A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\da

General Information
SymbolDmel\daSpeciesD. melanogaster
NamedaughterlessAnnotation symbolCG5102
Feature typeprotein_coding_geneFlyBase IDFBgn0000413
Gene Model StatusCurrent Stock availability 12 publicly available
Genomic Location
Chromosome (arm)2LRecombination map2-41.3
Cytogenetic map31D11-31E1Sequence location2L:10,388,078..10,392,786 [+]

Genomic Maps

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Automatically generated summary

See sections below for more information
The gene daughterless is referred to in FlyBase by the symbol Dmel\da (CG5102, FBgn0000413). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: RNA polymerase II regulatory region sequence-specific DNA binding; sequence-specific DNA binding transcription factor activity; protein heterodimerization activity; protein homodimerization activity; RNA polymerase II regulatory region DNA binding; transcription factor binding; sequence-specific DNA binding; sequence-specific DNA binding RNA polymerase II transcription factor activity; RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription. There is experimental evidence that it is involved in the biological process: somatic stem cell maintenance; chaeta morphogenesis; oogenesis; positive regulation of transcription, DNA-dependent; positive regulation of transcription from RNA polymerase II promoter; sensory organ development; neuroendocrine cell differentiation; response to DNA damage stimulus; neurogenesis. 62 alleles are reported. The phenotypes of these alleles are annotated with: organ system; organ system subdivision; germarium; nervous system; presumptive embryonic/larval nervous system; late extended germ band embryo; primordium; female germline cyst; extended germ band embryo; non-connected developing system. It has one annotated transcript and one annotated polypeptide. Protein features are: Helix-loop-helix DNA-binding. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult spermathecae, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1625386_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of da. Gene sequence location is 2L:10388078..10392786.

