FB2025_01 , released February 20, 2025
Aberration: Dmel\Df(2L)BSC860
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General Information
Symbol
Df(2L)BSC860
Species
D. melanogaster
Name
FlyBase ID
FBab0046058
Feature type
chromosomal_deletion
Computed Breakpoints include
Features within 38B1--38C5 (Estimated cytology)
Genomic Maps
Sequence coordinates
2L:20,035,763..20,035,763 (Df(2L)BSC860:bk1)
(Cook et al., 2009.11.25)
2L:20,310,769..20,310,769 (Df(2L)BSC860:bk2)
(Cook et al., 2009.11.25)
Member of large scale dataset(s)
Dfs_BSC_set2

A set of ~800 largely isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Designed to fill gaps in deletion coverage and breakpoint placement; also used to replace older available deficiencies that have not been molecularly mapped.

(Cook et al., 2012)
Nature of Aberration
Cytological Order
Progenitor
PBac{WH}sNPFf06876
(Cook et al., 2009.11.25)
P{XP}d05431
(Cook et al., 2009.11.25)
Mutagen
FLPase
(Cook et al., 2009.11.25)
Class of aberration (relative to wild type)
chromosomal_deletion
(Cook et al., 2009.11.25)
Class of aberration (relative to progenitor)
chromosomal_deletion
(Cook et al., 2009.11.25)
Breakpoints
Causes alleles
Carries alleles
Transposon Insertions
P+PBac{XP5.WH5}BSC860
(Cook et al., 2009.11.25)
Formalized genetic data
Genetic mapping information
Comments

Converted to release 5 coordinates from reported location in release 3 coordinates.

(Cook et al., 2009.11.25)

Sequence location of PBac{WH}sNPF[f06876].

(Cook et al., 2009.11.25)
Comments on Cytology

Exelixis, Inc. determined the insertion site of the progenitor P{XP}d05431 to be Release 3 genomic coordinate 20280511 on chromosome arm 2L. This corresponds to 38C5 on the Release 3 and Release 5 genome maps. The predicted position of the progenitor PBac{WH}sNPFf06876 on the Release 5 map is 38B1. Consequently, the cytological breakpoints of Df(2L)BSC860 are predicted to be 38B1;38C5.

(Cook et al., 2009.11.25)
Sequence Crossreferences
DDBJ / EMBL / GenBank
DNA sequence
Protein sequence
Gene Deletion and Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
barr
(Cook et al., 2009.11.25)
l(2)38Ab
(Kahsai and Cook, 2018)
Partially deleted / disrupted
Molecular Data
Completely deleted
Partially deleted
Genes NOT Deleted / Disrupted
Complementation Data
 
Molecular Data
 
Genes Duplicated
Complementation Data
Completely duplicated
Partially duplicated
Molecular Data
Completely duplicated
Partially duplicated
Genes NOT Duplicated
Complementation Data
 
Molecular Data
 
Affected Genes Inferred by Location (25)
Phenotypic Data
In combination with other aberrations
NOT in combination with other aberrations
Stocks (1)
Notes on Origin
Discoverer
 
Balancer / Genotype Variants of the Aberration
 
Separable Components
 
Other Comments
 

The presence of P+PBac{XP5.WH5}BSC860 was verified using the PCR methods and primers described in FBrf0175003.

(Cook et al., 2009.11.25)
Synonyms and Secondary IDs (1)
Reported As
Symbol Synonym
Df(2L)BSC860
(Kahsai and Cook, 2018, Cook et al., 2012, Nagel et al., 2012, Cook et al., 2009.11.25)
Name Synonyms
Secondary FlyBase IDs
    References (5)