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Gene Dmel\bur

General Information
Symbol	Dmel\bur	Species	D. melanogaster
Name	burgundy	Annotation symbol	CG9242
Feature type	protein_coding_gene	FlyBase ID	FBgn0000239
Gene Model Status	Current	Stock availability	16 publicly available
Also Known As	GMPS
Genomic Location
Chromosome (arm)	2L	Recombination map	2-55.7
Cytogenetic map	39A7-39B1	Sequence location	2L:21,174,383..21,179,697 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene burgundy is referred to in FlyBase by the symbol Dmel\bur (CG9242, FBgn0000239). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: ubiquitin-specific protease activator activity. There is experimental evidence that it is involved in the biological process: regulation of ubiquitin-specific protease activity; histone deubiquitination; axon guidance. 21 alleles are reported. The phenotypes of these alleles are annotated with: lamina; medulla; pigment cell. It has one annotated transcript and one annotated polypeptide. Protein features are: Anthranilate synthase component II/delta crystallin; GMP synthase, C-terminal; GMP synthase, N-terminal; Glutamine amidotransferase superfamily; Glutamine amidotransferase type 1; NAD/GMP synthase; Rossmann-like alpha/beta/alpha sandwich fold. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed within 00-12 and 18-24 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval Malpighian tubules. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1635718_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of bur. Gene sequence location is 2L:21174383..21179697.
Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage	bur: burgundy Eye color dull, darkish brown (like pr), brilliant orange in combination with cn. burgua supplementable by guanosine but not other ribonucleosides or nucleic acid bases; inosine-5 -monophosphate dehydrogenase activity reduced compared to normal (Johnston, Nash, and Naguib, 1985, Biochem. Genet. 23: 539-55). Classification and viability excellent. Fertility of females good; of males, variable. RK1. burgua Recessive auxotroph for guanosine; supplementable by 3.2 mM of guanosine but not by other ribonucleosides or nucleic acid bases. Homozygotes have dark red eyes; this character segregates with the nutritional requirement. Inosine dehydrogenase activity of burgua larval extracts an order of magnitude lower than that of wild type (Johnston, Nash, and Naguib, 1985, Biochem. Genet. 23: 539-55).
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10
FB2012_01	Sequence features HFA03163 BKN22831
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 39A7-39B1   Limits computationally determined from genome sequence between P{lacW}l(2)k07215k07215&P{lacW}snRNA:U4:39Bk09410 and P{lacW}l(2)k14505k14505&P{lacW}l(2)k05106k05106
Experimentally Determined Cytological Location
Cytogenetic map Notes References 39B1-39B2   (determined by in situ hybridisation)   (Spradling et al., 1999) 39B1-39B2     (BDGP Project Members, 1994-1999) 39E-39E   Location determined by an unnamed bur rearrangement suggested to be In(2LR)39E;42B.   (Chomey and Nash, 1996)
Experimentally Determined Recombination Data
Location	2-55.7 (Chomey and Nash, 1996, Meyer and Edmondson, 1949) 2- (Neufeld et al., 1998)
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\bur for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) bur-RB FBtr0301342  NM_138759   2929   683
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein bur-PB   FBpp0290556   76.8   683   6.79     NP_620114   AAF53975
