A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\RpLP0

General Information
SymbolDmel\RpLP0SpeciesD. melanogaster
NameRibosomal protein LP0Annotation symbolCG7490
Feature typeprotein_coding_geneFlyBase IDFBgn0000100
Gene Model StatusCurrent Stock availability 10 publicly available
Also Known AsRpP0, AP3, PO, P0
Genomic Location
Chromosome (arm)3LRecombination map
Cytogenetic map79B2-79B2Sequence location3L:22,068,967..22,070,587 [+]

Genomic Maps

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Automatically generated summary

See sections below for more information
The gene Ribosomal protein LP0 is referred to in FlyBase by the symbol Dmel\RpLP0 (CG7490, FBgn0000100). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: structural constituent of ribosome. Based on sequence similarity, it is predicted to be involved in the biological process: translation. 12 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Ribosomal protein 60S; Ribosomal protein L10/acidic P0. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, during early larval stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1637546_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of RpLP0. Gene sequence location is 3L:22068967..22070587.

User Contributed Data
hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
Ape: Apurinic endonuclease
Encodes an apurinic-apyrimidinic DNA endonuclease, AP3. Biochemical studies by Spiering and Deutsch (1986, J. Biol. Chem. 261: 3222-28).
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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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FB2013_03
FB2013_02
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
79B2-79B2  
Limits computationally determined from genome sequence between P{lacW}l(3)j1B10j1B10 and P{lacW}l(3)j2C4j2C4  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
79D1-79D2  
(determined by in situ hybridisation)  
79D1-79D2  
(determined by in situ hybridisation)  
79C-79D  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
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Please see the GBrowse view of Dmel\RpLP0 for information on other features GBrowse View Help
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0078485 FBtr0078484 FBtr0334113 FBtr0078481 FBpp0078138 FBpp0078137 FBpp0078134 FBpp0306232 FBti0033714 FBti0027375 FBti0052491 FBti0125859_2 FBti0125859_1 FBti0109711 FBti0056892 FBti0034820 FBti0112562 FBti0074794 FBti0029129 FBti0005432 FBti0045592
Comments on Gene Model
Gene model reviewed during 5.46
Low-frequency RNA-Seq exon junction(s) not annotated.
Annotated transcripts do not represent all supported alternative splices within 5' UTR.
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0078481
  1211
  317
FBtr0334113
  1328
  317
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0078134  
34.2  
317  
6.95  
FBpp0306232  
34.2  
317  
6.95  
Additional Polypeptide Data & Comments
Reported size (kDa)
317 (aa); 34 (kD)
Comments
Contains CKI and CKII phosphorylation sites.
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
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Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term
References
inferred from direct assay
hide Expression Deduced from Reporters
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)


   Styles
   Scales

Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 2951.675
Larval Midgut
 
 4502.4
Larval Hindgut
 
 4562.7
Larval Malpighian Tubules
 
 4869.2
Larval Fat Body
 
 8487.6
Larval Salivary Gland
 
 7889.2
Larval Trachea
 
 6413
Larval Carcass
 
 4853.6
Adult Head
 
 4712.6
Adult Eye
 
 5523.825
Adult Brain
 
 3008.3
Adult Thoracic-Abdominal Ganglion
 
 3891.2
Adult Crop
 
 6556.4
Adult Midgut
 
 5077.5
Adult Hindgut
 
 5280
Adult Malpighian Tubules
 
 5919.8
Adult Fat Body
 
 6184.7
Adult Salivary Gland
 
 9254.5
Adult Heart
 
 6325
Adult VirginFemale Spermatheca
 
 6116.8
Adult InseminatedFemale Spermatheca
 
 6418.4
Adult Ovary
 
 3672.1
Adult Testis
 
 1022
Adult Male Accessory Gland
 
 9187.4
Adult Carcass
 
 5674.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (2951.675)
Larval Midgut
 (4502.4)
Larval Hindgut
 (4562.7)
Larval Malpighian Tubules
 (4869.2)
Larval Fat Body
 (8487.6)
Larval Salivary Gland
 (7889.2)
Larval Trachea
 (6413)
Larval Carcass
 (4853.6)
Adult Head
 (4712.6)
Adult Eye
 (5523.825)
Adult Brain
 (3008.3)
Adult Thoracic-Abdominal Ganglion
 (3891.2)
Adult Crop
 (6556.4)
Adult Midgut
 (5077.5)
Adult Hindgut
 (5280)
Adult Malpighian Tubules
 (5919.8)
Adult Fat Body
 (6184.7)
Adult Salivary Gland
 (9254.5)
Adult Heart
 (6325)
Adult VirginFemale Spermatheca
 (6116.8)
Adult InseminatedFemale Spermatheca
 (6418.4)
Adult Ovary
 (3672.1)
Adult Testis
 (1022)
Adult Male Accessory Gland
 (9187.4)
Adult Carcass
 (5674.3)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 (2951.675)
Larval Midgut
 (4502.4)
Larval Hindgut
 (4562.7)
Larval Malpighian Tubules
 (4869.2)
Larval Fat Body
 (8487.6)
Larval Salivary Gland
 (7889.2)
Larval Trachea
 (6413)
Larval Carcass
 (4853.6)
Adult Head
 (4712.6)
Adult Eye
 (5523.825)
Adult Brain
 (3008.3)
Adult Thoracic-Abdominal Ganglion
 (3891.2)
Adult Crop
 (6556.4)
Adult Midgut
 (5077.5)
Adult Hindgut
 (5280)
Adult Malpighian Tubules
 (5919.8)
Adult Fat Body
 (6184.7)
Adult Salivary Gland
 (9254.5)
Adult Heart
 (6325)
Adult VirginFemale Spermatheca
 (6116.8)
Adult InseminatedFemale Spermatheca
 (6418.4)
Adult Ovary
 (3672.1)
Adult Testis
 1022
Adult Male Accessory Gland
 (9187.4)
Adult Carcass
 (5674.3)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 2951.675
Larval Midgut
 