External Summaries
hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
da: daughterless (C. Cronmiller and T.W. Cline)
da+ performs multiple roles during development. Maternally supplied da+ is required in female embryos as a positive activator of the gene, Sex-lethal (Sxl), the key binary switch gene for the sex determination pathway. Also, da+ expression is required in the somatic gonad of adult females for proper egg membrane formation, and hence for the survival of all progeny regardless of their sex. Embryonic expression of da+ is required in both sexes for the formation of the peripheral nervous system (PNS) and parts of the central nervous system (CNS). And, during larval and/or pupal stages, da+ may be required for the growth and/or differentiation of cells that form the adult cuticle. Amorphic alleles (da2, da3, da5, etc.) are recessive lethals, with a lethal period which is predominantly embryonic (Cronmiller and Cline, 1987; Caudy et al., 1988a). In addition, the hypomorphic allele, da1 (originally called da), is hemizygous [da1/Df(2L)da-] lethal (Mange and Sandler, 1973), and da1 homozygotes die when they undergo the first half of embryonic development at 29 (Cline, 1976). Death appears to be a consequence of dosage compensation defects (Cline, 1983a; Gergen, 1987). Viability of da1 homozygotes is improved by the presence of extra X or Y heterochromatin in either the parental female or her progeny (Sandler, 1972; Mason, 1973). Temperature-sensitive lethality of the da1 zygotic lethal effect is not affected by the Sxl genotype (Cline, 1980). da+ is not required in the germline, since da-(da2/da3) pole cells produce fertile gametes; however, mitotic recombination failed to yield significant da-(da2 or da3) somatic clones, suggesting da+ may be essential during epidermal development (Cronmiller and Cline, 1987). Embryos, homozygous for lethal da alleles, have a reduced CNS, lack all peripheral neurons, and have no external sensory structures (Caudy et al., 1988a). Adult flies heterozygous for a deletion of the achaete-scute (ASC) genes and simultaneously heterozygous for Df(da) (also da2/+ or da5/+) exhibit characteristic bristle defects (Dambly-Chaudiere et al., 1988). Hemizygosity for da+ reduces the number of supernumerary bristles in Hw mutants (Dambly-Chaudiere et al., 1988). In addition to its zygotic phenotype, da1 exhibits two separable maternal effects. There is a female-specific maternal effect: At 22 and 25, homozygous da1 females produce no daughters, while at 18, they produce approximately 20% as many daughters as sons (Cline, 1976). At 29, da1 displays a sex-nonspecific maternal effect. Homozygous females are reversibly sterile; they lay eggs that show little or no development (Cline, 1976). Sterility of da1 females at high temperature results from a defect in the somatic gonad rather than in the germline, since da- germ cells in wild-type ovaries produce normal eggs which support full viability of sons (Cronmiller and Cline, 1987). The female-specific maternal effect has a temperature-sensitive period which includes the last 60 hr of oogenesis and the first 3 hr of development (Cline, 1976). This maternal effect is also observed in crosses of da1 females to D. simulans males (Watanabe and Yamada, 1977). The female-lethal maternal effect is autonomous to the germline, as demonstrated by transplantation of da1, or da2/da3 pole cells into + hosts (Cline, 1983b; Cronmiller and Cline, 1987). Female zygotes from da1 mothers at 25 die as embryos. Such lethal female embryos show consistent abnormalities in midgut formation, and in about 50% of the abnormal embryos, shortening of the germ band fails, while anus and posterior spiracles open on the dorsal surface behind the head segments (Counce). Female embryos from da1 mothers also show consistent defects in the CNS, which is either reduced in width or shows abrupt bends or twists; abnormally formed gut often extends into the CNS (Caudy et al., 1988a). The majority of daughters of da1 mothers surviving at 18 are morphologically abnormal, often missing structures from one or more imaginal discs or abdominal histoblasts, and frequently with duplication of structures (Cline, 1976). Though it was reported that daughters of homozygous da1 females could be rescued by cytoplasmic injection (Bownes et al., 1977), the apparent rescue was subsequently found to result from nonspecific effects that may have slowed the early development of females who are on the threshold of surviving (Cline, 1984; see also Muir and Bell, 1987). Gynandromorphs can survive the lethal maternal effects, but there is no localized lethal focus. Diplo-X tissue develops abnormally alongside normally developing haplo-X tissue. Survival of the mosaics and their average fraction of diplo-X tissue increases with decreasing temperature (Cline, 1976). The da1 maternal effect masculinizes escaper daughters that are homozygous for mle (Cline, 1984) and masculinizes triploid intersex (XXAAA) progeny (Cline, 1983a). Females heterozygous for Sxl alleles that lead to male development develop as sterile males, mosaic intersexes, or sterile females (depending on the Sxl allele), when produced by da1 mothers (Cline, 1984). The da1 female lethal maternal effect is unaffected by tra or dsx (Bell, 1954; Colainne and Bell, 1968). However, daughters of da1/da1 mothers are almost fully rescued by a single zygotic dose of SxlM1 and to a limited degree by a duplication for Sxl+ (Cline, 1978). Conversely, zygotic Sxl- enhances the da maternal effect. Females with reduced Sxl dose (Sxl-/+) fail to survive from da1/da1 mothers at the semipermissive 18 (Cline, 1978). A strong dominant da maternal effect [da1/+, Df(2L)da/+, or da2/+ mothers] is observed when female progeny are doubly heterozygous for Sxl- and sis-a- (Cline, 1986, Genetics 113: 641-63; Cronmiller and Cline, 1986, 1987). The maternal effect of da1 is made semidominant also by E(da) (cis or trans to da1) in the mother (Mange and Sandler, 1973; see also Cline, 1980). The zygotic da+ dose itself does not affect expression of Sxl+ sex determination function (Cronmiller and Cline, 1986).
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FB2011_10
Controlled Vocabulary Terms
References
Clones
FB2012_01
References
Sequence features
Controlled Vocabulary Terms
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
31D11-31E1  
Limits computationally determined from genome sequence between P{lacW}RnrLk06709 and P{lacW}KdelRk00311  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
31E-31E  
(determined by in situ hybridisation)  
31E-31E  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
2-41.3
 
