A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\Adh

General Information
SymbolDmel\AdhSpeciesD. melanogaster
NameAlcohol dehydrogenaseAnnotation symbolCG3481
Feature typeprotein_coding_geneFlyBase IDFBgn0000055
Created / Updated2005-09-09/2005-09-09
Genomic Location
Chromosome (arm)2LRecombination map2-50.1
Cytogenetic map35B3-35B3Sequence location2L:14,615,555..14,618,902 [+]
Map ( GBrowse ) detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene Alcohol dehydrogenase is referred to in FlyBase by the symbol Adh (CG3481, FBgn0000055). It has the cytological map location 35B3. Its sequence location is 2L:14615555..14618902. Its molecular function is described as: alcohol dehydrogenase activity; GTP binding; 7S RNA binding. It is involved in the biological processes: ethanol oxidation; behavioral response to ethanol; alcohol metabolic process; SRP-dependent cotranslational protein targeting to membrane. 584 alleles are reported. No phenotypic data is available. It has 5 annotated transcripts and 5 annotated polypeptides.

hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
Adh: Alcohol dehydrogenase (M. Ashburner)
Structural gene for alcohol dehydrogenase [ADH (EC 1.1.1.1)]. Natural populations are polymorphic for three electrophoretic alleles (AdhF, AdhS, AdhF-ChD) and for three rarer electrophoretic alleles (AdhUS, AdhF', AdhUF). The frequency of the AdhF allele increases, at the expense of AdhS, with increasing latitude in both northern and southern hemispheres [Johnson and Schaffer, 1973, Biochem. Genet. 10: 149-63; Vigue and Johnson, 1973, Biochem. Genet. 9: 213-27; Wilks, Gibson, Oakeshott and Chambers, 1980, Aust. J. Biol. Sci. 33: 575-85; Anderson, 1981, Genetic Studies of Drosophila Populations (Gibson and Oakes, eds.). Australian National University Press, pp. 237-50; Anderson and Chambers, 1982, Evolution 36: 86-96]. Confers resistance to ethanol; flies lacking ADH rapidly become intoxicated and eventually die on exposure to ethanol (Grell, Jacobson and Murphy, 1968, Ann. N.Y. Acad. Sci 151: 441-45; Vigue and Sofer, 1976, Biochem. Genet. 14: 127-135; David, Bocquet, Arens and Fouillet, 1976, Biochem. Genet. 14: 989-97). However, ethanol sensitivity is complex since even Adh nulls are more resistant to ethanol when young than when old (Vigue and Sofer, 1976; Tsubota). Adh+ flies are killed by low concentrations of unsaturated secondary alcohols (e.g. 1-penten-3-ol; 1-pentyn-3-ol) but not by unsaturated primary alcohols (e.g. 1-penten-1-ol) (Sofer and Hatkoff, 1972, Genetics 72: 545-49), presumably due to the formation of toxic ketones. This allows the chemical selection of Adh nulls (Sofer and Hatkoff, 1972; O'Donnell, Gerace, Leister and Sofer, 1975, Genetics 79: 73-83). ADH may play a metabolic role independent of alcohol detoxication, i.e. in the metabolism of higher alcohols (see Winberg, Thatcher and McKinley-McKee, 1982, Biochem. Biophys. Acta 704: 7-16). ADH also catalyses the oxidation of acetaldehyde to acetate (Heinstra, Eisses, Schoonen, Aben, de Winter, van de Horst, van Marrewijk, Beenakkers, Scharloo and Thorig, 1983, Genetica 60: 129-37; Moxon, Holmes, Parsons, Irving, and Doddrell, 1985, Comp. Biochem. Physiol. 80B: 525-35). Specific activity of ADH changes with development, with peaks at the end of the third larval instar and about four days after eclosion (Ursprung, Sofer and Burroughs, 1970, Wilhelm Roux's Arch. Entwicklungsmech. Org. 164: 201-08; Dunn, Wilson and Jacobson, 1969, J. Exp. Zool. 171: 185-90; Leibenguth, Rammo and Dubiczky, 1979, Wilhelm Roux's Arch. Dev. Biol. 187: 81-88; Maroni and Stamey, 1983, DIS 59: 77-79; Anderson and McDonald, 1981, Canad. J. Genet. Cytol. 