A Database of Drosophila Genes & Genomes

FB2008_06, released July 3, 2008
 

Aberration Dmel\Df(1)ED6957

General Information
SymbolDmel\Df(1)ED6957SpeciesD. melanogaster
NameFlyBase IDFBab0030570
Feature typechromosomal_deletionCreated / Updated2006-08-22/2006-08-22
Formalized genetic data
Sequence coordinatesX:8785828..9029070 (8B6;8C13)
Deleted segment8B6--8C13
Duplicated segment
Computed Breakpoints include 8B6;8C13
Breakpoints Inherited  
hide Nature of the Aberration
Cytological Order
Progenitor
P{RS3r}CB-0925-3
(Popkova, 2004.2.27)
P{RS5r}5-SZ-3689
(Popkova, 2004.2.27)
Mutagen
FLPase
(Popkova, 2004.2.27)
Class of aberration (relative to progenitor)
chromosomal_deletion
(Ryder, 2003.6.17, Popkova, 2004.2.27)
Breakpoints
Causes alleles
Carries alleles
Transposon Insertions
P{3'.RS5+3.3'}ED6957
(Popkova, 2004.2.27)
Genetic mapping information
Comments
hide Comments on Cytology
Limits of break 1 computationally determined from location of progenitor P insertion on genome sequence between P{EP}CG1632EP1583 and P{EP}MoeEP1652 Limits of break 2 computationally determined from location of progenitor P insertion on genome sequence between P{EP}CG10962EP1565&P{EP}EP1030 and P{EP}EP1450&P{EP}EP1356
 
Confirmed by 3-step PCR confirmation as shown in http://www.drosdel.org.uk/del_confirm.php
(Ryder and Roote, 2005.11.4)
hide Molecularly Mapped Breakpoints
 
hide Sequence Crossreferences
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
hide Gene Deletion & Duplication Data
hide Genes Deleted / Disrupted
Complementation Data
Molecular Data
hide Genes NOT Deleted / Disrupted
Complementation Data
mei-P26
(Glasscock et al., 2005)
gl-l
(Popkova, 2004.2.27)
Molecular Data
hide Genes Duplicated
Complementation Data
Molecular Data
hide Genes NOT Duplicated
Complementation Data
Molecular Data
hide Related Comments
hide Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations
hide Position Effect Variegation Data
  
hide Stocks ( 2 )
Szeged
-
Df(1)ED6957/FM7j-B1
Bloomington
8033
Df(1)ED6957, w1118 P{3\'.RS5+3.3\'}ED6957/FM7j, B1
hide Notes on Origin
Discoverer
Potential deficiency; could be generated as the recombinant product between the reduced derivatives of P{RS5}5-SZ-3689 and P{RS3}CB-0925-3.
(Ryder, 2003.6.17)
hide Balancer / Genotype Variants of the Aberration
    hide Separable Components
      hide Other Comments
      hide Synonyms & Secondary IDs ( 1 )
      Reported As
      Symbol Synonym
      Df(1)ED6957
      (Crest et al., 2007)
      Name Synonym
      Secondary FlyBase IDs
        hide References ( 6 )
        Research paper
        Crest et al., 2007, Genetics 175(2): 567--584
        Onset of the DNA replication checkpoint in the early Drosophila embryo. [FBrf0194644]
        Glasscock et al., 2005, Genetics 170(4): 1677--1689
        The mei-P26 Gene Encodes a RING Finger B-box Coiled-Coil-NHL Protein That Regulates Seizure Susceptibility in Drosophilia. [FBrf0187640]
        Personal communication to FlyBase
        Ryder and Roote, 2005.11.4, Update from DrosDel Database - Release 4 mappings - November 2005.
        Update from DrosDel Database - Release 4 mappings - November 2005. [FBrf0188738]
        Popkova, 2004.2.27, Helping FlyBase: ADRC-10004.
        Helping FlyBase: ADRC-10004. [FBrf0178804]
        Ryder, 2003.6.17, Drosdel deletions.
        Drosdel deletions. [FBrf0161091]
        FlyBase analysis
        FlyBase, 2007, En masse symbol-based assigment of Aberration Class with respect to wild type.
        En masse symbol-based assigment of Aberration Class with respect to wild type. [FBrf0191808]