2-39.3
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\da for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0080051 FBtr0080007 FBtr0080008 FBtr0080050 FBpp0079641 FBpp0079597 FBpp0079598 FBpp0079640 FBti0058523 FBti0014279 FBti0041102 FBti0109778 FBti0047377 FBti0026309 FBti0017170 FBti0124718_2 FBti0124718_1
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0080008
  3188
  710
Additional Transcript Data & Comments
Reported size (kB)
3.4, 3.2, 2.954 (longest cDNA)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
da-PA  
FBpp0079598  
73.9  
710  
7.08  
Additional Polypeptide Data & Comments
Reported size (kDa)
710 (aa); 74 (kD predicted)
82 (kD observed); 74 (kD predicted)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
insertion site
springer{}da[lyh]
2L:10,388,640..10,388,640
comment=Insertion of a 7.5kb springer element 113bp into the da intron, producing a characteristic TATA target site duplication. The springer element is inserted in the opposite orientation to the direction of da transcription.
evidence=experimental
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Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Both da transcripts are present at constant proportion in all stages of development. The 3.2 kb transcript is slightly overrepresented in 0-2.5 hr embryos (in comparison to other developmental stages).
There are two phases of da expression during oogenesis. In the first phase, da transcripts are detected throughout the germarium and in all egg chambers in both germ line and the somatic cells until approximately stage S3. After stage S3, transcripts are not detected in the germ line and are detected at low levels in the follicle cells. The late expression phase starts in stage S8 at which point strong expression is observed in the germ line in the nurse cells and increases until late stage 10. At that point transfer of da transcripts to the oocyte is initiated. Weak expression continues to be observed in follicle cells.
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
western blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
da protein is observed in the nuclei of most cells during embryogenesis but is not present in pole cells. da protein is present throughout the preblastoderm embryo and disappears before blastoderm formation. Protein levels increase again before germ band extension and reach maximal levels during stages 9-11. da protein is present in ectodermal cells as well as in putative neuroblasts during the process of neuroblast delamination and after. The levels of da protein are fairly uniform across the ectodermal layer. Neuronal precursors, however, appear to have elevated levels of da protein. da protein expression is reduced in most tissue types during germ band retraction. At later stages higher levels of da protein are seen n particular tissues including a subset of CNS cells, salivary glands, and parts of the gut and muscles. In wing imagingal discs, a uniform level of da protein is observed in all epidermal cells. An elevated protein level is observed in some neuronal precursor cells. In leg discs, elevated da protein levels are seen in the large cluster of SOPS that will later form the chordotonal organ. In eye discs, elevated da protein levels are seen in cells posterior to the morphogenetic furrow that are thought to correspond to R8 cells.
da protein expression is first seen as a dorsoventral stripe, several cells wide, at the anterior side of the morphogenetic furrow that quickly resolves into expression in single cells within the 2-3 ommatidial rows in the posterior portion of the furrow. The single da-expressing cells appear to be R8 cells. da protein expression exactly corresponds with ato protein expression.
da protein is widely distributed throughout the somatic component of the ovary. Expression is first observed in prefollicular cells and follicle cells from germarium region 2 until stage S3. The most intense staining is seen at the anterior portion of the germarium at stage 3 as a nascent follicle is ready to pinch off from the germarium. In egg chambers through stage S3, da protein expression is maintained in all the nuclei of follicular epithelial cells. Protein levels diminish in the follicular epithelium thereafter. Throughout egg chamber maturation, expression is observed in interfollicular stalk cells and interfollicular polar cells. In stage S9 and beyond, uniform levels of da protein are observed in all follicle cells.
da protein is detected at all developmental stages on western blots. Peak levels are observed in 5-12hr embryos. da protein was found to be expressed continuously and ubiquitously during embryogenesis by immunolocalization. In later stages, protein levels are highest in the supraoesophageal ganglion, the ventral cord and the salivary gland. The only nuclei that appear not to contain da protein are the vitellophages. In larvae, the highest levels of da protein are observed in the imaginal discs (eye-antenna, wing, leg, haltere, and labial), in salivary glands, and in a subset of cells in the CNS. During oogenesis, da protein is detected in follicle cells but not in the germline. Finally, da protein is detected in male gona s. In the testis, light staining is observed in apically located cells and heavy staining is observed in somatic cyst cells and in terminal epithelial cells. Intense staining is also observed in the seminal vescicle and the anterior ejaculatory duct epithelia.
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view mRpS7-RA da-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0000413


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0000413
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, in adult female stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0000413 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 7890
embryo 02-04hr
 