23: 305-13). Most of the activity is in the larval fat body and gut and the adult fat body (Ursprung, Sofer and Burroughs). Maternal inheritance of ADH by embryos and larvae (O'Donnell et al.; Leibenguth et al.). Half life of ADH-F in vivo estimated as 55.3 hours (Anderson and McDonald, 1981, Biochem. Genet. 19: 411-19). Not expressed in SL2 tissue culture cells, but transfected cloned gene is (Benyajati and Dray, 1984, Proc. Nat. Acad. Sci. 1701-05). Ethanol tolerance usually correlated with ADH activity and polymorphic experimental populations exposed to ethanol usually show an increase in the frequency AdhF (McDonald and Avise, 1976, Biochem. Genet. 14: 347-55; Cavener and Clegg, 1978, Genetics 90: 629-44; van Delden, Kamping and van Dijk, 1975, Experientia 31: 418-19; Oakeshott, Gibson, Anderson and Champ, 1980, Aust. J. Biol. Sci. 33: 105-14; McDonald, Chambers, David and Ayala, 1977, Proc. Nat. Acad. Sci. USA 74: 4562-66). Flies carrying AdhF tend to be more resistant than those carrying only AdhS to ethanol [Kamping and van Delden, 1978, Biochem. Genet. 16: 541-55; Ainsley and Kitto, 1975, Isozymes (C. Markert, ed.). Academic Press, Vol. II, pp. 733-43; Briscoe, Robertson and Malpica, 1975, Nature (London) 253: 148-49]. Electrophoresis of homozygous genotypes usually reveals three interconvertable isozymes [Ursprung and Leone; Johnson and Denniston; Grell et al., 1965; Ursprung and Carlin, 1968, Ann. N.Y. Acad. Sci. 151: 456-75; Jacobson, Murphy and Hartmann, 1970, J. Biol. Chem. 245: 1075-83; Jacobson and Pfuderer, 1970, J. Biol. Chem. 245: 3938-44; Jacobson, Murphy and Ortiz, 1972, Arch. Biochem. Biophys. 149: 22-35; Knopp and Jacobson, 1972, Arch. Biochem. Biophys. 149: 36-41; Schwartz, Gerace, O'Donnell and Sofer, 1975, Isoenzymes (C. Markert, ed.). Academic Press, Vol. I, pp. 725-51]. These vary in activity and stability, the most cathodal being more active, but less stable, than the more anodal forms. They probably result from the binding of 0, 1 or 2 moles per mole of a NAD+ addition complex with a carbonyl compound [Schwartz and Sofer, 1976, Nature (London) 263: 129-31; Schwartz, O'Donnell and Sofer, 1979, Arch. Biochem. Biophys. 194: 365-78; Winberg, Thatcher and McKinley-McKee, 1983, Biochem. Genet. 21: 63-80]. Feeding flies acetone, propan-2-ol, or 3-hydroxy-butanone, for example, converts isozymes to most anodal form and results in loss of enzyme activity in vitro and in vivo (Schwartz and Sofer, 1976; Papel, Henderson, van Herrewege, David and Sofer, 1979, Biochem. Genet. 17: 533-63). ADH has been purified (Sofer and Ursprung, 1968, J. Biol. Chem. 243: 3118-25; Schwartz et al., 1975; Thatcher, 1977, Biochem. J. 163: 317-23; Leigh Brown and Lee, 1979, Biochem. J. 179: 479-82; Juan and Gonzalez-Duarte, 1980, Biochem. J. 189: 105-10; Elliot and Knopp, 1975, Methods Enzymol. 41: 374-79; Chambers, 1984, Biochem. Genet. 22: 529-50). It is a homodimer with monomeric subunit molecular weight of 27500 daltons (Thatcher, 1980, Biochem. J. 187: 875-83); molecular extinction coefficient 4.8 X 104 liter/mol/cm (Juan and Gonzalez-Duarte, for ADH-S). Complete amino acid sequence determined by Thatcher (1980; see also Schwartz and Jornvall, 1976, Europ. J. Biochem. 