FB2020_06, released Dec 22, 2020

Aberration: Dmel\Df(1)BSC297

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General Information
Symbol
Df(1)BSC297
Species
D. melanogaster
Name
FlyBase ID
FBab0045004
Feature type
chromosomal_deletion
Computed Breakpoints include

[6C12-6C12];[6D6-6D6];

Features within 6C12--6D6
Genomic Maps
Sequence coordinates
X:6,756,568..6,756,668 (Df(1)BSC297:bk1)
(Bloomington Drosophila Stock Center, 2008.8.7)
X:6,848,658..6,848,658 (Df(1)BSC297:bk2)
(Bloomington Drosophila Stock Center, 2008.8.7)
Member of large scale dataset(s)
Dfs_BSC_set2

A set of ~800 largely isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Designed to fill gaps in deletion coverage and breakpoint placement; also used to replace older available deficiencies that have not been molecularly mapped.

(Cook et al., 2012)
Nature of Aberration
Cytological Order
Progenitor
PBac{WH}Cht11f02328
(Christensen and Cook, 2007.5.8)
P{XP}sovd07849
(Christensen and Cook, 2007.5.8)
Mutagen
FLPase
(Christensen and Cook, 2007.5.8)
Class of aberration (relative to wild type)
chromosomal_deletion
(Christensen and Cook, 2007.5.8)
Class of aberration (relative to progenitor)
chromosomal_deletion
(Christensen and Cook, 2007.5.8)
Breakpoints

6C12;6D6

(FlyBase Curators, 2008)
Causes alleles
Carries alleles
Transposon Insertions
P+PBac{XP5.WH5}BSC297
(Christensen and Cook, 2007.5.8)
Formalized genetic data
Genetic mapping information
Comments

Breakpoint from FlyBase's release 5 sequence location of progenitor insertion.

(Bloomington Drosophila Stock Center, 2008.8.7)
Comments on Cytology

Cytological breakpoints of Df(1)BSC297 predicted from the progenitor P{XP}d07849 and PBac{WH}CG3044f02328 Release 5 genome coordinates are 6C12;6D6.

(Christensen and Cook, 2007.5.8)
Sequence Crossreferences
DDBJ / EMBL / GenBank
DNA sequence
Protein sequence
Gene Deletion and Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
shf
(Christensen and Cook, 2007.5.8)
sov
(Hammond et al., 2020, Benner et al., 2019)
xit
(Zhang et al., 2014)
Partially deleted / disrupted
Molecular Data
Completely deleted
Partially deleted
Genes NOT Deleted / Disrupted
Complementation Data
 
Molecular Data
 
Genes Duplicated
Complementation Data
Completely duplicated
Partially duplicated
Molecular Data
Completely duplicated
Partially duplicated
Genes NOT Duplicated
Complementation Data
 
Molecular Data
 
Affected Genes Inferred by Location
Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations
Stocks (1)
Notes on Origin
Discoverer
 
Balancer / Genotype Variants of the Aberration
 
Separable Components
 
Other Comments
 

Presence of P+PBac{XP5.WH5}BSC297 was verified using the PCR methods and primers described in FBrf0175003.

(Christensen and Cook, 2007.5.8)
Synonyms and Secondary IDs (2)
Reported As
Symbol Synonym
Df(1)BSC297
(Hammond et al., 2020, Benner et al., 2019, Zhang et al., 2014, Cook et al., 2012, FlyBase Curators, 2008, Christensen and Cook, 2007.5.8)
Df(1)FDD-0093541
(Cook and Ryder, 2007.5.14)
Name Synonyms
Secondary FlyBase IDs
    References (9)