 4793
embryo 04-06hr
 
 5780
embryo 06-08hr
 
 6396
embryo 08-10hr
 
 4235
embryo 10-12hr
 
 5021
embryo 12-14hr
 
 3065
embryo 14-16hr
 
 2644
embryo 16-18hr
 
 2371
embryo 18-20hr
 
 2880
embryo 20-22hr
 
 1778
embryo 22-24hr
 
 1497
larva L1
 
 1534
larva L2
 
 955
larva L3 12hr old
 
 885
larva L3 puffstage 1-2
 
 1063
larva L3 puffstage 3-6
 
 2063
larva L3 puffstage 7-9
 
 2404
white prepupae new
 
 2806
white prepupae 12hr
 
 2688
white prepupae 24hr
 
 2693
pupae 2d postWPP
 
 1863
pupae 3d postWPP
 
 1268
pupae 4d postWPP
 
 1597
adult male 01day
 
 1412
adult male 05day
 
 1728
adult male 30day
 
 1773
adult female 01day
 
 2948
adult female 05day
 
 3993
adult female 30day
 
 4504
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (7890)
embryo 02-04hr
 (4793)
embryo 04-06hr
 (5780)
embryo 06-08hr
 (6396)
embryo 08-10hr
 (4235)
embryo 10-12hr
 (5021)
embryo 12-14hr
 (3065)
embryo 14-16hr
 (2644)
embryo 16-18hr
 (2371)
embryo 18-20hr
 (2880)
embryo 20-22hr
 (1778)
embryo 22-24hr
 (1497)
larva L1
 (1534)
larva L2
 (955)
larva L3 12hr old
 (885)
larva L3 puffstage 1-2
 (1063)
larva L3 puffstage 3-6
 (2063)
larva L3 puffstage 7-9
 (2404)
white prepupae new
 (2806)
white prepupae 12hr
 (2688)
white prepupae 24hr
 (2693)
pupae 2d postWPP
 (1863)
pupae 3d postWPP
 (1268)
pupae 4d postWPP
 (1597)
adult male 01day
 (1412)
adult male 05day
 (1728)
adult male 30day
 (1773)
adult female 01day
 (2948)
adult female 05day
 (3993)
adult female 30day
 (4504)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (7890)
embryo 02-04hr
 (4793)
embryo 04-06hr
 (5780)
embryo 06-08hr
 (6396)
embryo 08-10hr
 (4235)
embryo 10-12hr
 (5021)
embryo 12-14hr
 (3065)
embryo 14-16hr
 (2644)
embryo 16-18hr
 (2371)
embryo 18-20hr
 (2880)
embryo 20-22hr
 (1778)
embryo 22-24hr
 1497
larva L1
 (1534)
larva L2
 
 955
larva L3 12hr old
 
 885
larva L3 puffstage 1-2
 
 1063
larva L3 puffstage 3-6
 (2063)
larva L3 puffstage 7-9
 (2404)
white prepupae new
 (2806)
white prepupae 12hr
 (2688)
white prepupae 24hr
 (2693)
pupae 2d postWPP
 (1863)
pupae 3d postWPP
 
 1268
pupae 4d postWPP
 (1597)
adult male 01day
 1412
adult male 05day
 (1728)
adult male 30day
 (1773)
adult female 01day
 (2948)
adult female 05day
 (3993)
adult female 30day
 (4504)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 7890
embryo 02-04hr
 
 4793
embryo 04-06hr
 
 5780
embryo 06-08hr
 
 6396
embryo 08-10hr
 
 4235
embryo 10-12hr
 
 5021
embryo 12-14hr
 
 3065
embryo 14-16hr
 
 2644
embryo 16-18hr
 
 2371
embryo 18-20hr
 
 2880
embryo 20-22hr
 
 1778
embryo 22-24hr
 
 1497
larva L1
 
 1534
larva L2
 
 955
larva L3 12hr old
 
 885
larva L3 puffstage 1-2
 
 1063
larva L3 puffstage 3-6
 
 2063
larva L3 puffstage 7-9
 
 2404
white prepupae new
 
 2806
white prepupae 12hr
 
 2688
white prepupae 24hr
 
 2693
pupae 2d postWPP
 
 1863
pupae 3d postWPP
 
 1268
pupae 4d postWPP
 
 1597
adult male 01day
 
 1412
adult male 05day
 
 1728
adult male 30day
 
 1773
adult female 01day
 
 2948
adult female 05day
 
 3993
adult female 30day
 
 4504
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 7890
embryo 02-04hr
 
 4793
embryo 04-06hr
 
 5780
embryo 06-08hr
 
 6396
embryo 08-10hr
 
 4235
embryo 10-12hr
 
 5021
embryo 12-14hr
 
 3065
embryo 14-16hr
 
 2644
embryo 16-18hr
 
 2371
embryo 18-20hr
 
 2880
embryo 20-22hr
 
 1778
embryo 22-24hr
 
 1497
larva L1
 
 1534
larva L2
 
 955
larva L3 12hr old
 
 885
larva L3 puffstage 1-2
 
 1063
larva L3 puffstage 3-6
 
 2063
larva L3 puffstage 7-9
 
 2404
white prepupae new
 
 2806
white prepupae 12hr
 
 2688
white prepupae 24hr
 
 2693
pupae 2d postWPP
 
 1863
pupae 3d postWPP
 
 1268
pupae 4d postWPP
 
 1597
adult male 01day
 
 1412
adult male 05day
 
 1728
adult male 30day
 
 1773
adult female 01day
 
 2948
adult female 05day
 
 3993
adult female 30day
 
 4504
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0000413 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 7890
embryo 02-04hr
 