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • GMP synthase, C-terminal (IPR001674) GMP synthase, N-terminal (IPR004739) Anthranilate synthase component II/delta crystallin (IPR006220) Glutamine amidotransferase superfamily (IPR011702) Rossmann-like alpha/beta/alpha sandwich fold (IPR014729) Glutamine amidotransferase type 1 (IPR017926) NAD/GMP synthase (IPR022310)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA202080   AA390658   AA390901   AA391495   AA392681   AA438313   AA438314   AA438784   AA439099   AA439145   AA439295   AA440077   AA440955   AA539233   AA540789   AA540814   AA735600   AA735675   AA816770   AA940848   AA941901   AA949325   AE014134 AAF53975   AF015270 AAL71891   AI114266   AI239160   AI402366   AI512088   AI515198   AI516032   AI516741   AI534863   AQ073622   AQ074092   AW943625   AX094012   AX094069   AX094080   AX094086   AY118572 AAM49941   BG636198   BI163866   BI167020   BI173024   BI173278   BI173677   BI173699   BI213069   BI213736   BI216753   BI230889   BI242174   BI243206   BI243980   BI352496   BI353903   BI356450   BI365671   BI367454   BI368562   BI370325   BI375620   BI482163   BI482898   BI483213   BI638000   BI638093   BP546357   BP548761   BT083416   CK660987   CK661927   CL844396   CO271713   CO275256   CO283323   CO285200   CO299857   CO303471   CO305731   CO311445   CO315831   CO319698   CO320941   CO335356   CO336715   CO337519   CO341214   EC060127   EC071962   EC082838   EC084930   EC085225   EC088591   EC089919   EC089920   EC213178   EC215434   EC237931   EC238405   EC250618   EC257130   EC262232   EC265206   EV587138   EV598041   G00613   GH749260   GH750833   GH771382   GH783212   GH790848   GH791674   GH793481   GH809645   GH812005   GH813891   GH815819   GH832430   GH834234   GH836160   GH850787   GH862100   GH863584   GH864658   GH873521   GH876061   GH879221   GH897958   GH911079   GH913027   GH920004   GH920750   GH921353   GH922369   GH923105   GH923306   GH931905   GH934796   GH937776   GH938036
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8WSN4 Q9VIE7
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0000239    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0000239 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed within 00-12 and 18-24 hour embryonic stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0000239 expression level Developmental Stage   Expression Level embryo 00-02hr    8691 embryo 02-04hr    8955 embryo 04-06hr    3990 embryo 06-08hr    3346 embryo 08-10hr    4209 embryo 10-12hr    3064 embryo 12-14hr    2995 embryo 14-16hr    3201 embryo 16-18hr    2755 embryo 18-20hr    1416 embryo 20-22hr    4984 embryo 22-24hr    4531 larva L1    3391 larva L2    2292 larva L3 12hr old    2046 larva L3 puffstage 1-2    2365 larva L3 puffstage 3-6    3002 larva L3 puffstage 7-9    3035 white prepupae new    2917 white prepupae 12hr    2472 white prepupae 24hr    2619 pupae 2d postWPP    2268 pupae 3d postWPP    3342 pupae 4d postWPP    2276 adult male 01day    2277 adult male 05day    2427 adult male 30day    2651 adult female 01day    4362 adult female 05day    6676 adult female 30day    6375 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (8691) embryo 02-04hr  (8955) embryo 04-06hr  (3990) embryo 06-08hr  (3346) embryo 08-10hr  (4209) embryo 10-12hr  (3064) embryo 12-14hr  (2995) embryo 14-16hr  (3201) embryo 16-18hr  (2755) embryo 18-20hr  (1416) embryo 20-22hr  (4984) embryo 22-24hr  (4531) larva L1  (3391) larva L2  (2292) larva L3 12hr old  (2046) larva L3 puffstage 1-2  (2365) larva L3 puffstage 3-6  (3002) larva L3 puffstage 7-9  (3035) white prepupae new  (2917) white prepupae 12hr  (2472) white prepupae 24hr  (2619) pupae 2d postWPP  (2268) pupae 3d postWPP  (3342) pupae 4d postWPP  (2276) adult male 01day  (2277) adult male 05day  (2427) adult male 30day  (2651) adult female 01day  (4362) adult female 05day  (6676) adult female 30day  (6375) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (8691) embryo 02-04hr  (8955) embryo 04-06hr  (3990) embryo 06-08hr  (3346) embryo 08-10hr  (4209) embryo 10-12hr  (3064) embryo 12-14hr  (2995) embryo 14-16hr  (3201) embryo 16-18hr  (2755) embryo 18-20hr  1416 embryo 20-22hr  (4984) embryo 22-24hr  (4531) larva L1  (3391) larva L2  (2292) larva L3 12hr old  (2046) larva L3 puffstage 1-2  (2365) larva L3 puffstage 3-6  (3002) larva L3 puffstage 7-9  (3035) white prepupae new  (2917) white prepupae 12hr  (2472) white prepupae 24hr  (2619) pupae 2d postWPP  (2268) pupae 3d postWPP  (3342) pupae 4d postWPP  (2276) adult male 01day  (2277) adult male 05day  (2427) adult male 30day  (2651) adult female 01day  (4362) adult female 05day  (6676) adult female 30day  (6375) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    8691 embryo 02-04hr    8955 embryo 04-06hr    3990 embryo 06-08hr    3346 embryo 08-10hr    4209 embryo 10-12hr    3064 embryo 12-14hr    2995 embryo 14-16hr    3201 embryo 16-18hr    2755 embryo 18-20hr    1416 embryo 20-22hr    4984 embryo 22-24hr    4531 larva L1    3391 larva L2    2292 larva L3 12hr old    2046 larva L3 puffstage 1-2    2365 larva L3 puffstage 3-6    3002 larva L3 puffstage 7-9    3035 white prepupae new    2917 white prepupae 12hr    2472 white prepupae 24hr    2619 pupae 2d postWPP    2268 pupae 3d postWPP    3342 pupae 4d postWPP    2276 adult male 01day    2277 adult male 05day    2427 adult male 30day    2651 adult female 01day    4362 adult female 05day    6676 adult female 30day    6375 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    8691 embryo 02-04hr    8955 embryo 04-06hr    3990 embryo 06-08hr    3346 embryo 08-10hr    4209 embryo 10-12hr    3064 embryo 12-14hr    2995 embryo 14-16hr    3201 embryo 16-18hr    2755 embryo 18-20hr    1416 embryo 20-22hr    4984 embryo 22-24hr    4531 larva L1    3391 larva L2    2292 larva L3 12hr old    2046 larva L3 puffstage 1-2    2365 larva L3 puffstage 3-6    3002 larva L3 puffstage 7-9    3035 white prepupae new    2917 white prepupae 12hr    2472 white prepupae 24hr    2619 pupae 2d postWPP    2268 pupae 3d postWPP    3342 pupae 4d postWPP    2276 adult male 01day    2277 adult male 05day    2427 adult male 30day    2651 adult female 01day    4362 adult female 05day    6676 adult female 30day    6375 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0000239 expression level Developmental Stage   Expression Level embryo 00-02hr    8691 embryo 02-04hr    8955 embryo 04-06hr    3990 embryo 06-08hr    3346 embryo 08-10hr    4209 embryo 10-12hr    3064 embryo 12-14hr    2995 embryo 14-16hr    3201 embryo 16-18hr    2755 embryo 18-20hr    1416 embryo 20-22hr    4984 embryo 22-24hr    4531 larva L1    3391 larva L2    2292 larva L3 12hr old    2046 larva L3 puffstage 1-2    2365 larva L3 puffstage 3-6    3002 larva L3 puffstage 7-9    3035 white prepupae new    2917 white prepupae 12hr    2472 white prepupae 24hr    2619 pupae 2d postWPP    2268 pupae 3d postWPP    3342 pupae 4d postWPP    2276 adult male 01day    2277 adult male 05day    2427 adult male 30day    2651 adult female 01day    4362 adult female 05day    6676 adult female 30day    6375 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (8691) embryo 02-04hr  (8955) embryo 04-06hr  (3990) embryo 06-08hr  (3346) embryo 08-10hr  (4209) embryo 10-12hr  (3064) embryo 12-14hr  (2995) embryo 14-16hr  (3201) embryo 16-18hr  (2755) embryo 18-20hr  (1416) embryo 20-22hr  (4984) embryo 22-24hr  (4531) larva L1  (3391) larva L2  (2292) larva L3 12hr old  (2046) larva L3 puffstage 1-2  (2365) larva L3 puffstage 3-6  (3002) larva L3 puffstage 7-9  (3035) white prepupae new  (2917) white prepupae 12hr  (2472) white prepupae 24hr  (2619) pupae 2d postWPP  (2268) pupae 3d postWPP  (3342) pupae 4d postWPP  (2276) adult male 01day  (2277) adult male 05day  (2427) adult male 30day  (2651) adult female 01day  (4362) adult female 05day  (6676) adult female 30day  (6375) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (8691) embryo 02-04hr  (8955) embryo 04-06hr  (3990) embryo 06-08hr  (3346) embryo 08-10hr  (4209) embryo 10-12hr  (3064) embryo 12-14hr  (2995) embryo 14-16hr  (3201) embryo 16-18hr  (2755) embryo 18-20hr  1416 embryo 20-22hr  (4984) embryo 22-24hr  (4531) larva L1  (3391) larva L2  2292 larva L3 12hr old  2046 larva L3 puffstage 1-2  2365 larva L3 puffstage 3-6  (3002) larva L3 puffstage 7-9  (3035) white prepupae new  (2917) white prepupae 12hr  (2472) white prepupae 24hr  (2619) pupae 2d postWPP  2268 pupae 3d postWPP  (3342) pupae 4d postWPP  2276 adult male 01day  2277 adult male 05day  2427 adult male 30day  (2651) adult female 01day  (4362) adult female 05day  (6676) adult female 30day  (6375) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    8691 embryo 02-04hr    8955 embryo 04-06hr    3990 embryo 06-08hr    3346 embryo 08-10hr    4209 embryo 10-12hr    3064 embryo 