Gene Dmel\7SLRNA:CR32864

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General Information

Symbol

Dmel\7SLRNA:CR32864

Species

D. melanogaster

Name

Signal recognition particle 7SL RNA CR32864

Annotation symbol

CR32864

Feature type

non_protein_coding_gene

FlyBase ID

FBgn0000003

Gene Model Status

Current

Stock availability

1 publicly available

Also Known As

7SL RNA

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

84A5-84A5

Sequence location

3R:2,648,220..2,648,518 [+]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

The gene Signal recognition particle 7SL RNA CR32864 is referred to in FlyBase by the symbol Dmel\7SLRNA:CR32864 (CR32864, FBgn0000003). It is a non_protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. Based on sequence similarity, it is predicted to be involved in the biological process: SRP-dependent cotranslational protein targeting to membrane. One allele is reported. No phenotypic data is available. It has one annotated transcript. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 18-24 hour embryonic stages, at stages throughout the larval period, in stages of adults of both sexes. CAVEAT: These RNA-Seq temporal profiles depend upon RNA-Seq reads that are uniquely placed in the genome. For this reason, genes such as histones, Stellates and many classes of RNA genes that are present in multiple exact or near exact copies in the genome, expression levels may be reported as much lower than their true values. Summary of FlyAtlas Anatomical Expression Data: No FlyAtlas data available because no Affy2 ProbeSet aligns to an exon of 7SLRNA. Comments on Affy2 ProbeSet: No relevant information because no Affy2 ProbeSet aligns to an exon of 7SLRNA. Gene sequence location is 3R:2648220..2648518.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

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Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

84A5-84A5

Limits computationally determined from genome sequence between P{PZ}pb⁰⁴⁴⁹⁸ and P{lacW}l(3)L2100^L2100

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\7SLRNA:CR32864 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