 4502.4
Larval Hindgut
 
 4562.7
Larval Malpighian Tubules
 
 4869.2
Larval Fat Body
 
 8487.6
Larval Salivary Gland
 
 7889.2
Larval Trachea
 
 6413
Larval Carcass
 
 4853.6
Adult Head
 
 4712.6
Adult Eye
 
 5523.825
Adult Brain
 
 3008.3
Adult Thoracic-Abdominal Ganglion
 
 3891.2
Adult Crop
 
 6556.4
Adult Midgut
 
 5077.5
Adult Hindgut
 
 5280
Adult Malpighian Tubules
 
 5919.8
Adult Fat Body
 
 6184.7
Adult Salivary Gland
 
 9254.5
Adult Heart
 
 6325
Adult VirginFemale Spermatheca
 
 6116.8
Adult InseminatedFemale Spermatheca
 
 6418.4
Adult Ovary
 
 3672.1
Adult Testis
 
 1022
Adult Male Accessory Gland
 
 9187.4
Adult Carcass
 
 5674.3
Expression Level Scale
 Very high 
log, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 2951.675
Larval Midgut
 
 4502.4
Larval Hindgut
 
 4562.7
Larval Malpighian Tubules
 
 4869.2
Larval Fat Body
 
 8487.6
Larval Salivary Gland
 
 7889.2
Larval Trachea
 
 6413
Larval Carcass
 
 4853.6
Adult Head
 
 4712.6
Adult Eye
 
 5523.825
Adult Brain
 
 3008.3
Adult Thoracic-Abdominal Ganglion
 
 3891.2
Adult Crop
 
 6556.4
Adult Midgut
 
 5077.5
Adult Hindgut
 
 5280
Adult Malpighian Tubules
 
 5919.8
Adult Fat Body
 
 6184.7
Adult Salivary Gland
 
 9254.5
Adult Heart
 
 6325
Adult VirginFemale Spermatheca
 
 6116.8
Adult InseminatedFemale Spermatheca
 
 6418.4
Adult Ovary
 
 3672.1
Adult Testis
 
 1022
Adult Male Accessory Gland
 
 9187.4
Adult Carcass
 
 5674.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (2951.675)
Larval Midgut
 (4502.4)
Larval Hindgut
 (4562.7)
Larval Malpighian Tubules
 (4869.2)
Larval Fat Body
 (8487.6)
Larval Salivary Gland
 (7889.2)
Larval Trachea
 (6413)
Larval Carcass
 (4853.6)
Adult Head
 (4712.6)
Adult Eye
 (5523.825)
Adult Brain
 (3008.3)
Adult Thoracic-Abdominal Ganglion
 (3891.2)
Adult Crop
 (6556.4)
Adult Midgut
 (5077.5)
Adult Hindgut
 (5280)
Adult Malpighian Tubules
 (5919.8)
Adult Fat Body
 (6184.7)
Adult Salivary Gland
 (9254.5)
Adult Heart
 (6325)
Adult VirginFemale Spermatheca
 (6116.8)
Adult InseminatedFemale Spermatheca
 (6418.4)
Adult Ovary
 (3672.1)
Adult Testis
 (1022)
Adult Male Accessory Gland
 (9187.4)
Adult Carcass
 (5674.3)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 (2951.675)
Larval Midgut
 (4502.4)
Larval Hindgut
 (4562.7)
Larval Malpighian Tubules
 (4869.2)
Larval Fat Body
 (8487.6)
Larval Salivary Gland
 (7889.2)
Larval Trachea
 (6413)
Larval Carcass
 (4853.6)
Adult Head
 (4712.6)
Adult Eye
 (5523.825)
Adult Brain
 (3008.3)
Adult Thoracic-Abdominal Ganglion
 (3891.2)
Adult Crop
 (6556.4)
Adult Midgut
 (5077.5)
Adult Hindgut
 (5280)
Adult Malpighian Tubules
 (5919.8)
Adult Fat Body
 (6184.7)
Adult Salivary Gland
 (9254.5)
Adult Heart
 (6325)
Adult VirginFemale Spermatheca
 (6116.8)
Adult InseminatedFemale Spermatheca
 (6418.4)
Adult Ovary
 (3672.1)
Adult Testis
 1022
Adult Male Accessory Gland
 (9187.4)
Adult Carcass
 (5674.3)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 2951.675
Larval Midgut
 
 4502.4
Larval Hindgut
 
 4562.7
Larval Malpighian Tubules
 
 4869.2
Larval Fat Body
 
 8487.6
Larval Salivary Gland
 
 7889.2
Larval Trachea
 
 6413
Larval Carcass
 
 4853.6
Adult Head
 
 4712.6
Adult Eye
 
 5523.825
Adult Brain
 
 3008.3
Adult Thoracic-Abdominal Ganglion
 
 3891.2
Adult Crop
 
 6556.4
Adult Midgut
 
 5077.5
Adult Hindgut
 
 5280
Adult Malpighian Tubules
 
 5919.8
Adult Fat Body
 
 6184.7
Adult Salivary Gland
 
 9254.5
Adult Heart
 
 6325
Adult VirginFemale Spermatheca
 
 6116.8
Adult InseminatedFemale Spermatheca
 
 6418.4
Adult Ovary
 
 3672.1
Adult Testis
 
 1022
Adult Male Accessory Gland
 
 9187.4
Adult Carcass
 
 5674.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 4712.6
 
NA 
Eye
 
 5523.825
 
NA 
Brain
 
 3008.3
 
2951.675 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 3891.2
 
NA 
Crop
 
 6556.4
 
4502.4 
Midgut
 
 5077.5
 
4562.7 
Hindgut
 
 5280
 
4869.2 
Malpighian Tubules
 
 5919.8
 
8487.6 
Fat Body
 
 6184.7
 
7889.2 
Salivary Gland
 
 9254.5
 
NA 
Heart
 
 6325
 
6413 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 6116.8
 
NA 
InseminatedFemale Spermatheca
 
 6418.4
 
NA 
Ovary
 
 3672.1
 
NA 
Testis
 
 1022
 
NA 
Male Accessory Gland
 
 9187.4
 
4853.6 
Carcass
 
 5674.3

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 1135
central nervous system, larvae L3
 