12-14hr    2995 embryo 14-16hr    3201 embryo 16-18hr    2755 embryo 18-20hr    1416 embryo 20-22hr    4984 embryo 22-24hr    4531 larva L1    3391 larva L2    2292 larva L3 12hr old    2046 larva L3 puffstage 1-2    2365 larva L3 puffstage 3-6    3002 larva L3 puffstage 7-9    3035 white prepupae new    2917 white prepupae 12hr    2472 white prepupae 24hr    2619 pupae 2d postWPP    2268 pupae 3d postWPP    3342 pupae 4d postWPP    2276 adult male 01day    2277 adult male 05day    2427 adult male 30day    2651 adult female 01day    4362 adult female 05day    6676 adult female 30day    6375 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    8691 embryo 02-04hr    8955 embryo 04-06hr    3990 embryo 06-08hr    3346 embryo 08-10hr    4209 embryo 10-12hr    3064 embryo 12-14hr    2995 embryo 14-16hr    3201 embryo 16-18hr    2755 embryo 18-20hr    1416 embryo 20-22hr    4984 embryo 22-24hr    4531 larva L1    3391 larva L2    2292 larva L3 12hr old    2046 larva L3 puffstage 1-2    2365 larva L3 puffstage 3-6    3002 larva L3 puffstage 7-9    3035 white prepupae new    2917 white prepupae 12hr    2472 white prepupae 24hr    2619 pupae 2d postWPP    2268 pupae 3d postWPP    3342 pupae 4d postWPP    2276 adult male 01day    2277 adult male 05day    2427 adult male 30day    2651 adult female 01day    4362 adult female 05day    6676 adult female 30day    6375 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0000239    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0000239 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval Malpighian tubules. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0000239 expression level Tissue   Expression Level Larval Central Nervous System    239.325 Larval Midgut    126.3 Larval Hindgut    175.9 Larval Malpighian Tubules    653.9 Larval Fat Body    247.4 Larval Salivary Gland    161.6 Larval Trachea    164.375 Larval Carcass    153.9 Adult Head    195.7 Adult Eye    127.3 Adult Brain    167.4 Adult Thoracic-Abdominal Ganglion    137.6 Adult Crop    182.8 Adult Midgut    119 Adult Hindgut    160.4 Adult Malpighian Tubules    113.6 Adult Fat Body    331.6 Adult Salivary Gland    180.9 Adult Heart    185.625 Adult VirginFemale Spermatheca    272.7 Adult InseminatedFemale Spermatheca    296 Adult Ovary    446.5 Adult Testis    241.8 Adult Male Accessory Gland    153.5 Adult Carcass    190.8 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    239.325 Larval Midgut    126.3 Larval Hindgut    175.9 Larval Malpighian Tubules  (653.9) Larval Fat Body    247.4 Larval Salivary Gland    161.6 Larval Trachea    164.375 Larval Carcass    153.9 Adult Head    195.7 Adult Eye    127.3 Adult Brain    167.4 Adult Thoracic-Abdominal Ganglion    137.6 Adult Crop    182.8 Adult Midgut    119 Adult Hindgut    160.4 Adult Malpighian Tubules    113.6 Adult Fat Body    331.6 Adult Salivary Gland    180.9 Adult Heart    185.625 Adult VirginFemale Spermatheca    272.7 Adult InseminatedFemale Spermatheca    296 Adult Ovary    446.5 Adult Testis    241.8 Adult Male Accessory Gland    153.5 Adult Carcass    190.8 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    239.325 Larval Midgut    126.3 Larval Hindgut    175.9 Larval Malpighian Tubules    653.9 Larval Fat Body    247.4 Larval Salivary Gland    161.6 Larval Trachea    164.375 Larval Carcass    153.9 Adult Head    195.7 Adult Eye    127.3 Adult Brain    167.4 Adult Thoracic-Abdominal Ganglion    137.6 Adult Crop    182.8 Adult Midgut    119 Adult Hindgut    160.4 Adult Malpighian Tubules    113.6 Adult Fat Body    331.6 Adult Salivary Gland    180.9 Adult Heart    185.625 Adult VirginFemale Spermatheca    272.7 Adult InseminatedFemale Spermatheca    296 Adult Ovary    446.5 Adult Testis    241.8 Adult Male Accessory Gland    153.5 Adult Carcass    190.