FlyBase Aberration Report: Dmel\Df(2R)BSC29

General Information

Symbol

Df(2R)BSC29

Species

D. melanogaster

Name

FlyBase ID

FBab0029979

Feature type

chromosomal_deletion

Computed Breakpoints include

Features within 45D3--45F6

Sequence coordinates

Member of large scale dataset(s)

Dfs_BSC_set1

A set of ~50 targeted deficiencies created by exploiting hybrid element insertion (HEI) and resolution; designed to fill gaps in deletion coverage.

(Parks et al., 2004)

Nature of Aberration

Cytological Order

Progenitor

P{lacW}l(2)k09501^k09501

(Parks et al., 2004, Deal-Herr and Cook, 2003.4.2)

P{PZ}l(2)03659⁰³⁶⁵⁹

(Parks et al., 2004, Deal-Herr and Cook, 2003.4.2)

Mutagen

Delta2-3 transposase

(Deal-Herr and Cook, 2003.4.2)

recombination

(Deal-Herr and Cook, 2003.4.2)

Class of aberration (relative to wild type)

chromosomal_deletion

(FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

(Parks et al., 2004, Deal-Herr and Cook, 2003.4.2)

Breakpoints

45D3-45D4;45F2-45F6

(Parks et al., 2004, Deal-Herr and Cook, 2003.4.2)

Causes alleles

Carries alleles

bw¹

(Deal-Herr and Cook, 2003.4.2)

cn¹

(Deal-Herr and Cook, 2003.4.2)

Transposon Insertions

Formalized genetic data

Genetic mapping information

Comments

Comments on Cytology

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

su(rdgA)40

(Georgiev et al., 2012)

Partially deleted / disrupted

Molecular Data

Completely deleted

ced-6

(Georgiev et al., 2012)

Pdk

(Georgiev et al., 2012)

wun2

(Georgiev et al., 2012)

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

Pkn

(Ferreira et al., 2014)

Molecular Data

CG13739

(Georgiev et al., 2012)

CG13954

(Georgiev et al., 2012)

Myd88

(Georgiev et al., 2012)

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location (0)

If no genes are listed here, it may be because the affected region is very large. The JBrowse insert above may show an error for the same reason, and other FlyBase tools such as CytoSearch may also fail for large regions. You can contact FlyBase for more help.
In these cases, there will be no "Export to Hitlist" button to the left.

Related Comments

Phenotypic Data

In combination with other aberrations

Fails to complement Df(2R)BSC279.

(Christensen and Cook, 2007.5.8)

Inferred to overlap with: Df(2R)BSC279.

(Christensen and Cook, 2007.5.8)

Fails to complement Df(2R)BSC280.

(Christensen and Cook, 2007.5.8)

Inferred to overlap with: Df(2R)BSC280.

(Christensen and Cook, 2007.5.8)

NOT in combination with other aberrations

The Df(2R)BSC29 chromosome does not act as a dominant suppressor of telomeric silencing (assayed using the effect of the chromosome on the eye colour phenotype of flies carrying "P{w^var}KR3-2", a stable "brown-red" variant of the P{3'WP-2,w^var}2Lt insertion).

(Mason et al., 2004)

Stocks (2)

Bloomington

6917

Df(2R)BSC29, cn¹ bw¹ speck¹/CyO

Kyoto

130334

Df(2R)BSC29, cn¹ bw¹ speck¹/CyO

Notes on Origin

Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

The miniwhite marker from P{lacW}l(2)k09501^k09501 was deleted or disrupted.

(Mason, 2004.11.26)

Synonyms and Secondary IDs (4)

Reported As

Symbol Synonym

Df(2)BSC29

(Owald et al., 2012)

Df(2R)BSC29

(Driller et al., 2019, Siebert et al., 2015, Clough et al., 2014, Ferreira et al., 2014, Galindo et al., 2014, Peled et al., 2014, Matkovic et al., 2013, Georgiev et al., 2012, Fernandes and Rao, 2011, Hallermann et al., 2010, Fouquet et al., 2009, O'Farrell et al., 2008, Christensen and Cook, 2007.5.8, Christensen and Cook, 2007.5.8, Kittel et al., 2006, Kittel et al., 2006)

DfBSC29

(Owald et al., 2010)

df(2R)BSC29

(Gao et al., 2019, Schmid et al., 2008)

Name Synonyms

Secondary FlyBase IDs

References (28)

Report Sections

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