 574
central nervous system, pupae P8
 
 236
head, virgin 1-day female
 
 326
head, virgin 4-day female
 
 493
head, virgin 20-day female
 
 871
head, mated 1-day female
 
 287
head, mated 4-day female
 
 454
head, mated 20-day female
 
 675
head, mated 1-day male
 
 293
head, mated 4-day male
 
 330
head, mated 20-day male
 
 529
salivary gland, larvae L3 wandering
 
 307
salivary gland, white prepupae
 
 614
digestive system, larvae L3 wandering
 
 461
digestive system, 1-day adult
 
 552
digestive system, 4-day adult
 
 477
digestive system, 20-day adult
 
 567
fat body, larvae L3 wandering
 
 377
fat body, white prepupae
 
 253
fat body, pupae P8
 
 438
carcass, larvae L3 wandering
 
 750
carcass, 1-day adult
 
 307
carcass, 4-day adult
 
 380
carcass, 20-day adult
 
 619
ovary, virgin 4-day female
 
 406
ovary, mated 4-day female
 
 379
testis, mated 4-day male
 
 306
accessory gland, mated 4-day male
 
 718
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Linear, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (1135)
central nervous system, larvae L3
 (574)
central nervous system, pupae P8
 (236)
head, virgin 1-day female
 (326)
head, virgin 4-day female
 (493)
head, virgin 20-day female
 (871)
head, mated 1-day female
 (287)
head, mated 4-day female
 (454)
head, mated 20-day female
 (675)
head, mated 1-day male
 (293)
head, mated 4-day male
 (330)
head, mated 20-day male
 (529)
salivary gland, larvae L3 wandering
 (307)
salivary gland, white prepupae
 (614)
digestive system, larvae L3 wandering
 (461)
digestive system, 1-day adult
 (552)
digestive system, 4-day adult
 (477)
digestive system, 20-day adult
 (567)
fat body, larvae L3 wandering
 (377)
fat body, white prepupae
 (253)
fat body, pupae P8
 (438)
carcass, larvae L3 wandering
 (750)
carcass, 1-day adult
 (307)
carcass, 4-day adult
 (380)
carcass, 20-day adult
 (619)
ovary, virgin 4-day female
 (406)
ovary, mated 4-day female
 (379)
testis, mated 4-day male
 (306)
accessory gland, mated 4-day male
 (718)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (1135)
central nervous system, larvae L3
 (574)
central nervous system, pupae P8
 (236)
head, virgin 1-day female
 (326)
head, virgin 4-day female
 (493)
head, virgin 20-day female
 (871)
head, mated 1-day female
 (287)
head, mated 4-day female
 (454)
head, mated 20-day female
 (675)
head, mated 1-day male
 (293)
head, mated 4-day male
 (330)
head, mated 20-day male
 (529)
salivary gland, larvae L3 wandering
 (307)
salivary gland, white prepupae
 (614)
digestive system, larvae L3 wandering
 (461)
digestive system, 1-day adult
 (552)
digestive system, 4-day adult
 (477)
digestive system, 20-day adult
 (567)
fat body, larvae L3 wandering
 (377)
fat body, white prepupae
 (253)
fat body, pupae P8
 (438)
carcass, larvae L3 wandering
 (750)
carcass, 1-day adult
 (307)
carcass, 4-day adult
 (380)
carcass, 20-day adult
 (619)
ovary, virgin 4-day female
 (406)
ovary, mated 4-day female
 (379)
testis, mated 4-day male
 (306)
accessory gland, mated 4-day male
 (718)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 1135
central nervous system, larvae L3
 
 574
central nervous system, pupae P8
 
 236
head, virgin 1-day female
 
 326
head, virgin 4-day female
 
 493
head, virgin 20-day female
 
 871
head, mated 1-day female
 
 287
head, mated 4-day female
 
 454
head, mated 20-day female
 
 675
head, mated 1-day male
 
 293
head, mated 4-day male
 
 330
head, mated 20-day male
 
 529
salivary gland, larvae L3 wandering
 
 307
salivary gland, white prepupae
 
 614
digestive system, larvae L3 wandering
 
 461
digestive system, 1-day adult
 
 552
digestive system, 4-day adult
 
 477
digestive system, 20-day adult
 
 567
fat body, larvae L3 wandering
 
 377
fat body, white prepupae
 
 253
fat body, pupae P8
 
 438
carcass, larvae L3 wandering
 
 750
carcass, 1-day adult
 
 307
carcass, 4-day adult
 
 380
carcass, 20-day adult
 
 619
ovary, virgin 4-day female
 
 406
ovary, mated 4-day female
 
 379
testis, mated 4-day male
 
 306
accessory gland, mated 4-day male
 
 718
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 1135
central nervous system, larvae L3
 
 574
central nervous system, pupae P8
 
 236
head, virgin 1-day female
 
 326
head, virgin 4-day female
 
 493
head, virgin 20-day female
 
 871
head, mated 1-day female
 
 287
head, mated 4-day female
 
 454
head, mated 20-day female
 
 675
head, mated 1-day male
 
 293
head, mated 4-day male
 
 330
head, mated 20-day male
 
 529
salivary gland, larvae L3 wandering
 
 307
salivary gland, white prepupae
 
 614
digestive system, larvae L3 wandering
 
 461
digestive system, 1-day adult
 
 552
digestive system, 4-day adult
 
 477
digestive system, 20-day adult
 
 567
fat body, larvae L3 wandering
 
 377
fat body, white prepupae
 
 253
fat body, pupae P8
 
 438
carcass, larvae L3 wandering
 
 750
carcass, 1-day adult
 
 307
carcass, 4-day adult
 
 380
carcass, 20-day adult
 
 619
ovary, virgin 4-day female
 
 406
ovary, mated 4-day female
 
 379
testis, mated 4-day male
 
 306
accessory gland, mated 4-day male
 
 718
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (1135)
central nervous system, larvae L3
 (574)
central nervous system, pupae P8
 (236)
head, virgin 1-day female
 (326)
head, virgin 4-day female
 (493)
head, virgin 20-day female
 (871)
head, mated 1-day female
 (287)
head, mated 4-day female
 (454)
head, mated 20-day female
 (675)
head, mated 1-day male
 (293)
head, mated 4-day male
 (330)
head, mated 20-day male
 (529)
salivary gland, larvae L3 wandering
 (307)
salivary gland, white prepupae
 (614)
digestive system, larvae L3 wandering
 (461)
digestive system, 1-day adult
 (552)
digestive system, 4-day adult
 (477)
digestive system, 20-day adult
 (567)
fat body, larvae L3 wandering
 (377)
fat body, white prepupae
 (253)
fat body, pupae P8
 (438)
carcass, larvae L3 wandering
 (750)
carcass, 1-day adult
 (307)
carcass, 4-day adult
 (380)
carcass, 20-day adult
 (619)
ovary, virgin 4-day female
 (406)
ovary, mated 4-day female
 (379)
testis, mated 4-day male
 (306)
accessory gland, mated 4-day male
 (718)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (1135)
central nervous system, larvae L3
 (574)
central nervous system, pupae P8
 (236)
head, virgin 1-day female
 (326)
head, virgin 4-day female
 (493)
head, virgin 20-day female
 (871)
head, mated 1-day female
 (287)
head, mated 4-day female
 (454)
head, mated 20-day female
 (675)
head, mated 1-day male
 (293)
head, mated 4-day male
 (330)
head, mated 20-day male
 (529)
salivary gland, larvae L3 wandering
 (307)
salivary gland, white prepupae
 (614)
digestive system, larvae L3 wandering
 (461)
digestive system, 1-day adult
 (552)
digestive system, 4-day adult
 (477)
digestive system, 20-day adult
 (567)
fat body, larvae L3 wandering
 (377)
fat body, white prepupae
 (253)
fat body, pupae P8
 (438)
carcass, larvae L3 wandering
 (750)
carcass, 1-day adult
 (307)
carcass, 4-day adult
 (380)
carcass, 20-day adult
 (619)
ovary, virgin 4-day female
 (406)
ovary, mated 4-day female
 (379)
testis, mated 4-day male
 (306)
accessory gland, mated 4-day male
 (718)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 1135
central nervous system, larvae L3
 