68: 159-68; Auffret, Williams and Thatcher, 1978, FEBS Lett. 90: 324-26; Benyajati, Place, Powers, and Sofer, 1981, Proc. Nat. Acad. Sci. USA 78: 2317-21; Chambers, Laver, Campbell and Gibson, 1981, Proc. Nat. Acad. Sci. USA 78: 3103-07) with secondary structure predictions (Thatcher and Sawyer, 1980, Biochem J. 187: 884-86; Benyajati et al., 1981). Limited homology in supposed catalytic region with ribitol dehydrogenase of Klebsiella (Jornvall, Persson and Jeffry, 1981, Proc. Nat. Acad. Sci. USA 78: 4226-30). ADH shows a broad substrate specificity but is more active (by at least a factor of 5) with secondary than primary alcohols and shows highest activity to 3-6 carbon alcohols (Sofer and Ursprung; Thatcher and Camfield, 1977, Winberg et al., 1982, Chambers et al.). Differences in substrate specificity, kinetic constants and stability of different electrophoretic variants often reported (Anderson and McDonald, 1983, Proc. Nat. Acad. Sci. USA 80: 4798-802). Considerable heterogeneity in the specific activity of ADH within and between different AdhF and AdhS strains, though AdhS strains tend to be lower than AdhF [Day, Hillier and Clarke, 1974, Biochem. Genet. 11: 141-53, 155-65; Day and Needham, 1974, Biochem. Genet. 11: 167-75; Gibson, 1970, Nature (London) 227: 959-61; Gibson, Chambers, Wilkes and Oakeshott, 1980, Aust. J. Biol. Sci. 33: 479-89; Gibson and Miklovitch, 1971, Experientia 27: 99-100; Kreitman, 1980, Genetics 95: 467-75; Oakeshott, 1976, Aust. J. Biol. Sci. 29: 365-73; Sampsell, 1977, Biochem. Genet. 15: 971-88; Sampsell and Sims, 1982, Nature (London) 296: 853-55; Thorig, Schoone and Scharloo, 1975; Biochem. Genet. 13: 721-31; Vigue and Johnson; Hewitt, Pipkin, Williams and Chakrabartty, 1974, J. Hered. 65: 141-44; Ward, 1974, Biochem. Genet. 12: 449-58; Ward, 1975, Genet. Res. 26: 81-93; Maroni, Laurie-Ahlberg, Adams and Wilton, 1982, Genetics 101: 431-66; Rasmuson, Nilson and Zeppezauer, 1966, Hereditas 56: 313-16; Clarke, Camfield, Garvin and Pitts, 1979, Nature (London) 180: 517-18; Laurie-Ahlberg, Maroni, Bewley, Lucchesi and Weil, 1980, Proc. Nat. Acad. Sci. USA 77: 1073-77; Barnes and Birley, 1978, Heredity 40: 51-57; Barnes and Birley, 1978, Biochem. Genet. 16: 155-65; McDonald and Ayala, 1978, Genetics 89: 371-88; McDonald et al., 1980; Lewis and Gibson, 1978, Biochem. Genet. 16: 159-70]. With the exception of the studies by Thatcher and Sheik (1981, Biochem. J. 197: 111-17), Winberg et al. (1982), McDonald, Anderson and Santos (1980, Genetics 95: 1013-22); Eisses, Schoonen, Aben, Scharloo, and Thorig (1985, Mol. Gen. Genet. 199: 76-81) and Moxon et al. (1985), these were all done with crude extracts and not purified enzyme. Thatcher and Sheikh find the relative thermostabilities to be ADH-S > ADH-F > ADH-n5 > ADH-D. ADH-S shows slower dissociation of NADH from NADN-enzyme complex than ADH-F (Winberg, Hovik, and McKinley-McKee, 1985, Biochem. Genet. 23: 205-16). ADH is not a metalloenzyme (Place, Powers and Sofer, 1980, Fed. Proc. 39: 1640); but, paradoxically, is inhibited by certain metal ion chelators, e.g. pyrazole (Place, Powers and Sofer; Winberg et al., 1982; Moxon et al., 1985). Utilization of ethanol as an energy source (van Herrewege and David, 1974, C. Rend. Acad. Sci. Paris 279D: 335-38; van Herrewege, David and Grantham, 1980, Experientia 36: 846-47; Libion-Mannaert, Delcour, Deltombe-Lietaert, Lenelle-Montfort and Elens, 1976, Experentia 32: 22-23) depends on ADH activity (David, Bocquet, van Herrewege, Fouillet and Arens, 1978, Biochem. Genet. 16: 203-11). AdhF homozygotes usually show a better ability to survive on ethanol as a sole energy source than AdhS homozygotes (Daly and Clarke, 1981, Heredity 46: 219-26; Anderson, McDonald and Santos, 1981, Experientia 37: 463-64). AdhF and AdhS homozygotes also show behavioural differences in their response to ethanol (Parsons, 1977 Oecologia 30: 141-46; Cavener, 1979, Behav. Genet. 9: 359-65; Gelan and McDonald, 1980, Behav. Genet. 10: 237-49; Hougonto, Lietaert, Libion-Mannaert, Feytmans and Elens, 1982, Genetica 58: 121-28; Parsons, 1980, Behav. Genet. 