Aberration Dmel\Df(3R)ED6220

General Information
Symbol	Dmel\Df(3R)ED6220	Species	D. melanogaster
Name		FlyBase ID	FBab0037440
Feature type	chromosomal_deletion

Computed Breakpoints include	[96A7-96A7];[96C3-96C3];
Deleted segment	96A7--96C3
Map ( GBrowse )	Untitled Document
Sequence coordinates	3R:20,369,520..20,369,520 (Df(3R)ED6220:bk1) (DrosDel Project, 2007.6.25) 3R:21,009,495..21,009,495 (Df(3R)ED6220:bk2) (DrosDel Project, 2007.6.25)
Member of large scale dataset(s)	Dfs_DrosDel_set1 A set of isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Initial core set of 209 isogenic deletions provides ~60% euchromatic genome coverage. (Ryder et al., 2007)
Recent Updates
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Nature of the Aberration
Cytological Order
Progenitor	P{RS3r}CB-5361-3 (Ryder and Roote, 2004.11.10) P{RS5r}5-HA-1676 (Ryder and Roote, 2004.11.10)
Mutagen	FLPase (Ryder and Roote, 2004.11.10)
Class of aberration (relative to progenitor)	chromosomal_deletion (Ryder, 2003.6.17, Ryder and Roote, 2004.11.10)
Breakpoints	96A7;96C3 (FlyBase Curators, 2008)
Causes alleles
Carries alleles
Transposon Insertions	P{3'.RS5+3.3'}ED6220 (Ryder and Roote, 2004.11.10)
Formalized genetic data
Genetic mapping information
Comments
Comments on Cytology
	Confirmed by 3-step PCR confirmation as shown in http://www.drosdel.org.uk/del_confirm.php Confirmed by lack of complementation to a known lethal mutation predicted to fall between the progenitor insertions. (Ryder and Roote, 2005.11.4) Confirmed by PCR (using the 3-step process described on http://www.drosdel.org.uk/del_confirm.php). (Ryder and Roote, 2004.11.10) Limits of break 1 computationally determined from location of progenitor P insertion on genome sequence between P{PZ}crb⁰⁷²⁰⁷&P{PZ}BRWD3⁰⁵⁸⁴² and P{EP}CycB3^EP3127 Limits of break 2 computationally determined from location of progenitor P insertion on genome sequence between P{lacW}OstStt3^j2D9 and P{PZ}Aats-gln⁰⁵⁴⁶¹
Sequence Crossreferences
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name
Gene Deletion & Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted	CG11836 (Roote, 2004.9.30, Ryder and Roote, 2004.11.10) tld (Ryder and Roote, 2004.11.10)
Molecular Data
Genes NOT Deleted / Disrupted
Complementation Data
Molecular Data
Genes Duplicated
Complementation Data
Molecular Data
Genes NOT Duplicated
Complementation Data
Molecular Data
Related Comments

Phenotypic Data
In combination with other aberrations	Inferred to overlap with: Df(3R)BSC679. (Christensen et al., 2008.12.28)
NOT in combination with other aberrations
Stocks ( 3 )
Bloomington	9211 w¹¹¹⁸; Df(3R)ED6220, P{3'.RS5+3.3'}ED6220/TM6C, cu¹ Sb¹
Kyoto	150468 w¹¹¹⁸; Df(3R)ED6220 / TM6C, Sb¹ 150253 w¹¹¹⁸; Df(3R)ED6220 / TM6C, Sb¹
Notes on Origin
Discoverer
	Potential deficiency; could be generated as the recombinant product between the reduced derivatives of P{RS3}CB-5361-3 and P{RS5}5-HA-1676. (Ryder, 2003.6.17)
Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	Df(3R)ED6220 (Fraichard et al., 2006, FlyBase Curators, 2008, Christensen et al., 2008.12.28, Ma et al., 2010, Saleem et al., 2012, Frizzell et al., 2012, Weber et al., 2012) ED6220 (Shao et al., 2010)
Name Synonym
Secondary FlyBase IDs

References ( 16 )
Research paper	Frizzell et al., 2012, RNA 18(8): 1475--1486 Drosophila mutants show NMD pathway activity is reduced, but not eliminated, in the absence of Smg6. [FBrf0218868] Saleem et al., 2012, Mech. Dev. 129(5-8): 177--191 Drosophila melanogaster p24 trafficking proteins have vital roles in development and reproduction. [FBrf0219054] Weber et al., 2012, Genetics 191(1): 145--162 Novel regulators of planar cell polarity: a genetic analysis in Drosophila. [FBrf0218210] Ma et al., 2010, Development 137(22): 3775--3784 OSBP- and FAN-mediated sterol requirement for spermatogenesis in Drosophila. [FBrf0212194] Shao et al., 2010, PLoS ONE 5(4): e9938 A modifier screen for Bazooka/PAR-3 interacting genes in the Drosophila embryo epithelium. [FBrf0210449] Ryder et al., 2007, Genetics 177(1): 615--629 The DrosDel deletion collection: a Drosophila genomewide chromosomal deficiency resource. [FBrf0202170] Fraichard et al., 2006, Gene Expr. Patterns 6(8): 772--776 Tenectin, a novel extracellular matrix protein expressed during Drosophila melanogaster embryonic development. [FBrf0194070]
Personal communication to FlyBase	Christensen et al., 2008.12.28, Isolation and characterization of Df(3R)BSC679. Isolation and characterization of Df(3R)BSC679. [FBrf0206427] DrosDel Project, 2007.6.25, DrosDel deletion data mapped to Release 5.1 (updated 2007-06-25). DrosDel deletion data mapped to Release 5.1 (updated 2007-06-25). [FBrf0205060] Ryder and Roote, 2005.11.4, Update from DrosDel Database - Release 4 mappings - November 2005. Update from DrosDel Database - Release 4 mappings - November 2005. [FBrf0188738] Roote, 2004.9.30, Exel insertions. Exel insertions. [FBrf0179863] Ryder and Roote, 2004.11.10, DrosDel deletions confirmed by PCR and genetic tests. DrosDel deletions confirmed by PCR and genetic tests. [FBrf0179888] Ryder, 2003.6.17, Drosdel deletions. Drosdel deletions. [FBrf0161091]
FlyBase analysis	Millburn et al., 2012.8.1, Lines in aberration datasets (files on ftp site). Lines in aberration datasets (files on ftp site). [FBrf0219195] FlyBase Curators, 2008, Release 5 estimated cytology of aberrations with sequence-defined breakpoints. Release 5 estimated cytology of aberrations with sequence-defined breakpoints. [FBrf0206255] FlyBase, 2007, En masse symbol-based assigment of Aberration Class with respect to wild type. En masse symbol-based assigment of Aberration Class with respect to wild type. [FBrf0191808]