 574
central nervous system, pupae P8
 
 236
head, virgin 1-day female
 
 326
head, virgin 4-day female
 
 493
head, virgin 20-day female
 
 871
head, mated 1-day female
 
 287
head, mated 4-day female
 
 454
head, mated 20-day female
 
 675
head, mated 1-day male
 
 293
head, mated 4-day male
 
 330
head, mated 20-day male
 
 529
salivary gland, larvae L3 wandering
 
 307
salivary gland, white prepupae
 
 614
digestive system, larvae L3 wandering
 
 461
digestive system, 1-day adult
 
 552
digestive system, 4-day adult
 
 477
digestive system, 20-day adult
 
 567
fat body, larvae L3 wandering
 
 377
fat body, white prepupae
 
 253
fat body, pupae P8
 
 438
carcass, larvae L3 wandering
 
 750
carcass, 1-day adult
 
 307
carcass, 4-day adult
 
 380
carcass, 20-day adult
 
 619
ovary, virgin 4-day female
 
 406
ovary, mated 4-day female
 
 379
testis, mated 4-day male
 
 306
accessory gland, mated 4-day male
 
 718
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 
central nervous system, larvae L3
 
 
central nervous system, pupae P8
 
 
head, virgin 1-day female
 
 
head, virgin 4-day female
 
 
head, virgin 20-day female
 
 
head, mated 1-day female
 
 
head, mated 4-day female
 
 
head, mated 20-day female
 
 
head, mated 1-day male
 
 
head, mated 4-day male
 
 
head, mated 20-day male
 
 
salivary gland, larvae L3 wandering
 
 
salivary gland, white prepupae
 
 
digestive system, larvae L3 wandering
 
 
digestive system, 1-day adult
 
 
digestive system, 4-day adult
 
 
digestive system, 20-day adult
 
 
fat body, larvae L3 wandering
 
 
fat body, white prepupae
 
 
fat body, pupae P8
 
 
carcass, larvae L3 wandering
 
 
carcass, 1-day adult
 
 
carcass, 4-day adult
 
 
carcass, 20-day adult
 
 
ovary, virgin 4-day female
 
 
ovary, mated 4-day female
 
 
testis, mated 4-day male
 
 
accessory gland, mated 4-day male
 
 

hide modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)


   Styles
   Scales

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, during early larval stages, in adult female stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 1160
embryo 02-04hr
 
 1691
embryo 04-06hr
 
 1393
embryo 06-08hr
 
 1287
embryo 08-10hr
 
 1416
embryo 10-12hr
 
 2012
embryo 12-14hr
 
 1110
embryo 14-16hr
 
 1540
embryo 16-18hr
 
 1337
embryo 18-20hr
 
 1570
embryo 20-22hr
 
 1621
embryo 22-24hr
 
 1367
larva L1
 
 2252
larva L2
 
 1986
larva L3 12hr old
 
 1680
larva L3 puffstage 1-2
 
 1237
larva L3 puffstage 3-6
 
 1153
larva L3 puffstage 7-9
 
 1108
white prepupae new
 
 968
white prepupae 12hr
 
 758
white prepupae 24hr
 
 818
pupae 2d postWPP
 
 745
pupae 3d postWPP
 
 647
pupae 4d postWPP
 
 701
adult male 01day
 
 589
adult male 05day
 
 653
adult male 30day
 
 711
adult female 01day
 
 1565
adult female 05day
 
 1482
adult female 30day
 
 1590
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (1160)
embryo 02-04hr
 (1691)
embryo 04-06hr
 (1393)
embryo 06-08hr
 (1287)
embryo 08-10hr
 (1416)
embryo 10-12hr
 (2012)
embryo 12-14hr
 (1110)
embryo 14-16hr
 (1540)
embryo 16-18hr
 (1337)
embryo 18-20hr
 (1570)
embryo 20-22hr
 (1621)
embryo 22-24hr
 (1367)
larva L1
 (2252)
larva L2
 (1986)
larva L3 12hr old
 (1680)
larva L3 puffstage 1-2
 (1237)
larva L3 puffstage 3-6
 (1153)
larva L3 puffstage 7-9
 (1108)
white prepupae new
 (968)
white prepupae 12hr
 (758)
white prepupae 24hr
 (818)
pupae 2d postWPP
 (745)
pupae 3d postWPP
 (647)
pupae 4d postWPP
 (701)
adult male 01day
 (589)
adult male 05day
 (653)
adult male 30day
 (711)
adult female 01day
 (1565)
adult female 05day
 (1482)
adult female 30day
 (1590)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 (1160)
embryo 02-04hr
 (1691)
embryo 04-06hr
 (1393)
embryo 06-08hr
 (1287)
embryo 08-10hr
 (1416)
embryo 10-12hr
 (2012)
embryo 12-14hr
 (1110)
embryo 14-16hr
 (1540)
embryo 16-18hr
 (1337)
embryo 18-20hr
 (1570)
embryo 20-22hr
 (1621)
embryo 22-24hr
 (1367)
larva L1
 (2252)
larva L2
 (1986)
larva L3 12hr old
 (1680)
larva L3 puffstage 1-2
 (1237)
larva L3 puffstage 3-6
 (1153)
larva L3 puffstage 7-9
 (1108)
white prepupae new
 (968)
white prepupae 12hr
 (758)
white prepupae 24hr
 (818)
pupae 2d postWPP
 (745)
pupae 3d postWPP
 (647)
pupae 4d postWPP
 (701)
adult male 01day
 (589)
adult male 05day
 (653)
adult male 30day
 (711)
adult female 01day
 (1565)
adult female 05day
 (1482)
adult female 30day
 (1590)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1160
embryo 02-04hr
 
