Aberration Dmel\Df(1)ED6712

General Information
Symbol	Dmel\Df(1)ED6712	Species	D. melanogaster
Name		FlyBase ID	FBab0030339
Feature type	chromosomal_deletion

Computed Breakpoints include	[3D3-3D3];[3F1-3F1];
Deleted segment	3D3--3F1
Map ( GBrowse )	Untitled Document
Sequence coordinates	X:3,326,568..3,326,568 (Df(1)ED6712:bk1) (DrosDel Project, 2007.6.25) X:3,683,648..3,683,648 (Df(1)ED6712:bk2) (DrosDel Project, 2007.6.25)
Member of large scale dataset(s)	Dfs_DrosDel_set1 A set of isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Initial core set of 209 isogenic deletions provides ~60% euchromatic genome coverage. (Ryder et al., 2007)
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Nature of the Aberration
Cytological Order
Progenitor	P{RS3r}CB-5661-3 (Ryder and Roote, 2005.11.4) P{RS5r}5-HA-1923 (Ryder and Roote, 2005.11.4)
Mutagen	FLPase (Ryder and Roote, 2005.11.4)
Class of aberration (relative to progenitor)	chromosomal_deletion (Ryder, 2003.6.17, Ryder and Roote, 2005.11.4)
Breakpoints	3D3;3F1 (FlyBase Curators, 2008)
Causes alleles
Carries alleles
Transposon Insertions	P{3'.RS5+3.3'}ED6712 (Ryder and Roote, 2005.11.4)
Formalized genetic data
Genetic mapping information
Comments
Comments on Cytology
	Confirmed by 3-step PCR confirmation as shown in http://www.drosdel.org.uk/del_confirm.php (Ryder and Roote, 2005.11.4) Limits of break 1 computationally determined from location of progenitor P insertion on genome sequence between P{EP}dnc^EP973 and P{EP}Parg^EP351 Limits of break 2 computationally determined from location of progenitor P insertion on genome sequence between P{EP}EP1200^EP1200&P{EP}EP1343 and P{EP}CG2930^EP1352
Sequence Crossreferences
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name
Gene Deletion & Duplication Data
Genes Deleted / Disrupted
Complementation Data
Molecular Data
Genes NOT Deleted / Disrupted
Complementation Data
	ec (Montrasio et al., 2007)
Molecular Data
Genes Duplicated
Complementation Data
Molecular Data
Genes NOT Duplicated
Complementation Data
Molecular Data
Related Comments

Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations
Stocks ( 2 )
Bloomington	9169 Df(1)ED6712, w¹¹¹⁸ P{3'.RS5+3.3'}ED6712/FM7h
Kyoto	150172 w¹¹¹⁸ Df(1)ED6712 / FM7h
Notes on Origin
Discoverer
	Potential deficiency; could be generated as the recombinant product between the reduced derivatives of P{RS5}5-HA-1923 and P{RS3}CB-5661-3. (Ryder, 2003.6.17)
Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	Df(1)ED6712 (FlyBase Curators, 2008, Montrasio et al., 2007)
Name Synonym
Secondary FlyBase IDs

References ( 8 )
Research paper	Montrasio et al., 2007, Dev. Dyn. 236(10): 2936--2942 A new allele uncovers the role of echinus in the control of ommatidial rotation in the Drosophila eye. [FBrf0202297] Ryder et al., 2007, Genetics 177(1): 615--629 The DrosDel deletion collection: a Drosophila genomewide chromosomal deficiency resource. [FBrf0202170]
Personal communication to FlyBase	DrosDel Project, 2007.6.25, DrosDel deletion data mapped to Release 5.1 (updated 2007-06-25). DrosDel deletion data mapped to Release 5.1 (updated 2007-06-25). [FBrf0205060] Ryder and Roote, 2005.11.4, Update from DrosDel Database - Release 4 mappings - November 2005. Update from DrosDel Database - Release 4 mappings - November 2005. [FBrf0188738] Ryder, 2003.6.17, Drosdel deletions. Drosdel deletions. [FBrf0161091]
FlyBase analysis	Millburn et al., 2012.8.1, Lines in aberration datasets (files on ftp site). Lines in aberration datasets (files on ftp site). [FBrf0219195] FlyBase Curators, 2008, Release 5 estimated cytology of aberrations with sequence-defined breakpoints. Release 5 estimated cytology of aberrations with sequence-defined breakpoints. [FBrf0206255] FlyBase, 2007, En masse symbol-based assigment of Aberration Class with respect to wild type. En masse symbol-based assigment of Aberration Class with respect to wild type. [FBrf0191808]