7SLRNA:CR32864-RA

FBtr0081624

NR_001992

299

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Name

X00952

X01056

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		22
central nervous system, larvae L3		11
central nervous system, pupae P8		17
head, virgin 1-day female		1
head, virgin 4-day female		2
head, virgin 20-day female		3
head, mated 1-day female		1
head, mated 4-day female		3
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		5
head, mated 20-day male		6
salivary gland, larvae L3 wandering		1859
salivary gland, white prepupae		3
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		5
digestive system, 4-day adult		3
digestive system, 20-day adult		6
fat body, larvae L3 wandering		3
fat body, white prepupae		2
fat body, pupae P8		60
carcass, larvae L3 wandering		8
carcass, 1-day adult		6
carcass, 4-day adult		3
carcass, 20-day adult		5
ovary, virgin 4-day female		6
ovary, mated 4-day female		1
testis, mated 4-day male		26
accessory gland, mated 4-day male		6
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		22
central nervous system, larvae L3		11
central nervous system, pupae P8		17
head, virgin 1-day female		1
head, virgin 4-day female		2
head, virgin 20-day female		3
head, mated 1-day female		1
head, mated 4-day female		3
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		5
head, mated 20-day male		6
salivary gland, larvae L3 wandering		(1859)
salivary gland, white prepupae		3
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		5
digestive system, 4-day adult		3
digestive system, 20-day adult		6
fat body, larvae L3 wandering		3
fat body, white prepupae		2
fat body, pupae P8		(60)
carcass, larvae L3 wandering		8
carcass, 1-day adult		6
carcass, 4-day adult		3
carcass, 20-day adult		5
ovary, virgin 4-day female		6
ovary, mated 4-day female		1
testis, mated 4-day male		26
accessory gland, mated 4-day male		6
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		22
central nervous system, larvae L3		11
central nervous system, pupae P8		17
head, virgin 1-day female		1
head, virgin 4-day female		2
head, virgin 20-day female		3
head, mated 1-day female		1
head, mated 4-day female		3
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		5
head, mated 20-day male		6
salivary gland, larvae L3 wandering		(1859)
salivary gland, white prepupae		3
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		5
digestive system, 4-day adult		3
digestive system, 20-day adult		6
fat body, larvae L3 wandering		3
fat body, white prepupae		2
fat body, pupae P8		60
carcass, larvae L3 wandering		8
carcass, 1-day adult		6
carcass, 4-day adult		3
carcass, 20-day adult		5
ovary, virgin 4-day female		6
ovary, mated 4-day female		1
testis, mated 4-day male		26
accessory gland, mated 4-day male		6
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		22
central nervous system, larvae L3		11
central nervous system, pupae P8		17
head, virgin 1-day female		1
head, virgin 4-day female		2
head, virgin 20-day female		3
head, mated 1-day female		1
head, mated 4-day female		3
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		5
head, mated 20-day male		6
salivary gland, larvae L3 wandering		1859
salivary gland, white prepupae		3
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		5
digestive system, 4-day adult		3
digestive system, 20-day adult		6
fat body, larvae L3 wandering		3
fat body, white prepupae		2
fat body, pupae P8		60
carcass, larvae L3 wandering		8
carcass, 1-day adult		6
carcass, 4-day adult		3
carcass, 20-day adult		5
ovary, virgin 4-day female		6
ovary, mated 4-day female		1
testis, mated 4-day male		26
accessory gland, mated 4-day male		6
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		22
central nervous system, larvae L3		11
central nervous system, pupae P8		17
head, virgin 1-day female		1
head, virgin 4-day female		2
head, virgin 20-day female		3
head, mated 1-day female		1
head, mated 4-day female		3
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		5
head, mated 20-day male		6
salivary gland, larvae L3 wandering		1859
salivary gland, white prepupae		3
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		5
digestive system, 4-day adult		3
digestive system, 20-day adult		6
fat body, larvae L3 wandering		3
fat body, white prepupae		2
fat body, pupae P8		60
carcass, larvae L3 wandering		8
carcass, 1-day adult		6
carcass, 4-day adult		3
carcass, 20-day adult		5
ovary, virgin 4-day female		6
ovary, mated 4-day female		1
testis, mated 4-day male		26
accessory gland, mated 4-day male		6
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		22
central nervous system, larvae L3		11