 1691
embryo 04-06hr
 
 1393
embryo 06-08hr
 
 1287
embryo 08-10hr
 
 1416
embryo 10-12hr
 
 2012
embryo 12-14hr
 
 1110
embryo 14-16hr
 
 1540
embryo 16-18hr
 
 1337
embryo 18-20hr
 
 1570
embryo 20-22hr
 
 1621
embryo 22-24hr
 
 1367
larva L1
 
 2252
larva L2
 
 1986
larva L3 12hr old
 
 1680
larva L3 puffstage 1-2
 
 1237
larva L3 puffstage 3-6
 
 1153
larva L3 puffstage 7-9
 
 1108
white prepupae new
 
 968
white prepupae 12hr
 
 758
white prepupae 24hr
 
 818
pupae 2d postWPP
 
 745
pupae 3d postWPP
 
 647
pupae 4d postWPP
 
 701
adult male 01day
 
 589
adult male 05day
 
 653
adult male 30day
 
 711
adult female 01day
 
 1565
adult female 05day
 
 1482
adult female 30day
 
 1590
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 1160
embryo 02-04hr
 
 1691
embryo 04-06hr
 
 1393
embryo 06-08hr
 
 1287
embryo 08-10hr
 
 1416
embryo 10-12hr
 
 2012
embryo 12-14hr
 
 1110
embryo 14-16hr
 
 1540
embryo 16-18hr
 
 1337
embryo 18-20hr
 
 1570
embryo 20-22hr
 
 1621
embryo 22-24hr
 
 1367
larva L1
 
 2252
larva L2
 
 1986
larva L3 12hr old
 
 1680
larva L3 puffstage 1-2
 
 1237
larva L3 puffstage 3-6
 
 1153
larva L3 puffstage 7-9
 
 1108
white prepupae new
 
 968
white prepupae 12hr
 
 758
white prepupae 24hr
 
 818
pupae 2d postWPP
 
 745
pupae 3d postWPP
 
 647
pupae 4d postWPP
 
 701
adult male 01day
 
 589
adult male 05day
 
 653
adult male 30day
 
 711
adult female 01day
 
 1565
adult female 05day
 
 1482
adult female 30day
 
 1590
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (1160)
embryo 02-04hr
 (1691)
embryo 04-06hr
 (1393)
embryo 06-08hr
 (1287)
embryo 08-10hr
 (1416)
embryo 10-12hr
 (2012)
embryo 12-14hr
 (1110)
embryo 14-16hr
 (1540)
embryo 16-18hr
 (1337)
embryo 18-20hr
 (1570)
embryo 20-22hr
 (1621)
embryo 22-24hr
 (1367)
larva L1
 (2252)
larva L2
 (1986)
larva L3 12hr old
 (1680)
larva L3 puffstage 1-2
 (1237)
larva L3 puffstage 3-6
 (1153)
larva L3 puffstage 7-9
 (1108)
white prepupae new
 (968)
white prepupae 12hr
 (758)
white prepupae 24hr
 (818)
pupae 2d postWPP
 (745)
pupae 3d postWPP
 (647)
pupae 4d postWPP
 (701)
adult male 01day
 (589)
adult male 05day
 (653)
adult male 30day
 (711)
adult female 01day
 (1565)
adult female 05day
 (1482)
adult female 30day
 (1590)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 (1160)
embryo 02-04hr
 (1691)
embryo 04-06hr
 (1393)
embryo 06-08hr
 (1287)
embryo 08-10hr
 (1416)
embryo 10-12hr
 (2012)
embryo 12-14hr
 (1110)
embryo 14-16hr
 (1540)
embryo 16-18hr
 (1337)
embryo 18-20hr
 (1570)
embryo 20-22hr
 (1621)
embryo 22-24hr
 (1367)
larva L1
 (2252)
larva L2
 (1986)
larva L3 12hr old
 (1680)
larva L3 puffstage 1-2
 (1237)
larva L3 puffstage 3-6
 (1153)
larva L3 puffstage 7-9
 (1108)
white prepupae new
 (968)
white prepupae 12hr
 (758)
white prepupae 24hr
 (818)
pupae 2d postWPP
 (745)
pupae 3d postWPP
 (647)
pupae 4d postWPP
 (701)
adult male 01day
 (589)
adult male 05day
 (653)
adult male 30day
 (711)
adult female 01day
 (1565)
adult female 05day
 (1482)
adult female 30day
 (1590)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 1160
embryo 02-04hr
 
 1691
embryo 04-06hr
 
 1393
embryo 06-08hr
 
 1287
embryo 08-10hr
 
 1416
embryo 10-12hr
 
 2012
embryo 12-14hr
 
 1110
embryo 14-16hr
 
 1540
embryo 16-18hr
 
 1337
embryo 18-20hr
 
 1570
embryo 20-22hr
 
 1621
embryo 22-24hr
 
 1367
larva L1
 
 2252
larva L2
 
 1986
larva L3 12hr old
 
 1680
larva L3 puffstage 1-2
 
 1237
larva L3 puffstage 3-6
 
 1153
larva L3 puffstage 7-9
 
 1108
white prepupae new
 
 968
white prepupae 12hr
 
 758
white prepupae 24hr
 
 818
pupae 2d postWPP
 
 745
pupae 3d postWPP
 
 647
pupae 4d postWPP
 
 701
adult male 01day
 
 589
adult male 05day
 
 653
adult male 30day
 
 711
adult female 01day
 
 1565
adult female 05day
 
 1482
adult female 30day
 
 1590
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

modENCODE Temporal Expression Data (Graveley et al., 2011)
hide modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 1234
Schneider line 2 Sg4
 