 4793
embryo 04-06hr
 
 5780
embryo 06-08hr
 
 6396
embryo 08-10hr
 
 4235
embryo 10-12hr
 
 5021
embryo 12-14hr
 
 3065
embryo 14-16hr
 
 2644
embryo 16-18hr
 
 2371
embryo 18-20hr
 
 2880
embryo 20-22hr
 
 1778
embryo 22-24hr
 
 1497
larva L1
 
 1534
larva L2
 
 955
larva L3 12hr old
 
 885
larva L3 puffstage 1-2
 
 1063
larva L3 puffstage 3-6
 
 2063
larva L3 puffstage 7-9
 
 2404
white prepupae new
 
 2806
white prepupae 12hr
 
 2688
white prepupae 24hr
 
 2693
pupae 2d postWPP
 
 1863
pupae 3d postWPP
 
 1268
pupae 4d postWPP
 
 1597
adult male 01day
 
 1412
adult male 05day
 
 1728
adult male 30day
 
 1773
adult female 01day
 
 2948
adult female 05day
 
 3993
adult female 30day
 
 4504
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (7890)
embryo 02-04hr
 (4793)
embryo 04-06hr
 (5780)
embryo 06-08hr
 (6396)
embryo 08-10hr
 (4235)
embryo 10-12hr
 (5021)
embryo 12-14hr
 (3065)
embryo 14-16hr
 (2644)
embryo 16-18hr
 (2371)
embryo 18-20hr
 (2880)
embryo 20-22hr
 (1778)
embryo 22-24hr
 (1497)
larva L1
 (1534)
larva L2
 (955)
larva L3 12hr old
 (885)
larva L3 puffstage 1-2
 (1063)
larva L3 puffstage 3-6
 (2063)
larva L3 puffstage 7-9
 (2404)
white prepupae new
 (2806)
white prepupae 12hr
 (2688)
white prepupae 24hr
 (2693)
pupae 2d postWPP
 (1863)
pupae 3d postWPP
 (1268)
pupae 4d postWPP
 (1597)
adult male 01day
 (1412)
adult male 05day
 (1728)
adult male 30day
 (1773)
adult female 01day
 (2948)
adult female 05day
 (3993)
adult female 30day
 (4504)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (7890)
embryo 02-04hr
 (4793)
embryo 04-06hr
 (5780)
embryo 06-08hr
 (6396)
embryo 08-10hr
 (4235)
embryo 10-12hr
 (5021)
embryo 12-14hr
 (3065)
embryo 14-16hr
 (2644)
embryo 16-18hr
 2371
embryo 18-20hr
 (2880)
embryo 20-22hr
 1778
embryo 22-24hr
 1497
larva L1
 1534
larva L2
 
 955
larva L3 12hr old
 
 885
larva L3 puffstage 1-2
 
 1063
larva L3 puffstage 3-6
 2063
larva L3 puffstage 7-9
 2404
white prepupae new
 (2806)
white prepupae 12hr
 (2688)
white prepupae 24hr
 (2693)
pupae 2d postWPP
 1863
pupae 3d postWPP
 
 1268
pupae 4d postWPP
 1597
adult male 01day
 1412
adult male 05day
 1728
adult male 30day
 1773
adult female 01day
 (2948)
adult female 05day
 (3993)
adult female 30day
 (4504)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 7890
embryo 02-04hr
 
