E8--63B6
Genomic Maps
Sequence coordinates
3L:2,589,553..2,591,159 (Df(3L)BSC23:bk1)
(Cook, 2016.2.8)
3L:3,193,242..3,193,242 (Df(3L)BSC23:bk2)
(Cook, 2016.2.8)
Member of large scale dataset(s)
Dfs_BSC_set1

A set of ~50 targeted deficiencies created by exploiting hybrid element insertion (HEI) and resolution; designed to fill gaps in deletion coverage.

(Parks et al., 2004)
Nature of Aberration
Cytological Order
Progenitor
P{lacW}Hsp83j5C2
(Parks et al., 2004, Deal et al., 2002.11.12)
P{lacW}dosP115
(Parks et al., 2004, Deal et al., 2002.11.12)
Mutagen
Delta2-3 transposase
(Deal et al., 2002.11.12)
recombination
(Deal et al., 2002.11.12)
Class of aberration (relative to wild type)
chromosomal_deletion
(FlyBase, 2007)
Class of aberration (relative to progenitor)
chromosomal_deletion
(Parks et al., 2004, Deal et al., 2002.11.12)
Breakpoints

62E8;63B5-63B6

(Parks et al., 2004, Deal et al., 2002.11.12)
Causes alleles
Carries alleles
e1
(Deal et al., 2002.11.12)
rhove-1
(Deal et al., 2002.11.12)
Transposon Insertions
Formalized genetic data
Genetic mapping information
Comments

The 3L:2589553..2591159 release 6 coordinates of the left breakpoint are estimates. They correspond to the insertion site of P{lacW}dosP115. As FBrf0175003 explains, deletions generated by P transposase in the presence of trans-heterozygous P elements are expected to extend from the end of one P insertion to the vicinity of the other P insertion. Heterozygotes for Df(3L)BSC23 do not show Minute phenotypes, so the haploinsufficient RpL8 gene lies to the left of this breakpoint.

(Cook, 2016.2.8)

The 3L:3193242 release 6 coordinate of the right breakpoint is an estimate. It corresponds to the insertion site of P{lacW}Hsp83j5C2. As FBrf0175003 explains, deletions generated by P transposase in the presence of trans-heterozygous P elements are expected to extend from the end of one P insertion to the vicinity of the other P insertion.

(Cook, 2016.2.8)

This deletion removes a single ribosomal protein-coding gene (though other genes are also removed).

(Marygold et al., 2007)
Comments on Cytology
Sequence Crossreferences
DDBJ / EMBL / GenBank
DNA sequence
Protein sequence
Gene Deletion and Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
aly
(Deal et al., 2002.11.12)
rasp
(Deal et al., 2002.11.12)
Partially deleted / disrupted
Molecular Data
Completely deleted
mRpS35
(Marygold et al., 2007)
Partially deleted
Genes NOT Deleted / Disrupted
Complementation Data
 
l(3)psg2
(Wang et al., 2008)
Molecular Data
 
Genes Duplicated
Complementation Data
Completely duplicated
Partially duplicated
Molecular Data
Completely duplicated
Partially duplicated
Genes NOT Duplicated
Complementation Data
 
Molecular Data
 
Affected Genes Inferred by Location (86)
Phenotypic Data
In combination with other aberrations

Inferred to overlap with: Df(3L)BSC412.

(Christensen et al., 2008.4.15)

Inferred to overlap with: Df(3L)BSC428.

(Christensen et al., 2008.4.15)

Lethal in combination with Df(3L)BSC119. Inferred to overlap with: Df(3L)BSC119.

(Andrade and Cook, 2005.7.22)
NOT in combination with other aberrations

Flies heterozygous for the deletion do not show a Minute bristle phenotype.

(Marygold et al., 2007)
Stocks (2)
Notes on Origin
Discoverer
 
Balancer / Genotype Variants of the Aberration
 
Separable Components
 
Other Comments
 

The deficiency chromosome retains the miniwhite marker from P{lacW}dosP115 and/or P{lacW}Hsp83j5C2.

(Mason, 2004.11.26)
Synonyms and Secondary IDs (1)
References (22)