10: 183-90; Parsons, 1980, Experientia 36: 1070-71). D. simulans enzyme monomers form heterodimers with those of D. melanogaster (E.H. Grell); D. simulans enzyme purified (Juan and Gonzalez-Duarte, 1981, Biochem. J. 195: 61-69). Sequence of D. simulans ADH (from DNA) similar to that of AdhS with following changes: ser1 -> ala1; gln82 -> lys82; ile184 -> val184 (Bodmer and Ashburner, 1984, Nature 309: 425-30). D. simulans and D. melanogaster enzymes differentially regulated in hybrids (Dickenson, Rowan, and Brennan, 1984, Heredity 52: 215-25). The Adh genes from D. orena and D. mauritiana have also been sequenced (Bodmer and Ashburner), and those of D. erecta, D. teissieri and D. yakuba mapped with restriction enzymes (Langley, Montgomery and Quattlebaum, 1982, Proc. Nat. Acad. Sci. USA 79: 5631-35).
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
35B3-35B3  
Limits computationally determined from genome sequence between P{EP}elBEP2039&P{PZ}osprJ571 and P{lacW}Su(H)k07904  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
35B-35B
(determined by in situ hybridisation)  
35B-35B
(determined by in situ hybridisation)  
35B3-35B3
(determined by in situ hybridisation)  
35B3-35B5
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Maps to the left of Tp(2;2)Sco. Extremely close to Tp(2;2)Sco.
Maps 0.12cM to the left of Tp(2;2)Sco.
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
In direction of increasing cytology: osp- Adh+ Adhr+ osp-
In direction of increasing cytology: osp- Adh+ Adhr+ BG:DS09219.1- BG:DS07721.1+ osp-
In direction of increasing cytology: osp- Adh+ osp-
In direction of increasing cytology: Adh+ Adhr+
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\Adh for information on other features
detailed view FBtr0006151 FBtr0100589 FBtr0100594 FBtr0100591 FBtr0100590 FBtr0100593 FBtr0100187 FBtr0089866 FBtr0089865 FBtr0114465 FBpp0100047 FBpp0100048 FBpp0100045 FBpp0100050 FBpp0100051 FBpp0099544 FBpp0099545 FBpp0088804 FBpp0088805 FBpp0112957 FBti0015071 FBti0051096 FBti0014084 FBti0057324 FBti0025816 FBti0018409 FBti0023167 FBti0056239
Comments on Gene Model
gene_with_dicistronic_processed_transcript ; SO:0000722
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0100589
  1071
  256
FBtr0100590
  1016
  256
FBtr0100591
  2077
  256
FBtr0100593
  2022
  256
FBtr0100594
  1245
  256
Additional Transcript Data & Comments
Reported size (kB)
1.5 (northern blot)
0.760 (sequence analysis)
1.150 (northern blot)
1.0 (northern blot)
1.120 (northern blot)
Comments
The Adh distal and proximal transcripts accumulate in the same cells at some stages.
The longer Adh+R transcripts (ranging from 1150 to 2000 base pairs) are specifically detected in RNA from adult tissue. These longer RNAs are due to the use of an alternative promoter in adult flies.
The size of the Adh transcript reported in this paper is less than 1.8 kb by nothern blot analysis and is approximately 1.1 kb, but the exact size is not stated. One Adh transcript is detected by a 2.7 kb probe which contains the entire Adh region.
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
Adh-PC  
FBpp0100045  
27.7  
256  
7.57  
Adh-PE  
FBpp0100047  
27.7  
256  
7.57  
Adh-PF  
FBpp0100048  
27.7  
256  
7.57  
Adh-PH  
FBpp0100050  
27.7  
256  
7.57  
Adh-PI  
FBpp0100051  
27.7  
256  
7.57  
Additional Polypeptide Data & Comments
Reported size (kD)
Comments
In vitro transcribed protein from a genomic Adh clone (gAC1 and sAC1) which was bound by an immobilized Adh antibody was run on a gel to show one protein product with an approximate size of 24kD. No Adh protein was recovered from an Actin clone or without the addition of DNA.