 2060
embryonic 1182-4H
 
 998
embryonic GM2
 
 564
embryonic Kc167
 
 991
embryonic S1
 
 1060
embryonic S3
 
 1144
leg disc CME L1
 
 1342
wing disc CME-W2
 
 1033
wing disc ML-DmD8
 
 892
wing disc ML-DmD9
 
 1086
wing disc ML-DmD16-c3
 
 973
wing disc ML-DmD21
 
 2992
wing disc ML-DmD32
 
 998
haltere disc ML-DmD17-c3
 
 794
eye-antennal disc ML-DmD11
 
 1591
antennal disc ML-DmD20-c5
 
 1917
mixed discs ML-DmD4-c1
 
 1123
CNS ML-DmBG1-c1
 
 945
CNS ML-DmBG2-c2
 
 938
tumorous blood cells mbn2
 
 614
ovary fGS/OSS
 
 432
ovary OSC
 
 277
ovary OSS
 
 157
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Linear, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (1234)
Schneider line 2 Sg4
 (2060)
embryonic 1182-4H
 (998)
embryonic GM2
 (564)
embryonic Kc167
 (991)
embryonic S1
 (1060)
embryonic S3
 (1144)
leg disc CME L1
 (1342)
wing disc CME-W2
 (1033)
wing disc ML-DmD8
 (892)
wing disc ML-DmD9
 (1086)
wing disc ML-DmD16-c3
 (973)
wing disc ML-DmD21
 (2992)
wing disc ML-DmD32
 (998)
haltere disc ML-DmD17-c3
 (794)
eye-antennal disc ML-DmD11
 (1591)
antennal disc ML-DmD20-c5
 (1917)
mixed discs ML-DmD4-c1
 (1123)
CNS ML-DmBG1-c1
 (945)
CNS ML-DmBG2-c2
 (938)
tumorous blood cells mbn2
 (614)
ovary fGS/OSS
 (432)
ovary OSC
 (277)
ovary OSS
 (157)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (1234)
Schneider line 2 Sg4
 (2060)
embryonic 1182-4H
 (998)
embryonic GM2
 (564)
embryonic Kc167
 (991)
embryonic S1
 (1060)
embryonic S3
 (1144)
leg disc CME L1
 (1342)
wing disc CME-W2
 (1033)
wing disc ML-DmD8
 (892)
wing disc ML-DmD9
 (1086)
wing disc ML-DmD16-c3
 (973)
wing disc ML-DmD21
 (2992)
wing disc ML-DmD32
 (998)
haltere disc ML-DmD17-c3
 (794)
eye-antennal disc ML-DmD11
 (1591)
antennal disc ML-DmD20-c5
 (1917)
mixed discs ML-DmD4-c1
 (1123)
CNS ML-DmBG1-c1
 (945)
CNS ML-DmBG2-c2
 (938)
tumorous blood cells mbn2
 (614)
ovary fGS/OSS
 (432)
ovary OSC
 (277)
ovary OSS
 (157)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 1234
Schneider line 2 Sg4
 
 2060
embryonic 1182-4H
 
 998
embryonic GM2
 
 564
embryonic Kc167
 
 991
embryonic S1
 
 1060
embryonic S3
 
 1144
leg disc CME L1
 
 1342
wing disc CME-W2
 
 1033
wing disc ML-DmD8
 
 892
wing disc ML-DmD9
 
 1086
wing disc ML-DmD16-c3
 
 973
wing disc ML-DmD21
 
 2992
wing disc ML-DmD32
 
 998
haltere disc ML-DmD17-c3
 
 794
eye-antennal disc ML-DmD11
 
 1591
antennal disc ML-DmD20-c5
 
 1917
mixed discs ML-DmD4-c1
 
 1123
CNS ML-DmBG1-c1
 
 945
CNS ML-DmBG2-c2
 
 938
tumorous blood cells mbn2
 
 614
ovary fGS/OSS
 
 432
ovary OSC
 
 277
ovary OSS
 
 157
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 1234
Schneider line 2 Sg4
 
 2060
embryonic 1182-4H
 
 998
embryonic GM2
 
 564
embryonic Kc167
 
 991
embryonic S1
 
 1060
embryonic S3
 
 1144
leg disc CME L1
 
 1342
wing disc CME-W2
 
 1033
wing disc ML-DmD8
 
 892
wing disc ML-DmD9
 
 1086
wing disc ML-DmD16-c3
 
 973
wing disc ML-DmD21
 
 2992
wing disc ML-DmD32
 
 998
haltere disc ML-DmD17-c3
 
 794
eye-antennal disc ML-DmD11
 
 1591
antennal disc ML-DmD20-c5
 
 1917
mixed discs ML-DmD4-c1
 
 1123
CNS ML-DmBG1-c1
 
 945
CNS ML-DmBG2-c2
 
 938
tumorous blood cells mbn2
 
 614
ovary fGS/OSS
 
 432
ovary OSC
 
 277
ovary OSS
 
 157
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (1234)
Schneider line 2 Sg4
 (2060)
embryonic 1182-4H
 (998)
embryonic GM2
 (564)
embryonic Kc167
 (991)
embryonic S1
 (1060)
embryonic S3
 (1144)
leg disc CME L1
 (1342)
wing disc CME-W2
 (1033)
wing disc ML-DmD8
 (892)
wing disc ML-DmD9
 (1086)
wing disc ML-DmD16-c3
 (973)
wing disc ML-DmD21
 (2992)
wing disc ML-DmD32
 (998)
haltere disc ML-DmD17-c3
 (794)
eye-antennal disc ML-DmD11
 (1591)
antennal disc ML-DmD20-c5
 (1917)
mixed discs ML-DmD4-c1
 (1123)
CNS ML-DmBG1-c1
 (945)
CNS ML-DmBG2-c2
 (938)
tumorous blood cells mbn2
 (614)
ovary fGS/OSS
 (432)
ovary OSC
 (277)
ovary OSS
 (157)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (1234)
Schneider line 2 Sg4
 (2060)
embryonic 1182-4H
 (998)
embryonic GM2
 (564)
embryonic Kc167
 (991)
embryonic S1
 (1060)
embryonic S3
 (1144)
leg disc CME L1
 (1342)
wing disc CME-W2
 (1033)
wing disc ML-DmD8
 (892)
wing disc ML-DmD9
 (1086)
wing disc ML-DmD16-c3
 (973)
wing disc ML-DmD21
 (2992)
wing disc ML-DmD32
 (998)
haltere disc ML-DmD17-c3
 (794)
eye-antennal disc ML-DmD11
 (1591)
antennal disc ML-DmD20-c5
 (1917)
mixed discs ML-DmD4-c1
 (1123)
CNS ML-DmBG1-c1
 (945)
CNS ML-DmBG2-c2
 (938)
tumorous blood cells mbn2
 (614)
ovary fGS/OSS
 (432)
ovary OSC
 (277)
ovary OSS
 (157)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 1234
Schneider line 2 Sg4
 
