FB2021_01, released Feb 18, 2021

Aberration: Dmel\Df(3L)BSC839

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General Information
Symbol
Df(3L)BSC839
Species
D. melanogaster
Name
FlyBase ID
FBab0045982
Feature type
chromosomal_deletion
Computed Breakpoints include
Features within 77B4--77C6 (Estimated cytology)
Genomic Maps
Sequence coordinates
3L:20,320,147..20,320,147 (Df(3L)BSC839:bk1)
(Christensen et al., 2009.7.22)
3L:20,493,208..20,493,208 (Df(3L)BSC839:bk2)
(Christensen et al., 2009.7.22)
Member of large scale dataset(s)
Dfs_BSC_set2

A set of ~800 largely isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Designed to fill gaps in deletion coverage and breakpoint placement; also used to replace older available deficiencies that have not been molecularly mapped.

(Cook et al., 2012)
Nature of Aberration
Cytological Order
Progenitor
PBac{WH}f03016
(Christensen et al., 2009.7.22)
P{XP}ZnT77Cd01634
(Christensen et al., 2009.7.22)
Mutagen
FLPase
(Christensen et al., 2009.7.22)
Class of aberration (relative to wild type)
chromosomal_deletion
(Christensen et al., 2009.7.22)
Class of aberration (relative to progenitor)
chromosomal_deletion
(Christensen et al., 2009.7.22)
Breakpoints
Causes alleles
Carries alleles
Transposon Insertions
P+PBac{XP5.WH5}BSC839
(Christensen et al., 2009.7.22)
Formalized genetic data
Genetic mapping information
Comments
Comments on Cytology

The breakpoints of Df(3L)BSC839 predicted from the Release 5 genomic coordinates of the progenitor PBac{WH}f03016 and P{XP}CG5130d01634 transposable element insertion sites are 3L:20313247 ;20486308 and the cytological breakpoints predicted from these coordinates are 77B4;77C6.

(Christensen et al., 2009.7.22)
Sequence Crossreferences
DDBJ / EMBL / GenBank
DNA sequence
Protein sequence
Gene Deletion and Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
fbl
(Christensen et al., 2009.7.22)
Prim2
(Christensen et al., 2009.7.22)
Partially deleted / disrupted
Molecular Data
Completely deleted
Hpd
(Belfiori-Carrasco et al., 2017)
Partially deleted
Genes NOT Deleted / Disrupted
Complementation Data
 
Molecular Data
 
Genes Duplicated
Complementation Data
Completely duplicated
Partially duplicated
Molecular Data
Completely duplicated
Partially duplicated
Genes NOT Duplicated
Complementation Data
 
Molecular Data
 
Affected Genes Inferred by Location
Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations
Stocks (1)
Notes on Origin
Discoverer
 
Balancer / Genotype Variants of the Aberration
 
Separable Components
 
Other Comments
 

The presence of P+PBac{XP5.WH5}BSC839 was verified using the PCR methods and primers described in FBrf0175003.

(Christensen et al., 2009.7.22)
Synonyms and Secondary IDs (3)
Reported As
Symbol Synonym
Def-BL27917
(Lye et al., 2013)
Df 27917
(Belfiori-Carrasco et al., 2017)
Df(3L)BSC839
(Garcia-Garcia et al., 2017, Cook et al., 2012, Christensen et al., 2009.7.22)
Name Synonyms
Secondary FlyBase IDs
    References (6)