Aberration Dmel\Df(3L)Exel6107

General Information
Symbol	Dmel\Df(3L)Exel6107	Species	D. melanogaster
Name		FlyBase ID	FBab0038127
Feature type	chromosomal_deletion

Computed Breakpoints include	[64E5-64E5];[64F5-64F5];
Deleted segment	64E5--64F5
Map ( GBrowse )	Untitled Document
Sequence coordinates	3L:5,746,110..5,746,110 (Df(3L)Exel6107:bk1) (Bloomington Drosophila Stock Center, 2008.8.7) 3L:5,895,644..5,895,644 (Df(3L)Exel6107:bk2) (Bloomington Drosophila Stock Center, 2008.8.7)
Member of large scale dataset(s)	Dfs_Exelixis_set1 A set of isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Initial set of 519 isogenic deletions provides 56% genome coverage. The current Exelixis collection at the Bloomington Stock Center differs from the original described in FBrf0175003: a significant number were shown not to carry a deletion and have been removed from the collection; a number of stocks have been lost; a number of additional deletions are included that were generated after publication. (Parks et al., 2004, Cook, 2012.9.12)
Recent Updates
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FB2013_03
FB2013_02
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Nature of the Aberration
Cytological Order
Progenitor	P{XP}d03136 (Parks et al., 2004) P{XP}d08114 (Parks et al., 2004)
Mutagen	FLPase (Parks et al., 2004)
Class of aberration (relative to progenitor)	chromosomal_deletion (Parks et al., 2004)
Breakpoints	64E5;64F5 (Parks et al., 2004, FlyBase Curators, 2008)
Causes alleles
Carries alleles	w⁺ (Parks et al., 2004)
Transposon Insertions	P{XP-U}Exel6107 (Parks et al., 2004)
Formalized genetic data
Genetic mapping information
Comments
Comments on Cytology

Sequence Crossreferences
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name
Gene Deletion & Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted	E(smoDN)G (Collins, 2005.7.7) scny (Ribaya et al., 2009)
Molecular Data
Completely deleted	Bre1 (Ryder, 2004.4.26) CG5537 (Ryder, 2004.4.26) CG5568 (Ryder, 2004.4.26) CG5592 (Ryder, 2004.4.26) CG10576 (Ryder, 2004.4.26) CG13287 (Ryder, 2004.4.26) CG18586 (Ryder, 2004.4.26) CG32408 (Ryder, 2004.4.26) CG32409 (Ryder, 2004.4.26) CG42272 (Ryder, 2004.4.26) Cralbp (Ryder, 2004.4.26) mad2 (Ryder, 2004.4.26) Myt1 (Ryder, 2004.4.26) Pole2 (Ryder, 2004.4.26) Ppat-Dpck (Ryder, 2004.4.26) QC (Ryder, 2004.4.26) S6k (Ryder, 2004.4.26) scny (Ryder, 2004.4.26) Tektin-C (Ryder, 2004.4.26) Txl (Ryder, 2004.4.26) Ubp64E (Ryder, 2004.4.26) vito (Ryder, 2004.4.26) vn (Ryder, 2004.4.26)
Genes NOT Deleted / Disrupted
Complementation Data
	l(3)psg2 (Wang et al., 2008)
Molecular Data
Genes Duplicated
Complementation Data
Molecular Data
Genes NOT Duplicated
Complementation Data
Molecular Data
Related Comments
	Df(3L)Exel6107 fails to complement a quantitative trait locus for aggressive behaviour. (Edwards and Mackay, 2009)
Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations
Stocks ( 1 )
Bloomington	7586 w¹¹¹⁸; Df(3L)Exel6107, P{XP-U}Exel6107/TM6B, Tb¹
Notes on Origin
Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	Df(3L)Exel6107 (Crest et al., 2007, FlyBase Curators, 2008, Casso et al., 2008, Edwards and Mackay, 2009, Wang et al., 2008) Df(3L)exel6107 (Ribaya et al., 2009)
Name Synonym
Secondary FlyBase IDs

References ( 14 )
Research paper	Edwards and Mackay, 2009, Genetics 182(3): 889--897 Quantitative Trait Loci for Aggressive Behavior in Drosophila melanogaster. [FBrf0208371] Ribaya et al., 2009, Dev. Biol. 329(1): 25--35 The deubiquitinase emperor's thumb is a regulator of apoptosis in Drosophila. [FBrf0207701] Casso et al., 2008, Genetics 178(3): 1399--1413 A screen for modifiers of hedgehog signaling in Drosophila melanogaster identifies swm and mts. [FBrf0205418] Wang et al., 2008, Genetics 180(1): 269--281 A genetic screen identifies new regulators of steroid-triggered programmed cell death in Drosophila. [FBrf0207097] Crest et al., 2007, Genetics 175(2): 567--584 Onset of the DNA replication checkpoint in the early Drosophila embryo. [FBrf0194644] Parks et al., 2004, Nat. Genet. 36(3): 288--292 Systematic generation of high-resolution deletion coverage of the Drosophila melanogaster genome. [FBrf0175003]
Supplementary material	Parks et al., 2004, Nature Genetics 36(3): Supplementary Table 2. [FBrf0174230]
Personal communication to FlyBase	Cook, 2012.9.12, Notes on the Exelixis deletion collection. Notes on the Exelixis deletion collection. [FBrf0219608] Bloomington Drosophila Stock Center, 2008.8.7, Release 5 sequence coordinates of Exelixis deficiencies. Release 5 sequence coordinates of Exelixis deficiencies. [FBrf0205061] Collins, 2005.7.7, Genetics 2005 170:173-185. Genetics 2005 170:173-185. [FBrf0188528] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]
FlyBase analysis	Millburn et al., 2012.8.1, Lines in aberration datasets (files on ftp site). Lines in aberration datasets (files on ftp site). [FBrf0219195] FlyBase Curators, 2008, Release 5 estimated cytology of aberrations with sequence-defined breakpoints. Release 5 estimated cytology of aberrations with sequence-defined breakpoints. [FBrf0206255] FlyBase, 2007, En masse symbol-based assigment of Aberration Class with respect to wild type. En masse symbol-based assigment of Aberration Class with respect to wild type. [FBrf0191808]