 2060
embryonic 1182-4H
 
 998
embryonic GM2
 
 564
embryonic Kc167
 
 991
embryonic S1
 
 1060
embryonic S3
 
 1144
leg disc CME L1
 
 1342
wing disc CME-W2
 
 1033
wing disc ML-DmD8
 
 892
wing disc ML-DmD9
 
 1086
wing disc ML-DmD16-c3
 
 973
wing disc ML-DmD21
 
 2992
wing disc ML-DmD32
 
 998
haltere disc ML-DmD17-c3
 
 794
eye-antennal disc ML-DmD11
 
 1591
antennal disc ML-DmD20-c5
 
 1917
mixed discs ML-DmD4-c1
 
 1123
CNS ML-DmBG1-c1
 
 945
CNS ML-DmBG2-c2
 
 938
tumorous blood cells mbn2
 
 614
ovary fGS/OSS
 
 432
ovary OSC
 
 277
ovary OSS
 
 157
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Cell Line   Expression Level
Schneider line 2 S2R+
 
 
Schneider line 2 Sg4
 
 
embryonic 1182-4H
 
 
embryonic GM2
 
 
embryonic Kc167
 
 
embryonic S1
 
 
embryonic S3
 
 
leg disc CME L1
 
 
wing disc CME-W2
 
 
wing disc ML-DmD8
 
 
wing disc ML-DmD9
 
 
wing disc ML-DmD16-c3
 
 
wing disc ML-DmD21
 
 
wing disc ML-DmD32
 
 
haltere disc ML-DmD17-c3
 
 
eye-antennal disc ML-DmD11
 
 
antennal disc ML-DmD20-c5
 
 
mixed discs ML-DmD4-c1
 
 
CNS ML-DmBG1-c1
 
 
CNS ML-DmBG2-c2
 
 
tumorous blood cells mbn2
 
 
ovary fGS/OSS
 
 
ovary OSC
 
 
ovary OSS
 
 

hide modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 368
cold shock, 4-day adult
 
 280
heat shock, 4-day adult
 
 824
Cadmium 50 mM 6 hrs, larvae L3
 
 1037
Cadmium 50 mM 12 hrs, larvae L3
 
 754
Cadmium 50 mM 48 hrs, 4-day adult
 
 587
Cadmium 100 mM 48 hrs, 4-day adult
 
 321
Copper 0.5 mM 12 hrs, larvae L3
 
 428
Copper 15 mM 48 hrs, 4-day adult
 
 100
Zinc 5 mM 12 hrs, larvae L3
 
 354
Zinc 4.5 mM 48 hrs, 4-day adult
 
 220
Ethanol 2.5% 3 hrs, larvae L3
 
 660
Ethanol 5% 3 hrs, larvae L3
 
 883
Ethanol 10% 3 hrs, larvae L3
 
 884
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 811
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 387
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 255
Paraquat 5 mM 48 hrs, 4-day adult
 
 520
Paraquat 10 mM 48 hrs, 4-day adult
 
 752
Rotenone 2 μg 12 hrs, larvae L3
 
 1045
Rotenone 8 μg 12 hrs, larvae L3
 
 1261
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Linear, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 (368)
cold shock, 4-day adult
 (280)
heat shock, 4-day adult
 (824)
Cadmium 50 mM 6 hrs, larvae L3
 (1037)
Cadmium 50 mM 12 hrs, larvae L3
 (754)
Cadmium 50 mM 48 hrs, 4-day adult
 (587)
Cadmium 100 mM 48 hrs, 4-day adult
 (321)
Copper 0.5 mM 12 hrs, larvae L3
 (428)
Copper 15 mM 48 hrs, 4-day adult
 (100)
Zinc 5 mM 12 hrs, larvae L3
 (354)
Zinc 4.5 mM 48 hrs, 4-day adult
 (220)
Ethanol 2.5% 3 hrs, larvae L3
 (660)
Ethanol 5% 3 hrs, larvae L3
 (883)
Ethanol 10% 3 hrs, larvae L3
 (884)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (811)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (387)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (255)
Paraquat 5 mM 48 hrs, 4-day adult
 (520)
Paraquat 10 mM 48 hrs, 4-day adult
 (752)
Rotenone 2 μg 12 hrs, larvae L3
 (1045)
Rotenone 8 μg 12 hrs, larvae L3
 (1261)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 (368)
cold shock, 4-day adult
 (280)
heat shock, 4-day adult
 (824)
Cadmium 50 mM 6 hrs, larvae L3
 (1037)
Cadmium 50 mM 12 hrs, larvae L3
 (754)
Cadmium 50 mM 48 hrs, 4-day adult
 (587)
Cadmium 100 mM 48 hrs, 4-day adult
 (321)
Copper 0.5 mM 12 hrs, larvae L3
 (428)
Copper 15 mM 48 hrs, 4-day adult
 
 100
Zinc 5 mM 12 hrs, larvae L3
 (354)
Zinc 4.5 mM 48 hrs, 4-day adult
 (220)
Ethanol 2.5% 3 hrs, larvae L3
 (660)
Ethanol 5% 3 hrs, larvae L3
 (883)
Ethanol 10% 3 hrs, larvae L3
 (884)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (811)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (387)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (255)
Paraquat 5 mM 48 hrs, 4-day adult
 (520)
Paraquat 10 mM 48 hrs, 4-day adult
 (752)
Rotenone 2 μg 12 hrs, larvae L3
 (1045)
Rotenone 8 μg 12 hrs, larvae L3
 (1261)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 368
cold shock, 4-day adult
 
 280
heat shock, 4-day adult
 
 824
Cadmium 50 mM 6 hrs, larvae L3
 
 1037
Cadmium 50 mM 12 hrs, larvae L3
 
 754
Cadmium 50 mM 48 hrs, 4-day adult
 
 587
Cadmium 100 mM 48 hrs, 4-day adult
 
 321
Copper 0.5 mM 12 hrs, larvae L3
 
 428
Copper 15 mM 48 hrs, 4-day adult
 
 100
Zinc 5 mM 12 hrs, larvae L3
 
 354
Zinc 4.5 mM 48 hrs, 4-day adult
 
 220
Ethanol 2.5% 3 hrs, larvae L3
 
 660
Ethanol 5% 3 hrs, larvae L3
 
 883
Ethanol 10% 3 hrs, larvae L3
 
 884
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 811
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 387
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 255
Paraquat 5 mM 48 hrs, 4-day adult
 
 520
Paraquat 10 mM 48 hrs, 4-day adult
 
 752
Rotenone 2 μg 12 hrs, larvae L3
 
 1045
Rotenone 8 μg 12 hrs, larvae L3
 
 1261
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 368
cold shock, 4-day adult
 
