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General Information
D. melanogaster
FlyBase ID
Feature type
Sequence coordinates
3R:25,476,871..25,476,871 (Df(3R)BSC788:bk1)
3R:25,543,157..25,543,157 (Df(3R)BSC788:bk2)
Member of large scale dataset(s)

A set of ~800 largely isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Designed to fill gaps in deletion coverage and breakpoint placement; also used to replace older available deficiencies that have not been molecularly mapped.

Nature of Aberration
Cytological Order
Class of aberration (relative to wild type)
Class of aberration (relative to progenitor)
Causes alleles
Carries alleles
Formalized genetic data
Genetic mapping information
Comments on Cytology

The breakpoints of Df(3R)BSC788 predicted from the Release 5 genomic coordinates of the progenitor PBac{RB}CG4553e02716 and P{XP}msid08770 transposable element insertion sites are 3R:21302593 ;21368879 and the cytological breakpoints predicted from these coordinates are 96E1;96E3.

Sequence Crossreferences
DNA sequence
Protein sequence
Gene Deletion and Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
Partially deleted / disrupted
Molecular Data
Completely deleted
Partially deleted
Genes NOT Deleted / Disrupted
Complementation Data
Molecular Data
Genes Duplicated
Complementation Data
Completely duplicated
Partially duplicated
Molecular Data
Completely duplicated
Partially duplicated
Genes NOT Duplicated
Complementation Data
Molecular Data
Affected Genes Inferred by Location
Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations
Stocks (1)
Notes on Origin
Balancer / Genotype Variants of the Aberration
Separable Components
Other Comments

The presence of P+PBac{XP5.RB3}BSC788 was verified using the PCR methods and primers described in FBrf0175003 with the substitution of the primer 5’-GCTTCTAAACGCTTACGCATAAACGATG-3’ for the RB3’ plus or RB3’ minus primer in the Hybrid PCR protocol in the Supplementary Methods.

To confirm the presence of the deficiency, we showed that a 520 base pair fragment spanning the P{XP}d03120 (FBti0068833) insertion site could not be amplified from Df(3R)BSC788/P{XP}d03120 flies using the primers 5’-GGTGTGGTGGGGGCGAGTGAACCGC-3’ and 5’-CGATGAAAACGAATCCACGAATCGC-3’.

Synonyms and Secondary IDs (1)
Reported As
Symbol Synonym
Name Synonyms
Secondary FlyBase IDs
    References (3)