FB2025_01 , released February 20, 2025
Aberration: Dmel\Df(2R)BSC402
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General Information
Symbol
Df(2R)BSC402
Species
D. melanogaster
Name
FlyBase ID
FBab0045185
Feature type
chromosomal_deletion
Computed Breakpoints include

[57A8-57A8];[57B1-57B1];

Features within 57A8--57B1
Genomic Maps
Sequence coordinates
2R:20,623,224..20,623,224 (Df(2R)BSC402:bk1)
(Bloomington Drosophila Stock Center, 2008.8.7)
2R:20,698,296..20,698,296 (Df(2R)BSC402:bk2)
(Bloomington Drosophila Stock Center, 2008.8.7)
Member of large scale dataset(s)
Dfs_BSC_set2

A set of ~800 largely isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Designed to fill gaps in deletion coverage and breakpoint placement; also used to replace older available deficiencies that have not been molecularly mapped.

(Cook et al., 2012)
Nature of Aberration
Cytological Order
Progenitor
PBac{RB}CG11180e03938
(Christensen et al., 2007.10.29)
P{XP}d10661
(Christensen et al., 2007.10.29)
Mutagen
FLPase
(Christensen et al., 2007.10.29)
Class of aberration (relative to wild type)
chromosomal_deletion
(FlyBase, 2007)
Class of aberration (relative to progenitor)
chromosomal_deletion
(Christensen et al., 2007.10.29)
Breakpoints

57A8;57B1

(FlyBase Curators, 2008)
Causes alleles
Carries alleles
Transposon Insertions
P+PBac{XP5.RB3}BSC402
(Christensen et al., 2007.10.29)
Formalized genetic data
Genetic mapping information
Comments

Breakpoint from FlyBase's release 5 sequence location of progenitor insertion.

(Bloomington Drosophila Stock Center, 2008.8.7)
Comments on Cytology

The cytological breakpoints of Df(2R)BSC402 predicted from the Release 5 genomic coordinates of the progenitor PBac{RB}CG11180e03938 and P{XP}d10661 transposable element insertions sites are 57A8;57B1.

(Christensen et al., 2007.10.29)
Sequence Crossreferences
DDBJ / EMBL / GenBank
DNA sequence
Protein sequence
Gene Deletion and Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
exu
(Christensen et al., 2007.10.29)
l(2)k02206
(Kahsai et al., 2016)
Partially deleted / disrupted
Molecular Data
Completely deleted
Partially deleted
Genes NOT Deleted / Disrupted
Complementation Data
 
Molecular Data
 
Genes Duplicated
Complementation Data
Completely duplicated
Partially duplicated
Molecular Data
Completely duplicated
Partially duplicated
Genes NOT Duplicated
Complementation Data
 
Molecular Data
 
Affected Genes Inferred by Location (22)
Phenotypic Data
In combination with other aberrations

Lethal in combination with Df(2R)BSC403.

(Kahsai et al., 2016)

Lethal in combination with Df(2R)Exel6070.

(Kahsai et al., 2016)

Lethal in combination with Df(2R)Exel7164.

(Kahsai et al., 2016)
NOT in combination with other aberrations
Stocks (1)
Notes on Origin
Discoverer
 
Balancer / Genotype Variants of the Aberration
 
Separable Components
 
Other Comments
 

The presence of P+PBac{XP5.RB3}BSC402 was verified using the PCR methods and primers described in FBrf0175003 with the substitution of the primer 5'-CCAATGCGTTTATTTCAGGTCACG-3' for the RB3' plus or RB3' minus primer in the Hybrid PCR protocol in the Supplementary Methods.

(Christensen et al., 2007.10.29)
Synonyms and Secondary IDs (1)
Reported As
Symbol Synonym
Df(2R)BSC402
(Kahsai et al., 2016, Cook et al., 2012, FlyBase Curators, 2008, Christensen et al., 2007.10.29, FlyBase, 2007)
Name Synonyms
Secondary FlyBase IDs
    References (7)