 280
heat shock, 4-day adult
 
 824
Cadmium 50 mM 6 hrs, larvae L3
 
 1037
Cadmium 50 mM 12 hrs, larvae L3
 
 754
Cadmium 50 mM 48 hrs, 4-day adult
 
 587
Cadmium 100 mM 48 hrs, 4-day adult
 
 321
Copper 0.5 mM 12 hrs, larvae L3
 
 428
Copper 15 mM 48 hrs, 4-day adult
 
 100
Zinc 5 mM 12 hrs, larvae L3
 
 354
Zinc 4.5 mM 48 hrs, 4-day adult
 
 220
Ethanol 2.5% 3 hrs, larvae L3
 
 660
Ethanol 5% 3 hrs, larvae L3
 
 883
Ethanol 10% 3 hrs, larvae L3
 
 884
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 811
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 387
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 255
Paraquat 5 mM 48 hrs, 4-day adult
 
 520
Paraquat 10 mM 48 hrs, 4-day adult
 
 752
Rotenone 2 μg 12 hrs, larvae L3
 
 1045
Rotenone 8 μg 12 hrs, larvae L3
 
 1261
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 (368)
cold shock, 4-day adult
 (280)
heat shock, 4-day adult
 (824)
Cadmium 50 mM 6 hrs, larvae L3
 (1037)
Cadmium 50 mM 12 hrs, larvae L3
 (754)
Cadmium 50 mM 48 hrs, 4-day adult
 (587)
Cadmium 100 mM 48 hrs, 4-day adult
 (321)
Copper 0.5 mM 12 hrs, larvae L3
 (428)
Copper 15 mM 48 hrs, 4-day adult
 (100)
Zinc 5 mM 12 hrs, larvae L3
 (354)
Zinc 4.5 mM 48 hrs, 4-day adult
 (220)
Ethanol 2.5% 3 hrs, larvae L3
 (660)
Ethanol 5% 3 hrs, larvae L3
 (883)
Ethanol 10% 3 hrs, larvae L3
 (884)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (811)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (387)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (255)
Paraquat 5 mM 48 hrs, 4-day adult
 (520)
Paraquat 10 mM 48 hrs, 4-day adult
 (752)
Rotenone 2 μg 12 hrs, larvae L3
 (1045)
Rotenone 8 μg 12 hrs, larvae L3
 (1261)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 (368)
cold shock, 4-day adult
 (280)
heat shock, 4-day adult
 (824)
Cadmium 50 mM 6 hrs, larvae L3
 (1037)
Cadmium 50 mM 12 hrs, larvae L3
 (754)
Cadmium 50 mM 48 hrs, 4-day adult
 (587)
Cadmium 100 mM 48 hrs, 4-day adult
 (321)
Copper 0.5 mM 12 hrs, larvae L3
 (428)
Copper 15 mM 48 hrs, 4-day adult
 
 100
Zinc 5 mM 12 hrs, larvae L3
 (354)
Zinc 4.5 mM 48 hrs, 4-day adult
 (220)
Ethanol 2.5% 3 hrs, larvae L3
 (660)
Ethanol 5% 3 hrs, larvae L3
 (883)
Ethanol 10% 3 hrs, larvae L3
 (884)
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (811)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (387)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (255)
Paraquat 5 mM 48 hrs, 4-day adult
 (520)
Paraquat 10 mM 48 hrs, 4-day adult
 (752)
Rotenone 2 μg 12 hrs, larvae L3
 (1045)
Rotenone 8 μg 12 hrs, larvae L3
 (1261)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 368
cold shock, 4-day adult
 
 280
heat shock, 4-day adult
 
 824
Cadmium 50 mM 6 hrs, larvae L3
 
 1037
Cadmium 50 mM 12 hrs, larvae L3
 
 754
Cadmium 50 mM 48 hrs, 4-day adult
 
 587
Cadmium 100 mM 48 hrs, 4-day adult
 
 321
Copper 0.5 mM 12 hrs, larvae L3
 
 428
Copper 15 mM 48 hrs, 4-day adult
 
 100
Zinc 5 mM 12 hrs, larvae L3
 
 354
Zinc 4.5 mM 48 hrs, 4-day adult
 
 220
Ethanol 2.5% 3 hrs, larvae L3
 
 660
Ethanol 5% 3 hrs, larvae L3
 
 883
Ethanol 10% 3 hrs, larvae L3
 
 884
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 811
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 387
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 255
Paraquat 5 mM 48 hrs, 4-day adult
 
 520
Paraquat 10 mM 48 hrs, 4-day adult
 
 752
Rotenone 2 μg 12 hrs, larvae L3
 
 1045
Rotenone 8 μg 12 hrs, larvae L3
 
 1261
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Treatment   Expression Level
extended cold, 4-day adult
 
 
cold shock, 4-day adult
 
 
heat shock, 4-day adult
 
 
Cadmium 50 mM 6 hrs, larvae L3
 
 
Cadmium 50 mM 12 hrs, larvae L3
 
 
Cadmium 50 mM 48 hrs, 4-day adult
 
 
Cadmium 100 mM 48 hrs, 4-day adult
 
 
Copper 0.5 mM 12 hrs, larvae L3
 
 
Copper 15 mM 48 hrs, 4-day adult
 
 
Zinc 5 mM 12 hrs, larvae L3
 
 
Zinc 4.5 mM 48 hrs, 4-day adult
 
 
Ethanol 2.5% 3 hrs, larvae L3
 
 
Ethanol 5% 3 hrs, larvae L3
 
 
Ethanol 10% 3 hrs, larvae L3
 
 
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 
Paraquat 5 mM 48 hrs, 4-day adult
 
 
Paraquat 10 mM 48 hrs, 4-day adult
 
 
Rotenone 2 μg 12 hrs, larvae L3
 
 
Rotenone 8 μg 12 hrs, larvae L3
 
 

hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 10 )
For All Classical Alleles Show

Allele of RpLP0ClassMutagenStocksKnown lesion
RpLP0NP2385
2 --
RpLP001544hypermorphic allele - genetic evidence, gain of function allele1 Yes
RpLP0c05892
1 --
RpLP0d095671 --
RpLP0DP00460
1 --
RpLP0UM-8046-3
1 --
RpLP0306loss of function allele0 Yes
RpLP0360 Yes
RpLP080 Yes
RpLP0revwild-type allele0 Yes
hide Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show

Allele of RpLP0ClassMutagenStocksKnown lesion
RpLP0GD131892 Yes
RpLP0JF013351 Yes
hide Aneuploid Aberrations
Not disrupted in