42D;53C;58F;[42D-42D];[53C-53C];[58F-58F];
2R:16 ,682,351 (release 6 coordinates) is the 5' (proximal) end of a breakpoint associated with a deletion of 475bp of genomic sequence.
2R:16 ,682,827 (release 6 coordinates) is the 3' (distal) end of a breakpoint associated with a deletion of 475bp of genomic sequence.
The 2R:22 ,689,962 (release 6 coordinates) breakpoint is not associated with a duplication/deletion.
The 5' (proximal) side of the 42D breakpoint is present in two presumably identical copies juxtaposed to low-complexity sequence and maps to the 2L:6 ,916,809-6,917,405 interval.
The sequence on the distal side of the 42D breakpoint suggests CG30158 is disrupted.
This is the 3' (distal) breakpoint of the 42D break.
A second, intact copy of lncRNA:CR44763 is present elsewhere on SM5.
Dp(2;2)SM5 represents a complex rearrangement that includes a duplication of two chromosomal segments as well as inversions. The two duplicated segments lie adjacent to one another: one segment duplicates 42A7-42E1 while the other duplicates 58A4-59A2. The two copies of the two segments have a mirror-image arrangement with heterochromatin separating them. The two duplicated segments are joined to the end of the 53D1-42E1 segment, which is inverted relative to the progenitor as part of the complex rearrangement. The 58A4;42A7 inversion breakpoint is present within the duplication because it was present on the progenitor chromosome in the region that was duplicated.