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    239.325 Larval Midgut    126.3 Larval Hindgut    175.9 Larval Malpighian Tubules    653.9 Larval Fat Body    247.4 Larval Salivary Gland    161.6 Larval Trachea    164.375 Larval Carcass    153.9 Adult Head    195.7 Adult Eye    127.3 Adult Brain    167.4 Adult Thoracic-Abdominal Ganglion    137.6 Adult Crop    182.8 Adult Midgut    119 Adult Hindgut    160.4 Adult Malpighian Tubules    113.6 Adult Fat Body    331.6 Adult Salivary Gland    180.9 Adult Heart    185.625 Adult VirginFemale Spermatheca    272.7 Adult InseminatedFemale Spermatheca    296 Adult Ovary    446.5 Adult Testis    241.8 Adult Male Accessory Gland    153.5 Adult Carcass    190.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0000239 expression level Tissue   Expression Level Larval Central Nervous System    239.325 Larval Midgut    126.3 Larval Hindgut    175.9 Larval Malpighian Tubules    653.9 Larval Fat Body    247.4 Larval Salivary Gland    161.6 Larval Trachea    164.375 Larval Carcass    153.9 Adult Head    195.7 Adult Eye    127.3 Adult Brain    167.4 Adult Thoracic-Abdominal Ganglion    137.6 Adult Crop    182.8 Adult Midgut    119 Adult Hindgut    160.4 Adult Malpighian Tubules    113.6 Adult Fat Body    331.6 Adult Salivary Gland    180.9 Adult Heart    185.625 Adult VirginFemale Spermatheca    272.7 Adult InseminatedFemale Spermatheca    296 Adult Ovary    446.5 Adult Testis    241.8 Adult Male Accessory Gland    153.5 Adult Carcass    190.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    239.325 Larval Midgut    126.3 Larval Hindgut    175.9 Larval Malpighian Tubules  653.9 Larval Fat Body    247.4 Larval Salivary Gland    161.6 Larval Trachea    164.375 Larval Carcass    153.9 Adult Head    195.7 Adult Eye    127.3 Adult Brain    167.4 Adult Thoracic-Abdominal Ganglion    137.6 Adult Crop    182.8 Adult Midgut    119 Adult Hindgut    160.4 Adult Malpighian Tubules    113.6 Adult Fat Body    331.6 Adult Salivary Gland    180.9 Adult Heart    185.625 Adult VirginFemale Spermatheca    272.7 Adult InseminatedFemale Spermatheca    296 Adult Ovary    446.5 Adult Testis    241.8 Adult Male Accessory Gland    153.5 Adult Carcass    190.8 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    239.325 Larval Midgut    126.3 Larval Hindgut    175.9 Larval Malpighian Tubules    653.9 Larval Fat Body    247.4 Larval Salivary Gland    161.6 Larval Trachea    164.375 Larval Carcass    153.9 Adult Head    195.7 Adult Eye    127.3 Adult Brain    167.4 Adult Thoracic-Abdominal Ganglion    137.6 Adult Crop    182.8 Adult Midgut    119 Adult Hindgut    160.4 Adult Malpighian Tubules    113.6 Adult Fat Body    331.6 Adult Salivary Gland    180.9 Adult Heart    185.625 Adult VirginFemale Spermatheca    272.7 Adult InseminatedFemale Spermatheca    296 Adult Ovary    446.5 Adult Testis    241.8 Adult Male Accessory Gland    153.5 Adult Carcass    190.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    239.325 Larval Midgut    126.3 Larval Hindgut    175.9 Larval Malpighian Tubules    653.9 Larval Fat Body    247.4 Larval Salivary Gland    161.6 Larval Trachea    164.375 Larval Carcass    153.9 Adult Head    195.7 Adult Eye    127.3 Adult Brain    167.4 Adult Thoracic-Abdominal Ganglion    137.6 Adult Crop    182.8 Adult Midgut    119 Adult Hindgut    160.4 Adult Malpighian Tubules    113.6 Adult Fat Body    331.6 Adult Salivary Gland    180.9 Adult Heart    185.625 Adult VirginFemale Spermatheca    272.7 Adult InseminatedFemale Spermatheca    296 Adult Ovary    446.5 Adult Testis    241.8 Adult Male Accessory Gland    153.5 Adult Carcass    190.8 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    195.7   NA  Eye    127.3   NA  Brain    167.4   239.325  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    137.6   NA  Crop    182.8   126.3  Midgut    119   175.9  Hindgut    160.4   653.9  Malpighian Tubules    113.6   247.4  Fat Body    331.6   161.6  Salivary Gland    180.9   NA  Heart    185.625   164.375  Trachea    NA   NA  VirginFemale Spermatheca    272.7   NA  InseminatedFemale Spermatheca    296   NA  Ovary    446.5   NA  Testis    241.8   NA  Male Accessory Gland    153.5   153.9  Carcass    190.8 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_01