 4793
embryo 04-06hr
 
 5780
embryo 06-08hr
 
 6396
embryo 08-10hr
 
 4235
embryo 10-12hr
 
 5021
embryo 12-14hr
 
 3065
embryo 14-16hr
 
 2644
embryo 16-18hr
 
 2371
embryo 18-20hr
 
 2880
embryo 20-22hr
 
 1778
embryo 22-24hr
 
 1497
larva L1
 
 1534
larva L2
 
 955
larva L3 12hr old
 
 885
larva L3 puffstage 1-2
 
 1063
larva L3 puffstage 3-6
 
 2063
larva L3 puffstage 7-9
 
 2404
white prepupae new
 
 2806
white prepupae 12hr
 
 2688
white prepupae 24hr
 
 2693
pupae 2d postWPP
 
 1863
pupae 3d postWPP
 
 1268
pupae 4d postWPP
 
 1597
adult male 01day
 
 1412
adult male 05day
 
 1728
adult male 30day
 
 1773
adult female 01day
 
 2948
adult female 05day
 
 3993
adult female 30day
 
 4504
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 7890
embryo 02-04hr
 
 4793
embryo 04-06hr
 
 5780
embryo 06-08hr
 
 6396
embryo 08-10hr
 
 4235
embryo 10-12hr
 
 5021
embryo 12-14hr
 
 3065
embryo 14-16hr
 
 2644
embryo 16-18hr
 
 2371
embryo 18-20hr
 
 2880
embryo 20-22hr
 
 1778
embryo 22-24hr
 
 1497
larva L1
 
 1534
larva L2
 
 955
larva L3 12hr old
 
 885
larva L3 puffstage 1-2
 
 1063
larva L3 puffstage 3-6
 
 2063
larva L3 puffstage 7-9
 
 2404
white prepupae new
 
 2806
white prepupae 12hr
 
 2688
white prepupae 24hr
 
 2693
pupae 2d postWPP
 
 1863
pupae 3d postWPP
 
 1268
pupae 4d postWPP
 
 1597
adult male 01day
 
 1412
adult male 05day
 
 1728
adult male 30day
 
 1773
adult female 01day
 
 2948
adult female 05day
 
 3993
adult female 30day
 
 4504
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0000413


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0000413
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult spermathecae, adult male reproductive system, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0000413 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 480.925
Larval Midgut
 
