Aberration Dmel\Df(3L)ED4799

General Information
Symbol	Dmel\Df(3L)ED4799	Species	D. melanogaster
Name		FlyBase ID	FBab0036040
Feature type	chromosomal_deletion

Computed Breakpoints include	[76A1-76A1];[76B3-76B3];
Deleted segment	76A1--76B3
Map ( GBrowse )	Untitled Document
Sequence coordinates	3L:19,163,806..19,163,806 (Df(3L)ED4799:bk1) (DrosDel Project, 2007.6.25) 3L:19,475,272..19,475,272 (Df(3L)ED4799:bk2) (DrosDel Project, 2007.6.25)
Member of large scale dataset(s)	Dfs_DrosDel_set1 A set of isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Initial core set of 209 isogenic deletions provides ~60% euchromatic genome coverage. (Ryder et al., 2007)
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Nature of the Aberration
Cytological Order
Progenitor	P{RS3r}CB-5135-3 (Ryder, 2003.6.17) P{RS5r}5-SZ-3487 (Ryder, 2003.6.17)
Mutagen	FLPase (Ryder, 2003.6.17)
Class of aberration (relative to progenitor)	chromosomal_deletion (Ryder, 2003.6.17)
Breakpoints	76A1;76B3 (FlyBase Curators, 2008)
Causes alleles
Carries alleles
Transposon Insertions	P{3'.RS5+3.3'}ED4799 (Ryder, 2003.6.17)
Formalized genetic data
Genetic mapping information
Comments
Comments on Cytology
	Confirmed by lack of complementation to a known lethal mutation predicted to fall between the progenitor insertions. (Ryder and Roote, 2005.11.4) Limits computationally determined from location of progenitor P insertion on genome sequence between P{EP}MESR6^EP3142 and P{lacW}l(3)L3809^L3809
Sequence Crossreferences
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name
Gene Deletion & Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted	pip (Cooper et al., 2010)
Molecular Data
Genes NOT Deleted / Disrupted
Complementation Data
	asf1 (Cooper et al., 2010) ash1 (Cooper et al., 2010) Deaf1 (Cooper et al., 2010) Gyc76C (Cooper et al., 2010) HLH106 (Cooper et al., 2010) jaft (Collins and Cohen, 2005) kto (Cooper et al., 2010) l(3)76BDd (Cooper et al., 2010) l(3)76BDg (Cooper et al., 2010) l(3)76BDh (Cooper et al., 2010) l(3)76BDj (Cooper et al., 2010) l(3)76BDm (Cooper et al., 2010) l(3)76BDr (Cooper et al., 2010) l(3)76BDt (Cooper et al., 2010) Mi-2 (Cooper et al., 2010) Papss (Cooper et al., 2010) Rab8 (Cooper et al., 2010) serp (Cooper et al., 2010) Su(Tpl) (Cooper et al., 2010) Su(z)12 (Cooper et al., 2010) Taf6 (Cooper et al., 2010) trc (Cooper et al., 2010) trpml (Cooper et al., 2010) verm (Cooper et al., 2010)
Molecular Data
Genes Duplicated
Complementation Data
Molecular Data
Genes NOT Duplicated
Complementation Data
Molecular Data
Related Comments

Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations	The distal half of the salivary gland turns but the proximal half does not in embryos homozygous for Df(3L)ED4799 by stage 14. (Jattani et al., 2009)
Stocks ( 2 )
Bloomington	8085 w¹¹¹⁸; Df(3L)ED4799, P{3'.RS5+3.3'}ED4799/TM6C, cu¹ Sb¹
Kyoto	150441 w¹¹¹⁸; Df(3L)ED4799 / TM6C, Sb¹
Notes on Origin
Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	Df(3L)ED4799 (FlyBase Curators, 2008, Jattani et al., 2009, Cooper et al., 2010)
Name Synonym
Secondary FlyBase IDs

References ( 10 )
Research paper	Cooper et al., 2010, Genetics 185(3): 811--822 Molecular Genetic Analysis of Chd3 and Polytene Chromosome Region 76B-D in Drosophila melanogaster. [FBrf0211329] Jattani et al., 2009, Dev. Dyn. 238(4): 853--863 Deficiency screen identifies a novel role for beta 2 tubulin in salivary gland and myoblast migration in the Drosophila embryo. [FBrf0207774] Ryder et al., 2007, Genetics 177(1): 615--629 The DrosDel deletion collection: a Drosophila genomewide chromosomal deficiency resource. [FBrf0202170] Collins and Cohen, 2005, Genetics 170(1): 173--184 A genetic screen in Drosophila for identifying novel components of the hedgehog signaling pathway. [FBrf0188527]
Personal communication to FlyBase	DrosDel Project, 2007.6.25, DrosDel deletion data mapped to Release 5.1 (updated 2007-06-25). DrosDel deletion data mapped to Release 5.1 (updated 2007-06-25). [FBrf0205060] Ryder and Roote, 2005.11.4, Update from DrosDel Database - Release 4 mappings - November 2005. Update from DrosDel Database - Release 4 mappings - November 2005. [FBrf0188738] Ryder, 2003.6.17, Drosdel deletions. Drosdel deletions. [FBrf0161091]
FlyBase analysis	Millburn et al., 2012.8.1, Lines in aberration datasets (files on ftp site). Lines in aberration datasets (files on ftp site). [FBrf0219195] FlyBase Curators, 2008, Release 5 estimated cytology of aberrations with sequence-defined breakpoints. Release 5 estimated cytology of aberrations with sequence-defined breakpoints. [FBrf0206255] FlyBase, 2007, En masse symbol-based assigment of Aberration Class with respect to wild type. En masse symbol-based assigment of Aberration Class with respect to wild type. [FBrf0191808]