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0000239 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9242-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal burk07130 lethal | pupal stage | recessive bure10 lethal | recessive bur10523 burk07130 burk12909 burk14029 viable bur1 bur2 viable, with Scer\GAL4pnr-MD237 burGD13797 Sterility Allele female fertile bur1 female fertile | good bur1 male fertile | partially bur1 Other Phenotypes Allele auxotroph | recessive burgua eye color defective bur1 bur2 burgua eye color defective | recessive bur1 neuroanatomy defective bure10 burk07130 visible | recessive bur1 bur2 Phenotype manifest in Allele lamina bure10 burk07130 medulla bure10 burk07130 photoreceptor cell & axon bure10 burk07130 photoreceptor cell & axon | somatic clone | cell autonomous burk07130 photoreceptor cell R7 & growth cone bure10 burk07130 photoreceptor cell R8 & growth cone bure10 burk07130 pigment cell bur1 bur2 burgua
Classical Alleles ( 13 )
For All Classical Alleles Show
Allele of bur Class Mutagen Stocks Known lesion bur1 U.V. 5 -- burEY11080 P-element activity 2 -- burk07130 P-element activity 2 Yes burk12909 P-element activity 1 -- burNP4275 1 -- bur10523 P-element activity 0 -- bur2 spontaneous 0 -- bure10 loss of function allele ethyl methanesulfonate X ray 0 Yes burEP1114 P-element activity 0 -- burEP2480 P-element activity 0 -- burgua ethyl methanesulfonate 0 -- burk14029 P-element activity 0 -- burunspecified ethyl methanesulfonate X ray 0 --
Alleles Carried on Transgenic Constructs ( 8 )
For All Alleles Carried on Transgenic Constructs Show
Allele of bur Class Mutagen Stocks Known lesion burGD13797 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes burHMS01234 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes burJF01503 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes burKK102735 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes burC95A.Scer\UAS in vitro construct - regulatory fusion in vitro construct - amino acid replacement 0 Yes burNIG.9242R in vitro construct - regulatory fusion in vitro construct - RNAi 0 Yes burS242L.Scer\UAS in vitro construct - regulatory fusion in vitro construct - amino acid replacement 0 Yes burScer\UAS.cLa in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel6047 (Ryder, 2004.4.26) Df(2L)Exel9027 (Ryder, 2004.4.26) Df(2L)pr-M1 (Carpenter, 1999.2.23) Df(2L)TW1 (BDGP Project Members, 1994-1999) Df(2L)TW65 (Spradling et al., 1999, BDGP Project Members, 1994-1999) Df(2L)TW84 (Neufeld et al., 1998, BDGP Project Members, 1994-1999) Df(2L)TW161 (Neufeld et al., 1998, Spradling et al., 1999, BDGP Project Members, 1994-1999)
Not disrupted in	Df(2L)pr-A14 (BDGP Project Members, 1994-1999)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD13797} NA P{KK102735} NA P{TRiP.HMS01234} NA P{TRiP.JF01503} NA P{UAS-bur.C95A} NA P{UAS-bur.L} NA P{UAS-bur.S242L} NA characterization construct P{NIG.9242R} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap P{lacW}burk07130 No P{lacW}burk12909 No P{lacW}burk14029 No P{lacW}l(2)SH0718SH0718 No P{PZ}bur10523 No insertion of mobile activating element P{EP}burEP1114 NA P{EP}burEP2480 NA P{EPgy2}burEY11080 NA insertion of enhancer trap binary system P{GawB}burNP4275 No
Gene Ontology: Function, Process & Cellular Component ( 10 unique terms )
Terms Based on Experimental Evidence ( 6 terms )
Molecular Function
CV term Evidence References
ubiquitin-specific protease activator activity inferred from direct assay (van der Knaap et al., 2005)
Biological Process
CV term Evidence References
axon guidance inferred from mutant phenotype (Long et al., 2006) histone deubiquitination inferred from direct assay (van der Knaap et al., 2005) regulation of ubiquitin-specific protease activity inferred from direct assay (van der Knaap et al., 2005)
Cellular Component
CV term Evidence References
polytene chromosome inferred from direct assay (van der Knaap et al., 2010) protein complex inferred from physical interaction with Usp7 (van der Knaap et al., 2005)
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
ATP binding inferred from electronic annotation with InterPro:IPR001674, InterPro:IPR004739 (FlyBase Curators et al., 2004-) GMP synthase (glutamine-hydrolyzing) activity inferred from sequence or structural similarity with NCBI_gi:4504035 (FlyBase, 1992-) GMP synthase activity inferred from sequence or structural similarity (Chomey and Nash, 1996)
