FlyBase Allele Report: Dmel\Atg18a[JF02898]

General Information

Symbol

Dmel\Atg18a^JF02898

Species

D. melanogaster

Name

FlyBase ID

FBal0240865

Feature type

allele

Associated gene

Dmel\Atg18a

Associated Insertion(s)

Carried in Construct

P{TRiP.JF02898}

Also Known As

UAS-Atg18 RNAi, Atg18^JF02898, UAS-Atg18a^RNAi, Atg18a RNAi

Key Links

Genomic Maps

JBrowse

Transgenic product class

RNAi_reagent

(Perkins et al., 2009)

Mutagen

in vitro construct

Nature of the Allele

Transgenic product class

RNAi_reagent

(Perkins et al., 2009)

Mutagen

in vitro construct

(Perkins et al., 2009)

Progenitor genotype

Carried in construct

P{TRiP.JF02898}

Cytology

Description

UAS regulatory sequences drive expression of an inverted repeat.

(Perkins et al., 2009)

Allele components

Component

Use(s)

Regulatory region(s)

UAS

binary expression system - regulatory region

Encoded product / tool

dsRNA-JF02898

Also carries

loxP

recombinase target site

Mutations Mapped to the Genome

Curation Data

Type

Location

Additional Notes

References

Variant Molecular Consequences

Associated Sequence Data

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

UniProtKB/Swiss-Prot

UniProtKB/TrEMBL

Expression Data

Reporter Expression

Additional Information

Statement

Reference

Marker for

Reflects expression of

Reporter construct used in assay

Human Disease Associations

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Disease

Interaction

References

Comments on Models/Modifiers Based on Experimental Evidence ( 0 )

Disease-implicated variant(s)

Phenotypic Data

Phenotypic Class

abnormal size | P-stage, with Scer\GAL4^NP0001

(Xu et al., 2015)

abnormal starvation stress response | larval stage, with Scer\GAL4^Cg.PU

(Xu et al., 2015)

decreased cell death | P-stage, with Scer\GAL4^NP0001

(Xu et al., 2015)

increased size | adult stage, with Scer\GAL4^nub-AC-62

(Tyra et al., 2020)

visible | adult stage, with Scer\GAL4^nub-AC-62

(Tyra et al., 2020)

Phenotype Manifest In

Detailed Description

Statement

Reference

The expression of Atg18a^JF02898 under the control of Scer\GAL4^ap-md544 does not affect wing curvature.

(Shinoda et al., 2019)

Expression of Atg18a^JF02898 under the control of Scer\GAL4^{Myo31DF-NP0001} results in significantly delayed midgut degradation after pupariation, with significantly increased size of the gastric caeca 0 hrs and 4 hrs after puparium formation, persistence of the midgut at 12 h after puparium formation, and significantly decreased autophagy levels 2 hrs after puparium formation, as compared to controls.

Expression of Atg18a^JF02898 under the control of Scer\GAL4^cg.PU results in a decrease in starvation-induced autophagy in the larval fat body, as compared to controls.

(Xu et al., 2015)

Expression of Atg18a^JF02898 under the control of Scer\GAL4^Mef2.PR is able to significantly suppress the formation of autophagosomes in the muscles of chloroquine-treated larvae starved on low-nutrient food for 6 hours.

(Zirin et al., 2013)

Expression of Atg18^JF02898 using Scer\GAL4^Act5C.PP results in basal autophagy defects in larval fat body cell somatic clones.

(Pircs et al., 2012)

External Data

Linkouts

Interactions

Show genetic interaction network for Enhancers & Suppressors

Phenotypic Class

NOT Enhancer of

Statement

Reference

Atg18a^JF02898, Scer\GAL4^bbg-C96 is a non-enhancer of visible phenotype of Scer\GAL4^bbg-C96, dom^RNAi.Sym.UAS

(Kwon et al., 2013)

Suppressor of

Statement

Reference

Atg18a^JF02898, Scer\GAL4^nub-AC-62 is a suppressor of visible | adult stage phenotype of Scer\GAL4^nub-AC-62, synr^{UAS.ORF.GW.Tag:HA}

(Ikegawa et al., 2023)

Atg18a^JF02898, Scer\GAL4^ap-md544 is a suppressor | partially of visible | adult stage phenotype of Dcp-1^KK106134, Scer\GAL4^ap-md544

(Shinoda et al., 2019)

Atg18a^JF02898, Scer\GAL4^ap-md544 is a suppressor of visible | adult stage phenotype of Decay^KK105137, Scer\GAL4^ap-md544

(Shinoda et al., 2019)

NOT Suppressor of

Statement

Reference

Atg18a^JF02898, Scer\GAL4^GMR.long is a non-suppressor of visible | adult stage phenotype of Ire1^UAS.Tag:V5, Scer\GAL4^GMR.long

(Yan et al., 2019)

Atg18a^JF02898, Scer\GAL4^bbg-C96 is a non-suppressor of visible phenotype of Scer\GAL4^bbg-C96, dom^RNAi.Sym.UAS

(Kwon et al., 2013)

Phenotype Manifest In

NOT Enhancer of

Statement

Reference

Atg18a^JF02898, Scer\GAL4^bbg-C96 is a non-enhancer of wing margin phenotype of Scer\GAL4^bbg-C96, dom^RNAi.Sym.UAS

(Kwon et al., 2013)

Suppressor of

Statement

Reference

Atg18a^JF02898, Scer\GAL4^nub-AC-62 is a suppressor of wing phenotype of Scer\GAL4^nub-AC-62, synr^{UAS.ORF.GW.Tag:HA}

(Ikegawa et al., 2023)

Atg18a^JF02898, Scer\GAL4^ap-md544 is a suppressor | partially of wing phenotype of Dcp-1^KK106134, Scer\GAL4^ap-md544

(Shinoda et al., 2019)

Atg18a^JF02898, Scer\GAL4^ap-md544 is a suppressor of wing phenotype of Decay^KK105137, Scer\GAL4^ap-md544

(Shinoda et al., 2019)

NOT Suppressor of

Statement

Reference

Atg18a^JF02898, Scer\GAL4^GMR.long is a non-suppressor of eye phenotype of Ire1^UAS.Tag:V5, Scer\GAL4^GMR.long

(Yan et al., 2019)

Atg18a^JF02898, Scer\GAL4^bbg-C96 is a non-suppressor of wing margin phenotype of Scer\GAL4^bbg-C96, dom^RNAi.Sym.UAS

(Kwon et al., 2013)

Additional Comments

Genetic Interactions

Statement

Reference

Co-expression of Atg18^JF02898 has no effect on the wing nicking phenotype caused by expression of dom^{dsRNA.Sym.Scer\UAS} under the control of Scer\GAL4^bbg-C96.

(Kwon et al., 2013)

Xenogenetic Interactions

Statement

Reference

Complementation and Rescue Data

Comments

Images (0)

Mutant

Wild-type

Stocks (1)

Bloomington

28061

y¹ v¹; P{TRiP.JF02898}attP2

Notes on Origin

Discoverer

External Crossreferences and Linkouts ( 0 )

Synonyms and Secondary IDs (2)

Reported As

Symbol Synonym

Atg18^JF02898

(Clark et al., 2018, Nagy et al., 2014)

Atg18a^JF02898

(Billes et al., 2018)

Name Synonyms

Secondary FlyBase IDs

References (19)

Report Sections

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