FB2020_06, released Dec 22, 2020

Aberration: Dmel\Df(1)ED6712

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General Information
Symbol
Df(1)ED6712
Species
D. melanogaster
Name
FlyBase ID
FBab0030339
Feature type
chromosomal_deletion
Computed Breakpoints include

[3D3-3D3];[3F1-3F1];

Features within 3D3--3F1
Genomic Maps
Sequence coordinates
X:3,432,535..3,432,535 (Df(1)ED6712:bk1)
(DrosDel Project, 2007.6.25)
X:3,789,615..3,789,615 (Df(1)ED6712:bk2)
(DrosDel Project, 2007.6.25)
Member of large scale dataset(s)
Dfs_DrosDel_set1

A set of isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Initial core set of 209 isogenic deletions provides ~60% euchromatic genome coverage.

(Ryder et al., 2007)
Nature of Aberration
Cytological Order
Progenitor
P{RS3r}CB-5661-3
(Ryder and Roote, 2005.11.4)
P{RS5r}5-HA-1923
(Ryder and Roote, 2005.11.4)
Mutagen
FLPase
(Ryder and Roote, 2005.11.4)
Class of aberration (relative to wild type)
chromosomal_deletion
(FlyBase, 2007)
Class of aberration (relative to progenitor)
chromosomal_deletion
(Ryder and Roote, 2005.11.4, Ryder, 2003.6.17)
Breakpoints

3D3;3F1

(FlyBase Curators, 2008)
Causes alleles
Carries alleles
Transposon Insertions
P{3'.RS5+3.3'}ED6712
(Ryder and Roote, 2005.11.4)
Formalized genetic data
Genetic mapping information
Comments
Comments on Cytology

Confirmed by 3-step PCR confirmation as shown in http://www.drosdel.org.uk/del_confirm.php

(Ryder and Roote, 2005.11.4)

Limits of break 1 computationally determined from location of progenitor P insertion on genome sequence between P{EP}dncEP973 and P{EP}PargEP351 Limits of break 2 computationally determined from location of progenitor P insertion on genome sequence between P{EP}EP1200EP1200&P{EP}EP1343 and P{EP}CG2930EP1352

Sequence Crossreferences
DDBJ / EMBL / GenBank
DNA sequence
Protein sequence
Gene Deletion and Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
Partially deleted / disrupted
Molecular Data
Completely deleted
Partially deleted
Genes NOT Deleted / Disrupted
Complementation Data
 
ec
(Montrasio et al., 2007)
Molecular Data
 
Genes Duplicated
Complementation Data
Completely duplicated
Partially duplicated
Molecular Data
Completely duplicated
Partially duplicated
Genes NOT Duplicated
Complementation Data
 
Molecular Data
 
Affected Genes Inferred by Location
Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations
Stocks (2)
Notes on Origin
Discoverer
 

Potential deficiency; could be generated as the recombinant product between the reduced derivatives of P{RS5}5-HA-1923 and P{RS3}CB-5661-3.

(Ryder, 2003.6.17)
Balancer / Genotype Variants of the Aberration
 
Separable Components
 
Other Comments
 
Synonyms and Secondary IDs (1)
Reported As
Symbol Synonym
Df(1)ED6712
(Li et al., 2020, Hope et al., 2019, Johns et al., 2018, Casso et al., 2011, FlyBase Curators, 2008, Montrasio et al., 2007)
Name Synonyms
Secondary FlyBase IDs
    References (11)