Biological Process
CV term Evidence References
GMP biosynthetic process inferred from electronic annotation with InterPro:IPR001674, InterPro:IPR004739 (FlyBase Curators et al., 2004-) inferred from sequence or structural similarity (Chomey and Nash, 1996)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions bur allele Gene References bur1 cn (Meyer and Edmondson, 1949) bure10 sina (Neufeld et al., 1998) burunspecified sina (Neufeld et al., 1998) unspecified Rac1 (Long et al., 2006)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 69912 DroID - A comprehensive database of gene and protein interactions. • FBgn0000239 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 45830
Orthologs
Genome-wide drosophilid orthologs	Dana\GF15152 Dere\GG21516 Dgri\GH10300 Dmoj\GI17996 Dper\GL25858 Dpse\GA21637 Dsec\GM23268 Dsim\GD21646 Dvir\GJ19601 Dwil\GK21111 Dyak\GE12995
Curated drosophilid orthologs	Dpse\GA21637
Linkouts	OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV15300 LH24096 ISCW018543 FBgn0230703 FBgn0223103 FBgn0206743 FBgn0193069 FBgn0178135 JGI_V11_308688 FBgn0081622 FBgn0163442 FBgn0140736 FBgn0117781 FBgn0113694 FBgn0092177 CPIJ000505 BGIBMGA007436 ACYPI006177 GB10491 AGAP010139 AAEL001869 PB22586 PHUM333140 GLEAN_06343
Stocks & Reagents
Stocks Listed in FlyBase ( 16 )
Bloomington	1548 bur1 cn1 244 bur1 fs(2)E11/SM5 31055 y1 v1; P{TRiP.JF01503}attP2 10174 y1 w67c23; P{lacW}burk07130/CyO 34889 y1 sc* v1; P{TRiP.HMS01234}attP2 20250 y1 w67c23; P{EPgy2}burEY11080/CyO
Kyoto	106378 bur1 cn1 105811 bur1 fs(2)E11/SM5 102531 y1 w67c23 ; P{lacW}burk07130 / CyO
VDRC	v106467 P{KK102735}VIE-260B v24152 w1118; P{GD13797}v24152 v24153 w1118; P{GD13797}v24153
	More stocks available...
Genomic Clones ( 2 )
	BACR24F17 BACR34H23 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 127 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD42771
Other clones	MIP06849
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH11061 GH21567 GM04061 GM19530 GM25541 LD04012 LD09612 LD10169 LD10320 LD11458 LD11745 LD12258 LD12259 LD12772 LD13139 LD13561 LD13625 LD13825 LD15158 LD18907 LD20606 LD20633 LD21605 LD21738 LD23117 LD27233 LD28179 LD41766 LD43785 LD46924 LP20016 LP21743 RE03384 RE07288 RE15755 RE16066 RE16151 RE16749 RE16779 RE18382 RE19223 RE24004 RE39439 RE40771 RE41809 RE42604 RE51048 RE53224 RE54553 RE56794 RE63473 RE64821 RE65707 RE66070 SD01127 SD13805 SD20252 SD20292
Other clones	10825 43374 50980 82146 121667 146670 159540 175546 183865 214275.12 534044 569189 CK01.141A.G3 CK01.170B.F5 Dmel_neb_000731_0925_3660 Dmel_neb_014225_0096_1727 EK104423 EK116926 EK162845 EK168506 EK176746 EK224562 EK241635 EK249323 EK262640 EK280049 EK288917 EN10143 EN13108 EN14718 EP12045 FGH105E07 FGM001F07 RP003049737 RP003065302 RP003084746 RP003093666 RP003114524 RP003142035 RP003161736 RP003167595 RP003182350 RP003182760 RP003195802 RP003206166 RP003301488 RP003304083 RP003309322 RP003321843 RP003325858 RP003329200 RP003335395 RP003336424 RP003337990 RP003349096 RP003391690 RP003404546 RP003432657 RP003459154 RP003488606 RP003495757 RP003501550 RP003515609 RP003525144 RP003529190 RP003563774 RP003578558
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0000239 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 45830
Antibody Information
	polyclonal (van der Knaap et al., 2010)
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: bur anon-WO0118547.193 anon-WO0118547.204 (FlyBase, 1996-) Source for merge of: bur CG9242 (Strub, 2001.8.10) Source for merge of: bur l(2)10523 (Carpenter, 1998.8.17)
Additional comments	snoRNA:bur-a is encoded in an intron of bur. (Graveley et al., 2011) "CG9242" may correspond to "Scim19". Sequence analysis off ends of P{SUPor-P} in Scim insertion mutant places "Scim19" near/in "CG9241" or "CG9242". (Dobie and Karpen, 2001.4.18) Source for merge of bur anon-WO0118547.193 anon-WO0118547.204 was sequence comparison (date:051113). (FlyBase, 1996-) Not allelic to lt, ltd or pr. (Meyer and Edmondson, 1949) Not allelic to lt, ltd, or pr.