central nervous system, pupae P8		17
head, virgin 1-day female		1
head, virgin 4-day female		2
head, virgin 20-day female		3
head, mated 1-day female		1
head, mated 4-day female		3
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		5
head, mated 20-day male		6
salivary gland, larvae L3 wandering		(1859)
salivary gland, white prepupae		3
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		5
digestive system, 4-day adult		3
digestive system, 20-day adult		6
fat body, larvae L3 wandering		3
fat body, white prepupae		2
fat body, pupae P8		(60)
carcass, larvae L3 wandering		8
carcass, 1-day adult		6
carcass, 4-day adult		3
carcass, 20-day adult		5
ovary, virgin 4-day female		6
ovary, mated 4-day female		1
testis, mated 4-day male		26
accessory gland, mated 4-day male		6
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		22
central nervous system, larvae L3		11
central nervous system, pupae P8		17
head, virgin 1-day female		1
head, virgin 4-day female		2
head, virgin 20-day female		3
head, mated 1-day female		1
head, mated 4-day female		3
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		5
head, mated 20-day male		6
salivary gland, larvae L3 wandering		(1859)
salivary gland, white prepupae		3
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		5
digestive system, 4-day adult		3
digestive system, 20-day adult		6
fat body, larvae L3 wandering		3
fat body, white prepupae		2
fat body, pupae P8		60
carcass, larvae L3 wandering		8
carcass, 1-day adult		6
carcass, 4-day adult		3
carcass, 20-day adult		5
ovary, virgin 4-day female		6
ovary, mated 4-day female		1
testis, mated 4-day male		26
accessory gland, mated 4-day male		6
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		22
central nervous system, larvae L3		11
central nervous system, pupae P8		17
head, virgin 1-day female		1
head, virgin 4-day female		2
head, virgin 20-day female		3
head, mated 1-day female		1
head, mated 4-day female		3
head, mated 20-day female		5
head, mated 1-day male		7
head, mated 4-day male		5
head, mated 20-day male		6
salivary gland, larvae L3 wandering		1859
salivary gland, white prepupae		3
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		5
digestive system, 4-day adult		3
digestive system, 20-day adult		6
fat body, larvae L3 wandering		3
fat body, white prepupae		2
fat body, pupae P8		60
carcass, larvae L3 wandering		8
carcass, 1-day adult		6
carcass, 4-day adult		3
carcass, 20-day adult		5
ovary, virgin 4-day female		6
ovary, mated 4-day female		1
testis, mated 4-day male		26
accessory gland, mated 4-day male		6
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 18-24 hour embryonic stages, at stages throughout the larval period, in stages of adults of both sexes. CAVEAT: These RNA-Seq temporal profiles depend upon RNA-Seq reads that are uniquely placed in the genome. For this reason, genes such as histones, Stellates and many classes of RNA genes that are present in multiple exact or near exact copies in the genome, expression levels may be reported as much lower than their true values.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		46
embryo 02-04hr		90
embryo 04-06hr		15
embryo 06-08hr		43
embryo 08-10hr		58
embryo 10-12hr		46
embryo 12-14hr		46
embryo 14-16hr		59
embryo 16-18hr		77
embryo 18-20hr		201
embryo 20-22hr		186
embryo 22-24hr		60
larva L1		104
larva L2		66
larva L3 12hr old		289
larva L3 puffstage 1-2		124
larva L3 puffstage 3-6		183
larva L3 puffstage 7-9		43
white prepupae new		27
white prepupae 12hr		58
white prepupae 24hr		25
pupae 2d postWPP		22
pupae 3d postWPP		27
pupae 4d postWPP		50
adult male 01day		72
adult male 05day		164
adult male 30day		29
adult female 01day		69
adult female 05day		148
adult female 30day		270
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		(46)
embryo 02-04hr		(90)
embryo 04-06hr		15
embryo 06-08hr		(43)
embryo 08-10hr		(58)
embryo 10-12hr		(46)
embryo 12-14hr		(46)
embryo 14-16hr		(59)
embryo 16-18hr		(77)
embryo 18-20hr		(201)
embryo 20-22hr		(186)
embryo 22-24hr		(60)
larva L1		(104)
larva L2		(66)
larva L3 12hr old		(289)
larva L3 puffstage 1-2		(124)
larva L3 puffstage 3-6		(183)
larva L3 puffstage 7-9		(43)
white prepupae new		(27)
white prepupae 12hr		(58)
white prepupae 24hr		25
pupae 2d postWPP		22
pupae 3d postWPP		(27)
pupae 4d postWPP		(50)
adult male 01day		(72)
adult male 05day		(164)
adult male 30day		(29)
adult female 01day		(69)
adult female 05day		(148)
adult female 30day		(270)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		46
embryo 02-04hr		90
embryo 04-06hr		15
embryo 06-08hr		43
embryo 08-10hr		58
embryo 10-12hr		46
