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General Information
Symbol
Dmel\RH54729
Species
D. melanogaster
Name
RH54729
FlyBase ID
FBcl0259830
Feature type
Computed gene(s)
 
Collection Status
BDGP
Known Problems
incomplete CDS
FlyBase assessment
    Library
    RH_cDNA
    • RH cap-trapped cDNA library of D. melanogaster, iso-1 strain, adult head.
    Strain
      Vector
      Tissue Source
      Stage
      Tissue/Position (including subcellular localization)
      Reference
      Sequence Data of the Insert
      Full Length Sequence
      Total bases
      4,471
      NCBI
      Full Length sequence dataSequence Downloader
      GCATGCAGTTTCGCTACCTGAAGAGCTTCAAGAAGCATCGCTTGAACCATGCCCTCGAGCGACTCCATGGCAAGAAGAGC
      GTGGGCGTGATCGGACGACTGGGCGGATCTGGTTCGGGACCCAGTTCATCGGCGATTTCCGTCTCGGTGGCGGCACCTAC
      TTCCGTTTCCGCCTCTGGATCGGTGACCTCGGTGGACCAGGATGTGGTCACCAGCTCGCAGGAGCCCATGCTGGCCGACG
      AGGGTGAGGATCTGCGCGTGAATGTGAAACGCGAGGGTACCGCCGATGAGCAGAGCGCCGAGTCGCGGGCCAACGACCTC
      GAGGAGCACGAACAGGACAACACCGTCGACTCCGCGGGCATCACGATGCTCTACCAGGACAACAACTCCTCGGCCTCGGC
      CTCCACCAGCGCCACCGAGCCGAACATAAGCAGCTCCGACGGCATTCATAGTACAAACAAGCGGTCGCGCCTGCACCACT
      TGGAAACGGATCCCTCCTATCCACACCATCATCACCACCACCACCACCATCACCATCAACAGCAGCACCACCAGGCGCAG
      CATCAGCACCACAATCCGCAGTCGCAGCTGCCGACCCACTTGGGCCACGTTTCACTGCCACTGGTGGCCACCTCGGCCGC
      CGGCTCCTCATCTTCGGCGGCTGCCGCTGCCGTTGTGGCCGCTGCCCAGGCACAGGTCAGTTCTGGCGCCACCGGAAGCG
      GCGCAACCGGAAGTGGTGCACCCGGCAGCGGCAACGTTGGCTCAGCAGGCAGCTCCGGTGCGGGCGGCGGCATAAGTTCC
      CTCAGCTCGCTCACATCCCTGATCAACGCCGAGCGCATTCCGAACGAGCAGTTCCTGGGACTCAATCCGCAGGAGGCATC
      CATCCTCAATTTCTTGCGCGTGGATGCCGCCGAGCGACAGAGGGACAAGCGACCGGCCACCTCGCGATTCGCGTGCCCCT
      TTTGCGGCAAGTGTGTGCGCTCCAAGGAGAATCTGAAGTTGCATGTGCGCAAGCACACCGGCGAAAGGCCGTTCGTGTGC
      CTCTTCTGCGGACGTGCCTTCGGTGGCAAGTCGGATCTGACCCGCCACCTGCGGATCCACACCGGCGAGCGGCCTTACCA
      CTGCGAGTCCTGCGGCAAGTGCTTCGCACGGGCGGACTATCTATCGAAGCACCTGACCACACACATTCACAATGCGCCGC
      GCTGAGATGAGGCGCGTAGGAGACGGCTCCTACGCAGATAAGGAACCAGCTCCATGATCAGACACGCTCACACACCAACA
      CACACACTAAATACAGGATATAACAAAGCCGTTGTGTATAAATCCTATTATTACCAGAAGCTCTACGATTAGATCGATGT
      AAGACACATTTTTTCGCTAGAGTTTTTTGTTTTTTTTTTCTTTTTTTTGGTGCAAGCTAGAGAAAAGCAAAATGACGGGC
      AACTAATTAGCACGGGTATTAAAGTGTTTAAGATTCTGAATATACACCTATCTCTCTAAAATATAAATATTATGTGTGGA
      GTAAGGTTTACGATTATAATTACGGATTATAATTATTATCGTAGCACAAGATTAAGTTTTTCTACAACTATGATTAAGTG
      CAGATGGTAACGAAATGCGACTTGGTTCTGTGAGACAAATTATTTCTAATTTCTAATAACAATAACATTAACGAAACAGC
      CACAAACAAAAAATAGCATCAGACGACACTGCAATACCAATTAAACAAAATAGTCTGTATTTTCTACCGAAACAAATGAA
      GTACCGCAGATCTGCCGTTGATATACACAATAGATAAAATATATTTAATTTTACACCGATCTATAGAAGCTAACTAGCAA
      CAATTTGTACAAAACAAACAAAAGCCGAGCAAACGAGAGGAAACTAACTTTGCAAGGATCAATGCAATAACTGAGTAAAC