 322.2
Larval Hindgut
 
 330.6
Larval Malpighian Tubules
 
 288.9
Larval Fat Body
 
 301.9
Larval Salivary Gland
 
 391.8
Larval Trachea
 
 400.425
Larval Carcass
 
 332.85
Adult Head
 
 278.7
Adult Eye
 
 369.75
Adult Brain
 
 466
Adult Thoracic-Abdominal Ganglion
 
 354.3
Adult Crop
 
 367.5
Adult Midgut
 
 283.4
Adult Hindgut
 
 272.1
Adult Malpighian Tubules
 
 215.2
Adult Fat Body
 
 234.5
Adult Salivary Gland
 
 363.7
Adult Heart
 
 256.3
Adult VirginFemale Spermatheca
 
 387.6
Adult InseminatedFemale Spermatheca
 
 490
Adult Ovary
 
 754.8
Adult Testis
 
 233.2
Adult Male Accessory Gland
 
 380.1
Adult Carcass
 
 211.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 480.925
Larval Midgut
 
 322.2
Larval Hindgut
 
 330.6
Larval Malpighian Tubules
 
 288.9
Larval Fat Body
 
 301.9
Larval Salivary Gland
 
 391.8
Larval Trachea
 
 400.425
Larval Carcass
 
 332.85
Adult Head
 
 278.7
Adult Eye
 
 369.75
Adult Brain
 
 466
Adult Thoracic-Abdominal Ganglion
 
 354.3
Adult Crop
 
 367.5
Adult Midgut
 
 283.4
Adult Hindgut
 
 272.1
Adult Malpighian Tubules
 
 215.2
Adult Fat Body
 
 234.5
Adult Salivary Gland
 
 363.7
Adult Heart
 
 256.3
Adult VirginFemale Spermatheca
 
 387.6
Adult InseminatedFemale Spermatheca
 
 490
Adult Ovary
 (754.8)
Adult Testis
 
 233.2
Adult Male Accessory Gland
 
 380.1
Adult Carcass
 
 211.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 480.925
Larval Midgut
 
 322.2
Larval Hindgut
 
 330.6
Larval Malpighian Tubules
 
 288.9
Larval Fat Body
 
 301.9
Larval Salivary Gland
 
 391.8
Larval Trachea
 
 400.425
Larval Carcass
 
 332.85
Adult Head
 
 278.7
Adult Eye
 
 369.75
Adult Brain
 
 466
Adult Thoracic-Abdominal Ganglion
 
 354.3
Adult Crop
 
 367.5
Adult Midgut
 
 283.4
Adult Hindgut
 
 272.1
Adult Malpighian Tubules
 
 215.2
Adult Fat Body
 
 234.5
Adult Salivary Gland
 
 363.7
Adult Heart
 
 256.3
Adult VirginFemale Spermatheca
 
 387.6
Adult InseminatedFemale Spermatheca
 
 490
Adult Ovary
 
 754.8
Adult Testis
 
 233.2
Adult Male Accessory Gland
 
 380.1
Adult Carcass
 
 211.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 480.925
Larval Midgut
 
 322.2
Larval Hindgut
 
 330.6
Larval Malpighian Tubules
 
 288.9
Larval Fat Body
 
 301.9
Larval Salivary Gland
 
 391.8
Larval Trachea
 
 400.425
Larval Carcass
 
 332.85
Adult Head
 
 278.7
Adult Eye
 
 369.75
Adult Brain
 
 466
Adult Thoracic-Abdominal Ganglion
 
 354.3
Adult Crop
 
 367.5
Adult Midgut
 
 283.4
Adult Hindgut
 
 272.1
Adult Malpighian Tubules
 
 215.2
Adult Fat Body
 
 234.5
Adult Salivary Gland
 
 363.7
Adult Heart
 
 256.3
Adult VirginFemale Spermatheca
 
 387.6
Adult InseminatedFemale Spermatheca
 
 490
Adult Ovary
 
 754.8
Adult Testis
 
 233.2
Adult Male Accessory Gland
 
 380.1
Adult Carcass
 
 211.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0000413 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 480.925
Larval Midgut
 