Other Comments
	bur is required for normal photoreceptor axon guidance in the developing visual system. (Long et al., 2006) Area matching Drosophila EST AA391495. (Davies, 2001.3.15, Davies, 2001.3.15) Area matching Drosophila EST AI114266. This EST forms a 1141bp contig with ESTs AA949325, AA735675 and AA391495, and has sequence similarity to GMP synthase genes. (Davies, 2001.3.15) Area matching Drosophila EST AA439099. This EST forms a 1132bp contig with ESTs AA9493425 and AA940848. ESTs have sequence similarity to GMP synthase genes. (Davies, 2001.3.15) 15 "ES2-2" alleles of bur have been isolated in a screen for dominant modifiers of the sinaGMR.PN eye phenotype. (Neufeld et al., 1998) Mutants isolated in a screen of the second chromosome identifying genes affecting disc morphology. (Roch et al., 1998)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_138759 RefSeq (Proteins) • NP_620114 DDBJ / EMBL / GenBank • AA391495 AA439099 AAF53975 AAL71891 AAM49941 AF015270 AI114266 AI516741 AQ073622 AQ074092 AW943625 AX094012 AX094069 AX094080 AX094086 AY118572 CL844396 G00613 Entrez Gene - A searchable database of RefSeq genes. • 45830 UniProtKB/TrEMBL • Q8WSN4 Q9VIE7
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • GMP synthase, C-terminal (IPR001674) GMP synthase, N-terminal (IPR004739) Anthranilate synthase component II/delta crystallin (IPR006220) Glutamine amidotransferase superfamily (IPR011702) Rossmann-like alpha/beta/alpha sandwich fold (IPR014729) Glutamine amidotransferase type 1 (IPR017926) NAD/GMP synthase (IPR022310)
Linkouts
	BioGRID - A database of protein and genetic interactions • 69912 DroID - A comprehensive database of gene and protein interactions. • FBgn0000239 DRSC - Results from RNAi screens. • FBgn0000239 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0000239 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9242-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0000239 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 45830 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 45830 modMine - Data generated by the modENCODE project. • FBgn0000239 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV15300 LH24096 ISCW018543 FBgn0230703 FBgn0223103 FBgn0206743 FBgn0193069 FBgn0178135 JGI_V11_308688 FBgn0081622 FBgn0163442 FBgn0140736 FBgn0117781 FBgn0113694 FBgn0092177 CPIJ000505 BGIBMGA007436 ACYPI006177 GB10491 AGAP010139 AAEL001869 PB22586 PHUM333140 GLEAN_06343
Synonyms & Secondary IDs ( 13 )
Reported As
Symbol Synonym	anon-WO0118547.193   anon-WO0118547.204   bur (Long et al., 2006, Graveley et al., 2011) CG9242 (Dobie and Karpen, 2001.4.18, Keleman et al., 2009.8.5, Ni et al., 2008, Ni et al., 2011.7.19) ES2-2 (Neufeld et al., 1998) GMPS (van der Knaap et al., 2005, Schuettengruber, 2006) Gmps (van der Knaap et al., 2010) gua2   l(2)10523 (Liebl, 1999, ) P174 (Liebl, 1999)
Name Synonym	burgundy   Enhancer of GMR-sina 2-2 (Neufeld et al., 1998) GMP synthetase (van der Knaap et al., 2010)
Secondary FlyBase IDs
	FBgn0010666 FBgn0032928 FBgn0062173 FBgn0062180
References ( 45 )
Generate a list of	All references relating to this gene ( 45 )
List References by type	Research paper  ( 12 ) Supplementary material  ( 5 ) Review  ( 1 ) Personal communication to FlyBase  ( 11 ) Abstract  ( 2 ) FlyBase analysis  ( 3 ) Patent  ( 1 ) DNA/RNA sequence record  ( 4 ) Computer file  ( 3 ) Curated genome annotation  ( 1 ) Book  ( 2 )
Recent research papers ( 1 )
	van der Knaap et al., 2010, Mol. Cell. Biol. 30(3): 736--744 Biosynthetic enzyme GMP synthetase cooperates with ubiquitin-specific protease 7 in transcriptional regulation of ecdysteroid target genes. [FBrf0209736] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2010 Show reviews ...