      TCTGTTACCTACCACAGAAAACAATAAGCGATATGGGATTTTAGTTAATTCTAGTACAGCAACTGTACTGGAACTAGGCC
      AACCACTAAATACTACATGTAAAAAACAATGTTTCAACGATGCAAGTGCAAGCATTATTTATTCTTCGGTTGACCGATAA
      TATACACATATGTTCAGTATGGAGGCGTAGTTGGTTTATAGGATTATTGTAAAGCTAGGAGATACGAATGGGATCTACCA
      CCGTCAATAGTTTAATTTATATACATACAAAGCAAAGCAAAGCGAAGCAAGGCAAATCAAAGCAAAACAAAACTAAATAA
      AAAACAAACATAGCAACAATTAACAATTACCAATAGCAATTACAATTAAAACTGCAACTGCATACATGCAACTACAACAA
      CACAAAACTAACTGTGATCACAACAAGAGAAGAACATTGAAGTTTTAACTAACCTACAAACAAGCTAAACAGGCAAGAAT
      AGTTTATAGCGATGGCAACCATGGCAAGCAATAGAGAAATTGGACGGTGCTGGCAATCCTGCAGCTGCTGCATCGTCCAT
      CCGCTGGAAACGAAATGTGCAATTAAACAATAAAAACAATAAACTAGAGAAAGCCCAAAATGATTTCTCAACCGATATTT
      GTTTCATTTTTAACTTAGTTTAGCAGACACATACATACAACCAAACAGGAAAATCAAAAAATAAAACAACAAGCAACCTT
      GAACCAAGAACATCGAATTAAAGTGTAAAAAAAAAAAAGTGAAGAAATGAATCCGAAAAACTCAAATGCGTAGAAGGGTA
      GAATTCGAAGTTTTTTGTATTTAATAAATGTCTAACGCAATAAGGAGAGTAATGAGAATTGCCGTACCAAAAAAAGTGGA
      AAGTAAAAAAAACAAACACTGAGAACAAATCAAAGTAAAGTGGTAGAAGTAAAGTAAATGAAAACTTTCACTGTGCCAAA
      AAGTTTCAAGTACCTCATAATTTAACTAAATATTAAAGAGAAGCAACTAACCACACCGAAAACAGCCCACACAATCCACA
      AGCAGTCCACACACGATCCACACGCCCCCAAATAATAATTATACAAACATACATACATATATCCCGTAACGAAATGAGTC
      TAGACAGGAATTGTCAAAGCGTATGATTACATAGAAGCTGAAAGCTGAAAGCGAAGCGTTAACTAATCCTAATTTACCAA
      TCGGAGAGGGCTAGAAAATAGTTAGTTAGATAGAGATAGCGATAGACCTAGAGATAGGGACGGATATAGAATAGAGACAG
      AGACAGAGAGAGATGGCGCTGGCGATAGCGATAGCAAGAGAGAAAAACAGATAGAAACCGATTCAGCGCATGTGGAGATC
      TACCATCCAAAGGGGATCCACATGCATCGTATATCGTATATATCGAGCATGATGTGGGATCCCCGATTTTCGATTATTTT
      TTGTAATTTATTTATTCTCCAGCAACACAGTTCTGCCTACATTTTCTCTCTCCAAACTTAAGTGTTCAATCTTAGCGAAT
      ATATATTTTTGCCTTGGAATATATATGTTATGTGATAGTTTAACTAATTAACCGCACACCTTGAGTTATGCCTTTTTAGC
      AACAACATACTTTGCCTAATTATTATAACTTGATTGTAGCGAAAAGACAACAAATCACTTTATTTTCTCGATATATATGA
      TATAAGTTCTTTCAATTTCGATTGTGTCAGTATGTGAACCGTCAAAGATCAGGGCCTCTAGCAAATGTTATAGTTTTAGT
      TCATTATTATTATTATTATTATTATTACTGATAATCTGATGTGAATTTTTGAGCGGAACTTATTATAGAATTACCTTTCT
      TTGGTTCTCGATTTCTACTTGAATTACTATTTATTTTCCAACAACAACTACACTGCAACTGCAACCACAAACAGAAATCA
      AACACTGCCTTTTGTAAAAAAAAAAAAACACAAAAACCAGCAAGTATAATGCAAAATTTGTAATCTTACTATCTTAAGTT
      ACTCTTTTTTTTAAATCGTAATATTAATTTTTTTATGTTCACATCACAAATGCCGAAATCAATTTGAAAAACTCTGTTTT
      ACTTTATTTTTACTTTTATTTTTTTCCAAGCTCTACATTAAGTTTTTAAGCACAATAACAATAACAACAACAACAACAAC
      AACAACAAGCTGTGAGCTGTGTATGTGAATGAATTATTTGTATGAATATTATTACAGTTATGACACTCTTATTATTATCA
      ATTTTTTTGGAAACACTTATTATTTTGGAATTATTATTTGATAGTATTTATTAATAAAGTTTTTTGCAACGAACACATTA
      TTGTTTAACCATCTCGGGCACATCCGTCGATATGAAACCATCCGTCGATTTTCACTTCCTTGGTTAACCCACTATTTTGT
      ATGTTTATAGTTGAAAATGCGCCTTAAAAGAATTTTAGGAAACTAAGGTAAGAATAGTGGAGGGGCAAAACAAATTGTGT
      CATAAATACTCCATTTCGGTAAGATACAAAAACGTTTAATGTATTTAAGGAACCCAAAAAAAAAAAAAAAA
      