embryo 12-14hr		46
embryo 14-16hr		59
embryo 16-18hr		77
embryo 18-20hr		(201)
embryo 20-22hr		(186)
embryo 22-24hr		60
larva L1		104
larva L2		66
larva L3 12hr old		(289)
larva L3 puffstage 1-2		(124)
larva L3 puffstage 3-6		(183)
larva L3 puffstage 7-9		43
white prepupae new		27
white prepupae 12hr		58
white prepupae 24hr		25
pupae 2d postWPP		22
pupae 3d postWPP		27
pupae 4d postWPP		50
adult male 01day		72
adult male 05day		(164)
adult male 30day		29
adult female 01day		69
adult female 05day		(148)
adult female 30day		(270)
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		46
embryo 02-04hr		90
embryo 04-06hr		15
embryo 06-08hr		43
embryo 08-10hr		58
embryo 10-12hr		46
embryo 12-14hr		46
embryo 14-16hr		59
embryo 16-18hr		77
embryo 18-20hr		201
embryo 20-22hr		186
embryo 22-24hr		60
larva L1		104
larva L2		66
larva L3 12hr old		289
larva L3 puffstage 1-2		124
larva L3 puffstage 3-6		183
larva L3 puffstage 7-9		43
white prepupae new		27
white prepupae 12hr		58
white prepupae 24hr		25
pupae 2d postWPP		22
pupae 3d postWPP		27
pupae 4d postWPP		50
adult male 01day		72
adult male 05day		164
adult male 30day		29
adult female 01day		69
adult female 05day		148
adult female 30day		270
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		46
embryo 02-04hr		90
embryo 04-06hr		15
embryo 06-08hr		43
embryo 08-10hr		58
embryo 10-12hr		46
embryo 12-14hr		46
embryo 14-16hr		59
embryo 16-18hr		77
embryo 18-20hr		201
embryo 20-22hr		186
embryo 22-24hr		60
larva L1		104
larva L2		66
larva L3 12hr old		289
larva L3 puffstage 1-2		124
larva L3 puffstage 3-6		183
larva L3 puffstage 7-9		43
white prepupae new		27
white prepupae 12hr		58
white prepupae 24hr		25
pupae 2d postWPP		22
pupae 3d postWPP		27
pupae 4d postWPP		50
adult male 01day		72
adult male 05day		164
adult male 30day		29
adult female 01day		69
adult female 05day		148
adult female 30day		270
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		(46)
embryo 02-04hr		(90)
embryo 04-06hr		15
embryo 06-08hr		(43)
embryo 08-10hr		(58)
embryo 10-12hr		(46)
embryo 12-14hr		(46)
embryo 14-16hr		(59)
embryo 16-18hr		(77)
embryo 18-20hr		(201)
embryo 20-22hr		(186)
embryo 22-24hr		(60)
larva L1		(104)
larva L2		(66)
larva L3 12hr old		(289)
larva L3 puffstage 1-2		(124)
larva L3 puffstage 3-6		(183)
larva L3 puffstage 7-9		(43)
white prepupae new		27
white prepupae 12hr		(58)
white prepupae 24hr		25
pupae 2d postWPP		22
pupae 3d postWPP		27
pupae 4d postWPP		(50)
adult male 01day		(72)
adult male 05day		(164)
adult male 30day		29
adult female 01day		(69)
adult female 05day		(148)
adult female 30day		(270)
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		46
embryo 02-04hr		90
embryo 04-06hr		15
embryo 06-08hr		43
embryo 08-10hr		58
embryo 10-12hr		46
embryo 12-14hr		46
embryo 14-16hr		59
embryo 16-18hr		77
embryo 18-20hr		(201)
embryo 20-22hr		(186)
embryo 22-24hr		60
larva L1		104
larva L2		66
larva L3 12hr old		(289)
larva L3 puffstage 1-2		124
larva L3 puffstage 3-6		(183)
larva L3 puffstage 7-9		43
white prepupae new		27
white prepupae 12hr		58
white prepupae 24hr		25
pupae 2d postWPP		22
pupae 3d postWPP		27
pupae 4d postWPP		50
adult male 01day		72
adult male 05day		(164)
adult male 30day		29
adult female 01day		69
adult female 05day		(148)
adult female 30day		(270)
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		46
embryo 02-04hr		90
embryo 04-06hr		15
embryo 06-08hr		43
embryo 08-10hr		58
embryo 10-12hr		46
embryo 12-14hr		46
embryo 14-16hr		59
embryo 16-18hr		77
embryo 18-20hr		201
embryo 20-22hr		186
embryo 22-24hr		60
larva L1		104
larva L2		66
larva L3 12hr old		289
larva L3 puffstage 1-2		124
larva L3 puffstage 3-6		183
larva L3 puffstage 7-9		43
white prepupae new		27
white prepupae 12hr		58
white prepupae 24hr		25
pupae 2d postWPP		22
pupae 3d postWPP		27
pupae 4d postWPP		50
adult male 01day		72
adult male 05day		164
adult male 30day		29
adult female 01day		69
adult female 05day		148
adult female 30day		270
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		16
Schneider line 2 Sg4		16
embryonic 1182-4H		7
embryonic GM2		11
embryonic Kc167		9
embryonic S1		7
embryonic S3		11
leg disc CME L1		4
wing disc CME-W2		5
wing disc ML-DmD8		9
wing disc ML-DmD9		11
wing disc ML-DmD16-c3		2
wing disc ML-DmD21		4
wing disc ML-DmD32		3
haltere disc ML-DmD17-c3		11
eye-antennal disc ML-DmD11		8
antennal disc ML-DmD20-c5		14
mixed discs ML-DmD4-c1		3
CNS ML-DmBG1-c1		9
CNS ML-DmBG2-c2		9
tumorous blood cells mbn2		21
ovary fGS/OSS		3
ovary OSC		0
ovary OSS		8
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		16
Schneider line 2 Sg4		16
