Aberration Dmel\Df(3R)BSC808

General Information
Symbol	Dmel\Df(3R)BSC808	Species	D. melanogaster
Name		FlyBase ID	FBab0045899
Feature type	chromosomal_deletion

Computed Breakpoints include
Deleted segment	92A11--92E1 (Estimated cytology)
Map ( GBrowse )	Untitled Document
Sequence coordinates	3R:15,444,823..15,444,823 (Df(3R)BSC808:bk1) (Christensen et al., 2009.5.6) 3R:16,110,136..16,110,136 (Df(3R)BSC808:bk2) (Christensen et al., 2009.5.6)
Member of large scale dataset(s)	Dfs_BSC_set2 A set of ~800 largely isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Designed to fill gaps in deletion coverage and breakpoint placement; also used to replace older available deficiencies that have not been molecularly mapped. (Cook et al., 2012)
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Nature of the Aberration
Cytological Order
Progenitor	P{XP}d05044 (Christensen et al., 2009.5.6) PBac{WH}CG6231^f01139 (Christensen et al., 2009.5.6)
Mutagen	FLPase (Christensen et al., 2009.5.6)
Class of aberration (relative to progenitor)	chromosomal_deletion (Christensen et al., 2009.5.6)
Breakpoints
Causes alleles
Carries alleles
Transposon Insertions	P+PBac{XP5.WH5}BSC808 (Christensen et al., 2009.5.6)
Formalized genetic data
Genetic mapping information
Comments
Comments on Cytology
	Exelixis, Inc. determined the insertion site of the progenitor P{XP}d05044 to be Release 3 genomic coordinate 16110153 on chromosome arm 3R. This corresponds to Release 5 coordinate 3R:16110136. The insertion site of the progenitor PBac{WH}CG6231[f01139] is Release 5 coordinate 3R:15444823. Consequently, the breakpoints of Df(3R)BSC808 predicted from the Release 5 genomic coordinates of the transposable element insertion sites are 3R:15444823;3R:16110136 and the cytological breakpoints predicted from these coordinates are 92A11;92E1. (Christensen et al., 2009.5.6)
Sequence Crossreferences
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name
Gene Deletion & Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted	bnl (Christensen et al., 2009.5.6) Vha13 (Christensen et al., 2009.5.6)
Molecular Data
Genes NOT Deleted / Disrupted
Complementation Data
Molecular Data
Genes Duplicated
Complementation Data
Molecular Data
Genes NOT Duplicated
Complementation Data
Molecular Data
Related Comments

Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations
Stocks ( 1 )
Bloomington	27379 w¹¹¹⁸; Df(3R)BSC808/TM6C, Sb¹ cu¹
Notes on Origin
Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments
	The presence of P+PBac{XP5.WH5}BSC808 was verified using the PCR methods and primers described in FBrf0175003. (Christensen et al., 2009.5.6)
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	Df(3R)BSC808 (Christensen et al., 2009.5.6, Cook et al., 2012)
Name Synonym
Secondary FlyBase IDs

References ( 4 )
Research paper	Cook et al., 2012, Genome Biol. 13(3): R21 The generation of chromosomal deletions to provide extensive coverage and subdivision of the Drosophila melanogaster genome. [FBrf0219066]
Supplementary material	Cook et al., 2012, Genome Biol. 13(3): Additional file 1. Breakpoints and characterization of BSC deletions. [FBrf0219069]
Personal communication to FlyBase	Christensen et al., 2009.5.6, Isolation and characterization of Df(3R)BSC808. Isolation and characterization of Df(3R)BSC808. [FBrf0207915]
FlyBase analysis	Millburn et al., 2012.8.1, Lines in aberration datasets (files on ftp site). Lines in aberration datasets (files on ftp site). [FBrf0219195]