      Library Information (1)
      Library: RH_cDNA
      Description

      Cloned cDNAs prepared from polyadenylated RNA isolated from adult heads.

      Sample preparation

      For the RH cDNA library, adult heads were collected from an isogenic y; cn bw sp (iso-1) strain.

      Protocol

      RNA was polyA+ selected twice (RNA made by L. Hong). cDNA was synthesized by priming with the oligo(dT) primer adapter (5'-GAGAGAGAGAGGATCCAATACTGGAGAGTTTTTTTTTTTTTTTTVN-3'). The first strand was synthesized in presence of trehalose, which increases the full-length cDNA synthesis (Carninci, P. et al. 1998. Proc. Natl. Acad. Sci. U.S.A. 95(2): 520-524; Carninci, P. et al. 1999. Methods Enzymol. 303: 19-44). Full-length cDNA was selected with the biotinylated cap-trapper (Carninci, P. et al., Genomics 37: 327-336). A linker was then ligated to the single-strand cDNA following the published protocol (Shibata, Y., et al., Biotechniques, in press). Subsequently, the cDNA was normalized by using RoT=1.0 as published (Carninci, P., et al., Genome Res. 10: 1617-1630). Second strand cDNA was primed with the (5'-AGAGAGAGAGCTCGAGCTCTAATAAGGTGACACTATAGAACCA-3') primer. After restriction digestion of the hemimethylated cDNA with BamHI and XhoI, thecDNA was cloned in the lambda FLC-I vector. Subsequently, the library was bulk-excised into pFLC-I plasmid as described (Carninci, P., et al., Genomics, 2001, 77:79-90 ). cDNAs were transformed into DH5-alpha TonA strain.

      Comment
      Reported As
      Symbol Synonyms
      RH
      RH_cDNA
      Riken head library
      References (1)
      Research paper (1)
      Stapleton et al., 2002, Genome Res. 12(8): 1294--1300
      The Drosophila Gene Collection: identification of putative full-length cDNAs for 70% of D. melanogaster genes. [FBrf0152058]
      External Crossreferences and Linkouts ( 2 )
      Crossreferences
      Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
      Linkouts
      DGRC - Stock center for Drosophila cDNAs, vectors, and cell lines
      Synonyms and Secondary IDs (0)
      Reported As
      Symbol Synonym
      Secondary FlyBase IDs
        References (0)