embryonic 1182-4H		7
embryonic GM2		11
embryonic Kc167		9
embryonic S1		7
embryonic S3		11
leg disc CME L1		4
wing disc CME-W2		5
wing disc ML-DmD8		9
wing disc ML-DmD9		11
wing disc ML-DmD16-c3		2
wing disc ML-DmD21		4
wing disc ML-DmD32		3
haltere disc ML-DmD17-c3		11
eye-antennal disc ML-DmD11		8
antennal disc ML-DmD20-c5		14
mixed discs ML-DmD4-c1		3
CNS ML-DmBG1-c1		9
CNS ML-DmBG2-c2		9
tumorous blood cells mbn2		21
ovary fGS/OSS		3
ovary OSC		0
ovary OSS		8
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		16
Schneider line 2 Sg4		16
embryonic 1182-4H		7
embryonic GM2		11
embryonic Kc167		9
embryonic S1		7
embryonic S3		11
leg disc CME L1		4
wing disc CME-W2		5
wing disc ML-DmD8		9
wing disc ML-DmD9		11
wing disc ML-DmD16-c3		2
wing disc ML-DmD21		4
wing disc ML-DmD32		3
haltere disc ML-DmD17-c3		11
eye-antennal disc ML-DmD11		8
antennal disc ML-DmD20-c5		14
mixed discs ML-DmD4-c1		3
CNS ML-DmBG1-c1		9
CNS ML-DmBG2-c2		9
tumorous blood cells mbn2		21
ovary fGS/OSS		3
ovary OSC		0
ovary OSS		8
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		16
Schneider line 2 Sg4		16
embryonic 1182-4H		7
embryonic GM2		11
embryonic Kc167		9
embryonic S1		7
embryonic S3		11
leg disc CME L1		4
wing disc CME-W2		5
wing disc ML-DmD8		9
wing disc ML-DmD9		11
wing disc ML-DmD16-c3		2
wing disc ML-DmD21		4
wing disc ML-DmD32		3
haltere disc ML-DmD17-c3		11
eye-antennal disc ML-DmD11		8
antennal disc ML-DmD20-c5		14
mixed discs ML-DmD4-c1		3
CNS ML-DmBG1-c1		9
CNS ML-DmBG2-c2		9
tumorous blood cells mbn2		21
ovary fGS/OSS		3
ovary OSC		0
ovary OSS		8
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		16
Schneider line 2 Sg4		16
embryonic 1182-4H		7
embryonic GM2		11
embryonic Kc167		9
embryonic S1		7
embryonic S3		11
leg disc CME L1		4
wing disc CME-W2		5
wing disc ML-DmD8		9
wing disc ML-DmD9		11
wing disc ML-DmD16-c3		2
wing disc ML-DmD21		4
wing disc ML-DmD32		3
haltere disc ML-DmD17-c3		11
eye-antennal disc ML-DmD11		8
antennal disc ML-DmD20-c5		14
mixed discs ML-DmD4-c1		3
CNS ML-DmBG1-c1		9
CNS ML-DmBG2-c2		9
tumorous blood cells mbn2		21
ovary fGS/OSS		3
ovary OSC		0
ovary OSS		8
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		16
Schneider line 2 Sg4		16
embryonic 1182-4H		7
embryonic GM2		11
embryonic Kc167		9
embryonic S1		7
embryonic S3		11
leg disc CME L1		4
wing disc CME-W2		5
wing disc ML-DmD8		9
wing disc ML-DmD9		11
wing disc ML-DmD16-c3		2
wing disc ML-DmD21		4
wing disc ML-DmD32		3
haltere disc ML-DmD17-c3		11
eye-antennal disc ML-DmD11		8
antennal disc ML-DmD20-c5		14
mixed discs ML-DmD4-c1		3
CNS ML-DmBG1-c1		9
CNS ML-DmBG2-c2		9
tumorous blood cells mbn2		21
ovary fGS/OSS		3
ovary OSC		0
ovary OSS		8
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		16
Schneider line 2 Sg4		16
embryonic 1182-4H		7
embryonic GM2		11
embryonic Kc167		9
embryonic S1		7
embryonic S3		11
leg disc CME L1		4
wing disc CME-W2		5
wing disc ML-DmD8		9
wing disc ML-DmD9		11
wing disc ML-DmD16-c3		2
wing disc ML-DmD21		4
wing disc ML-DmD32		3
haltere disc ML-DmD17-c3		11
eye-antennal disc ML-DmD11		8
antennal disc ML-DmD20-c5		14
mixed discs ML-DmD4-c1		3
CNS ML-DmBG1-c1		9
CNS ML-DmBG2-c2		9
tumorous blood cells mbn2		21
ovary fGS/OSS		3
ovary OSC		0
ovary OSS		8
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		16
Schneider line 2 Sg4		16
embryonic 1182-4H		7
embryonic GM2		11
embryonic Kc167		9
embryonic S1		7
embryonic S3		11
leg disc CME L1		4
wing disc CME-W2		5
wing disc ML-DmD8		9
wing disc ML-DmD9		11
wing disc ML-DmD16-c3		2
wing disc ML-DmD21		4
wing disc ML-DmD32		3
haltere disc ML-DmD17-c3		11
eye-antennal disc ML-DmD11		8
antennal disc ML-DmD20-c5		14
mixed discs ML-DmD4-c1		3
CNS ML-DmBG1-c1		9
CNS ML-DmBG2-c2		9
tumorous blood cells mbn2		21
ovary fGS/OSS		3
ovary OSC		0
ovary OSS		8
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Cell Line		Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		46
cold shock, 4-day adult		55
heat shock, 4-day adult		2
Cadmium 50 mM 6 hrs, larvae L3		5
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		3
Cadmium 100 mM 48 hrs, 4-day adult		2
Copper 0.5 mM 12 hrs, larvae L3		42
Copper 15 mM 48 hrs, 4-day adult		3
Zinc 5 mM 12 hrs, larvae L3		39
Zinc 4.5 mM 48 hrs, 4-day adult		19
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		2
Ethanol 10% 3 hrs, larvae L3		9
Caffeine 1.5 mg/ml 4 hrs, larvae L3		3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		49
Paraquat 5 mM 48 hrs, 4-day adult		2
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		1
Rotenone 8 μg 12 hrs, larvae L3		9
Expression Level Scale		Very low Low Moderate Moderately high High