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
TRANSFAC - Eukaryotic transcription factors, their genomic binding sites, and DNA-binding profiles
  • R00053
  • R00054
  • R00055
  • R00056
  • R00057
  • R00058
  • R00059
  • R00060
  • R00061
  • R00062
  • R00063
  • R00064
  • R00065
  • R00066
  • R00067
  • R00068
  • R01952
  • R01955
  • R01956
  • R01959
  • R01960
  • R01963
  • R01964
  • R01968
  • R01969
  • R01972
  • R01973
  • R01976
  • R01977
  • R01978
  • R01981
  • R01984
  • R01985
  • R04280
  • R04281
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
    Maps to
    Does NOT map to
    Identified with
    hide Mapped Features & Mutations
    Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
    Type
    Symbol & Location
    Additional Notes
    References
    deletion
    comment=Reported as a deletion from amino acids 75 to 86; annotated endpoints approximate.
    evidence=experimental
    deletion
    comment=Reported as a deletion from amino acids 184 to 190; annotated endpoints approximate.
    evidence=experimental
    deletion
    comment=Reported as a deletion from amino acids 191 to 196; annotated endpoints approximate.
    evidence=experimental
    point mutation
    comment=Mutation of the start codon; induced on an Adh[F] chromosome.
    evidence=experimental
    na_change=A14616339T
    pr_change=M1L|Adh-PC,M1L|Adh-PI,M1L|Adh-PH,M1L|Adh-PF,M1 L|Adh-PE
    reported_na_change=A778T
    point mutation
    comment=Mutation of the start codon; induced on an Adh[F] chromosome.
    evidence=experimental
    na_change=G14616341A
    pr_change=M1I|Adh-PC,M1I|Adh-PI,M1I|Adh-PH,M1I|Adh-PF,M1 I|Adh-PE
    reported_na_change=G780A
    point mutation
    comment=Mutation in the start codon.
    evidence=experimental
    na_change=G14616341A
    pr_change=M1I|Adh-PC,M1I|Adh-PI,M1I|Adh-PH,M1I|Adh-PF,M1 I|Adh-PE
    reported_na_change=G3A
    point mutation
    evidence=experimental
    na_change=C14616379T
    pr_change=A14V|Adh-PC,A14V|Adh-PI,A14V|Adh-PH,A14V|Adh-P F,A14V|Adh-PE
    reported_na_change=C41T
    reported_pr_change=A14V
    point mutation
    comment=Induced on an Adh[F]@ chromosome.
    evidence=experimental
    na_change=G14616382A
    pr_change=G15D|Adh-PC,G15D|Adh-PI,G15D|Adh-PH,G15D|Adh-P F,G15D|Adh-PE
    reported_na_change=G821A
    reported_pr_change=G15D
    point mutation
    comment=Induced on an Adh[F] chromosome.
    evidence=experimental
    na_change=G14616387A
    pr_change=G17R|Adh-PC,G17R|Adh-PI,G17R|Adh-PH,G17R|Adh-P F,G17R|Adh-PE
    reported_na_change=G826A
    reported_pr_change=G17R
    point mutation
    evidence=experimental
    na_change=G14616387A
    pr_change=G17R|Adh-PC,G17R|Adh-PI,G17R|Adh-PH,G17R|Adh-P F,G17R|Adh-PE
    reported_na_change=G49A
    reported_pr_change=G17R
    point mutation
    evidence=experimental
    na_change=G14616388A
    pr_change=G17E|Adh-PC,G17E|Adh-PI,G17E|Adh-PH,G17E|Adh-P F,G17E|Adh-PE
    reported_na_change=G50A
    reported_pr_change=G17E
    point mutation
    comment=Splice donor mutation
    evidence=experimental
    na_change=G14616438A
    reported_na_change=G?A
    point mutation
    evidence=experimental
    na_change=T14616595A
    pr_change=Y64|Adh-PC,Y64|Adh-PI,Y64|Adh-PH,Y64|Adh-P F,Y64@|Adh-PE
    reported_na_change=T?A
    reported_pr_change=Y64@
    point mutation
    evidence=experimental
    na_change=C14616650T
    pr_change=Q83|Adh-PC,Q83|Adh-PI,Q83|Adh-PH,Q83|Adh-P F,Q83@|Adh-PE
    reported_na_change=C312T
    reported_pr_change=Q83@
    point mutation
    Adh[G93R]<