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		(46)
cold shock, 4-day adult		(55)
heat shock, 4-day adult		2
Cadmium 50 mM 6 hrs, larvae L3		5
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		3
Cadmium 100 mM 48 hrs, 4-day adult		2
Copper 0.5 mM 12 hrs, larvae L3		(42)
Copper 15 mM 48 hrs, 4-day adult		3
Zinc 5 mM 12 hrs, larvae L3		(39)
Zinc 4.5 mM 48 hrs, 4-day adult		19
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		2
Ethanol 10% 3 hrs, larvae L3		9
Caffeine 1.5 mg/ml 4 hrs, larvae L3		3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		(49)
Paraquat 5 mM 48 hrs, 4-day adult		2
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		1
Rotenone 8 μg 12 hrs, larvae L3		9
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		46
cold shock, 4-day adult		55
heat shock, 4-day adult		2
Cadmium 50 mM 6 hrs, larvae L3		5
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		3
Cadmium 100 mM 48 hrs, 4-day adult		2
Copper 0.5 mM 12 hrs, larvae L3		42
Copper 15 mM 48 hrs, 4-day adult		3
Zinc 5 mM 12 hrs, larvae L3		39
Zinc 4.5 mM 48 hrs, 4-day adult		19
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		2
Ethanol 10% 3 hrs, larvae L3		9
Caffeine 1.5 mg/ml 4 hrs, larvae L3		3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		49
Paraquat 5 mM 48 hrs, 4-day adult		2
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		1
Rotenone 8 μg 12 hrs, larvae L3		9
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		46
cold shock, 4-day adult		55
heat shock, 4-day adult		2
Cadmium 50 mM 6 hrs, larvae L3		5
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		3
Cadmium 100 mM 48 hrs, 4-day adult		2
Copper 0.5 mM 12 hrs, larvae L3		42
Copper 15 mM 48 hrs, 4-day adult		3
Zinc 5 mM 12 hrs, larvae L3		39
Zinc 4.5 mM 48 hrs, 4-day adult		19
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		2
Ethanol 10% 3 hrs, larvae L3		9
Caffeine 1.5 mg/ml 4 hrs, larvae L3		3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		49
Paraquat 5 mM 48 hrs, 4-day adult		2
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		1
Rotenone 8 μg 12 hrs, larvae L3		9
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		46
cold shock, 4-day adult		55
heat shock, 4-day adult		2
Cadmium 50 mM 6 hrs, larvae L3		5
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		3
Cadmium 100 mM 48 hrs, 4-day adult		2
Copper 0.5 mM 12 hrs, larvae L3		42
Copper 15 mM 48 hrs, 4-day adult		3
Zinc 5 mM 12 hrs, larvae L3		39
Zinc 4.5 mM 48 hrs, 4-day adult		19
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		2
Ethanol 10% 3 hrs, larvae L3		9
Caffeine 1.5 mg/ml 4 hrs, larvae L3		3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		49
Paraquat 5 mM 48 hrs, 4-day adult		2
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		1
Rotenone 8 μg 12 hrs, larvae L3		9
Expression Level Scale		Very low Low Moderate Moderately high High

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		(46)
cold shock, 4-day adult		(55)
heat shock, 4-day adult		2
Cadmium 50 mM 6 hrs, larvae L3		5
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		3
Cadmium 100 mM 48 hrs, 4-day adult		2
Copper 0.5 mM 12 hrs, larvae L3		(42)
Copper 15 mM 48 hrs, 4-day adult		3
Zinc 5 mM 12 hrs, larvae L3		(39)
Zinc 4.5 mM 48 hrs, 4-day adult		19
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		2
Ethanol 10% 3 hrs, larvae L3		9
Caffeine 1.5 mg/ml 4 hrs, larvae L3		3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		(49)
Paraquat 5 mM 48 hrs, 4-day adult		2
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		1
Rotenone 8 μg 12 hrs, larvae L3		9
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		46
cold shock, 4-day adult		55
heat shock, 4-day adult		2
Cadmium 50 mM 6 hrs, larvae L3		5
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		3
Cadmium 100 mM 48 hrs, 4-day adult		2
Copper 0.5 mM 12 hrs, larvae L3		42
Copper 15 mM 48 hrs, 4-day adult		3
Zinc 5 mM 12 hrs, larvae L3		39
Zinc 4.5 mM 48 hrs, 4-day adult		19
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		2
Ethanol 10% 3 hrs, larvae L3		9
Caffeine 1.5 mg/ml 4 hrs, larvae L3		3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		49
Paraquat 5 mM 48 hrs, 4-day adult		2
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		1
Rotenone 8 μg 12 hrs, larvae L3		9
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		46
cold shock, 4-day adult		55
heat shock, 4-day adult		2
Cadmium 50 mM 6 hrs, larvae L3		5
Cadmium 50 mM 12 hrs, larvae L3		6
Cadmium 50 mM 48 hrs, 4-day adult		3
Cadmium 100 mM 48 hrs, 4-day adult		2
Copper 0.5 mM 12 hrs, larvae L3		42
Copper 15 mM 48 hrs, 4-day adult		3
Zinc 5 mM 12 hrs, larvae L3		39
Zinc 4.5 mM 48 hrs, 4-day adult		19
Ethanol 2.5% 3 hrs, larvae L3		5
Ethanol 5% 3 hrs, larvae L3		2
Ethanol 10% 3 hrs, larvae L3		9
Caffeine 1.5 mg/ml 4 hrs, larvae L3		3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		49
Paraquat 5 mM 48 hrs, 4-day adult		2
Paraquat 10 mM 48 hrs, 4-day adult		5
Rotenone 2 μg 12 hrs, larvae L3		1
Rotenone 8 μg 12 hrs, larvae L3		9
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

External Data & Images

Linkouts

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of 7SLRNA:CR32864	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of 7SLRNA:CR32864	Class	Mutagen	Stocks	Known lesion
7SLRNA:CR32864^GLC01459		in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{TRiP.GLC01459}

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 2 terms )

Molecular Function ( 0 terms)

Biological Process

CV term

Evidence

References

SRP-dependent cotranslational protein targeting to membrane

inferred from sequence or structural similarity

(Gundelfinger et al., 1984)

Cellular Component

CV term

Evidence

References

signal recognition particle, endoplasmic reticulum targeting

inferred from sequence or structural similarity

(Gundelfinger et al., 1984)

Sequence Ontology: Class of Gene

non_protein_coding_gene

nuclear_gene

SRP_RNA_gene

(FlyBase Genome Annotators, 2011)

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

7SLRNA:CR32864 allele

Gene

References

External Data

Linkouts

Orthologs

OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

No orthologs identified

Dipteran inclusive ortholog search

No orthologs identified

Insect inclusive ortholog search

No orthologs identified

Arthropod inclusive ortholog search

No orthologs identified

Metazoa inclusive ortholog search

No orthologs identified

Orthologs in Drosophila Species (None identified)

No orthologies identified

Orthologs in non-Drosophila Dipterans (None identified)

No non-Drosophilid orthologies identified

Orthologs in non-Dipteran Insects (None identified)

No non-Dipteran orthologies identified

Orthologs in non-Insect Arthropods (None identified)

No non-Insect Arthropod orthologies identified

Orthologs in non-Arthropod Metazoa (None identified)

No non-Arthropod Metazoa orthologies identified

Human Orthologs (0)

Gene

OMIM

HGNC

AAA Orthologs (0) based on analysis using Dmel annotation version 4.3

No orthologs identified

Stocks & Reagents

Stocks Listed in FlyBase ( 1 )

Bloomington

43270

y¹ sc^* v¹; P{TRiP.GLC01459}attP2

Genomic Clones ( 1 )

BACR19D23

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 0 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0000003

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

3771948

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Other Comments

New annotation (CR32864) in release 3 of the genome annotation.

(FlyBase Genome Annotators, 2002-2003)

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NR_001992

DDBJ / EMBL / GenBank

•

Entrez Gene - A searchable database of RefSeq genes.

•

3771948

Other Crossreferences

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0000003

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0000003

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

3771948

modMine - Data generated by the modENCODE project.

•

FBgn0000003

Synonyms & Secondary IDs ( 6 )

Reported As

Symbol Synonym

7SL RNA

(Isogai et al., 2007, Tortoriello et al., 2009)

7SLRNA

7SLRNA:CR32864

(FlyBase Genome Annotators, 2011)

CR32864

(Isogai et al., 2007, Ni et al., 2010.12.1)

Name Synonym

RNA 7SL

Signal recognition particle 7SL RNA CR32864

Secondary FlyBase IDs

References ( 8 )

Research paper

Tortoriello et al., 2009, Gene 436(1-2): 56--65: A novel Drosophila antisense scaRNA with a predicted guide function. [FBrf0207803]
Isogai et al., 2007, EMBO J. 26(1): 79--89: Novel TRF1/BRF target genes revealed by genome-wide analysis of Drosophila Pol III transcription. [FBrf0193326]
Misra et al., 2002, Genome Biol. 3(12): RESEARCH0083: Annotation of the Drosophila melanogaster euchromatic genome: a systematic review. [FBrf0155827]
Gundelfinger et al., 1984, EMBO J. 3: 2325--2332: Structure and evolution of the 7SL RNA component of the signal recognition particle. [FBrf0040773]

Personal communication to FlyBase

Ni et al., 2010.12.1, A genome-scale shRNA resource for transgenic RNAi in Drosophila.: A genome-scale shRNA resource for transgenic RNAi in Drosophila. [FBrf0212437]

FlyBase analysis

FlyBase Genome Annotators, 2011, Changes affecting gene model number or type in release 5.38 of the annotated D.melanogaster genome.: Changes affecting gene model number or type in release 5.38 of the annotated D.melanogaster genome. [FBrf0213717]
FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome.: Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886]
FlyBase, 1996-, FlyBase inference based on genome sequence analysis.: FlyBase inference based on genome sequence analysis. [FBrf0104946]