 322.2
Larval Hindgut
 
 330.6
Larval Malpighian Tubules
 
 288.9
Larval Fat Body
 
 301.9
Larval Salivary Gland
 
 391.8
Larval Trachea
 
 400.425
Larval Carcass
 
 332.85
Adult Head
 
 278.7
Adult Eye
 
 369.75
Adult Brain
 
 466
Adult Thoracic-Abdominal Ganglion
 
 354.3
Adult Crop
 
 367.5
Adult Midgut
 
 283.4
Adult Hindgut
 
 272.1
Adult Malpighian Tubules
 
 215.2
Adult Fat Body
 
 234.5
Adult Salivary Gland
 
 363.7
Adult Heart
 
 256.3
Adult VirginFemale Spermatheca
 
 387.6
Adult InseminatedFemale Spermatheca
 
 490
Adult Ovary
 
 754.8
Adult Testis
 
 233.2
Adult Male Accessory Gland
 
 380.1
Adult Carcass
 
 211.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 480.925
Larval Midgut
 
 322.2
Larval Hindgut
 
 330.6
Larval Malpighian Tubules
 
 288.9
Larval Fat Body
 
 301.9
Larval Salivary Gland
 
 391.8
Larval Trachea
 
 400.425
Larval Carcass
 
 332.85
Adult Head
 
 278.7
Adult Eye
 
 369.75
Adult Brain
 
 466
Adult Thoracic-Abdominal Ganglion
 
 354.3
Adult Crop
 
 367.5
Adult Midgut
 
 283.4
Adult Hindgut
 
 272.1
Adult Malpighian Tubules
 
 215.2
Adult Fat Body
 
 234.5
Adult Salivary Gland
 
 363.7
Adult Heart
 
 256.3
Adult VirginFemale Spermatheca
 
 387.6
Adult InseminatedFemale Spermatheca
 
 490
Adult Ovary
 754.8
Adult Testis
 
 233.2
Adult Male Accessory Gland
 
 380.1
Adult Carcass
 
 211.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 480.925
Larval Midgut
 
 322.2
Larval Hindgut
 
 330.6
Larval Malpighian Tubules
 
 288.9
Larval Fat Body
 
 301.9
Larval Salivary Gland
 
 391.8
Larval Trachea
 
 400.425
Larval Carcass
 
 332.85
Adult Head
 
 278.7
Adult Eye
 
 369.75
Adult Brain
 
 466
Adult Thoracic-Abdominal Ganglion
 
 354.3
Adult Crop
 
 367.5
Adult Midgut
 
 283.4
Adult Hindgut
 
 272.1
Adult Malpighian Tubules
 
 215.2
Adult Fat Body
 
 234.5
Adult Salivary Gland
 
 363.7
Adult Heart
 
 256.3
Adult VirginFemale Spermatheca
 
 387.6
Adult InseminatedFemale Spermatheca
 
 490
Adult Ovary
 
 754.8
Adult Testis
 
 233.2
Adult Male Accessory Gland
 
 380.1
Adult Carcass
 
 211.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 480.925
Larval Midgut
 
 322.2
Larval Hindgut
 
 330.6
Larval Malpighian Tubules
 
 288.9
Larval Fat Body
 
 301.9
Larval Salivary Gland
 
 391.8
Larval Trachea
 
 400.425
Larval Carcass
 
 332.85
Adult Head
 
 278.7
Adult Eye
 
 369.75
Adult Brain
 
 466
Adult Thoracic-Abdominal Ganglion
 
 354.3
Adult Crop
 
 367.5
Adult Midgut
 
 283.4
Adult Hindgut
 
 272.1
Adult Malpighian Tubules
 
 215.2
Adult Fat Body
 
 234.5
Adult Salivary Gland
 
 363.7
Adult Heart
 
 256.3
Adult VirginFemale Spermatheca
 
 387.6
Adult InseminatedFemale Spermatheca
 
 490
Adult Ovary
 
 754.8
Adult Testis
 
 233.2
Adult Male Accessory Gland
 
 380.1
Adult Carcass
 
 211.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 278.7
 
NA 
Eye
 
 369.75
 
NA 
Brain
 
 466
 
480.925 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 354.3
 
NA 
Crop
 
 367.5
 
322.2 
Midgut
 
 283.4
 
330.6 
Hindgut
 
 272.1
 
288.9 
Malpighian Tubules
 
 215.2
 
301.9 
Fat Body
 
 234.5
 
391.8 
Salivary Gland
 
 363.7
 
NA 
Heart
 
 256.3
 
400.425 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 387.6
 
NA 
InseminatedFemale Spermatheca
 
 490
 
NA 
Ovary
 
 754.8
 
NA 
Testis
 
 233.2
 
NA 
Male Accessory Gland
 
 380.1
 
332.85 
Carcass
 
 211.3

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
lethal (with da1)
lethal (with da7)
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 37 )
For All Classical Alleles Show

Allele of daClassMutagenStocksKnown lesion
da1hypomorphic allele - genetic evidence3 Yes
da10amorphic allele - genetic evidence2 Yes
daBG006431 --
da2loss of function allele, amorphic allele - genetic evidence0 Yes
da3amorphic allele - genetic evidence0 Yes
da5amorphic allele - genetic evidence0 Yes
da6amorphic allele - genetic evidence0 --
daIIP106amorphic allele - genetic evidence, loss of function allele
0 Yes
da110 Yes
da11B60 --
da120 --
da130 --
da140 --
da150 --
da160 --
da170 --
da180 --
da190 --
da200 --
da40 Yes
da5B50 --
da7hypomorphic allele - genetic evidence0 Yes
da80 Yes
da90 Yes
daBG008500 Yes
daBG009630 Yes
daE253-20 --
daE321-60 --
daf75
0 Yes
daKE383hypomorphic allele - genetic evidence
0 Yes
daKE38hypomorphic allele - genetic evidence
0 --
daKX15.1
0 --
daKX90
0 --
dalyhloss of function allele0 Yes
das22hypomorphic allele - genetic evidence0 Yes
daunspecifiedhypomorphic allele - genetic evidence
0 --
daX293-40 --
hide Alleles Carried on Transgenic Constructs ( 25 )
For All Alleles Carried on Transgenic Constructs Show

Allele of daClassMutagenStocksKnown lesion
daGD44402 Yes
daGLV210511 Yes
daJF020921 Yes
daJF024881 Yes
daKK1048001 Yes
da+t7.50 Yes
da+t70 Yes
da+tPa0 --
daAct5C.PC0 Yes
daAct5C.PJ0 Yes
daAct5C.PO0 Yes
daAct5C.PR0 Yes
daAct5C.PV0 Yes
daAct5C.PvD0 Yes
daAct5C.PW0 Yes
daCMV.cCa0 Yes
dada-da.Scer\UAS0 Yes
dadsRNA.cIa0 Yes
dadsRNA.cMa0 Yes
dahb.PD0 Yes
dahs.PF0 Yes
dahs.PH0 Yes
dahs.PSP0 Yes
daN.Act5C0 Yes
daScer\UAS.cGa0 Yes
hide Aneuploid Aberrations
Disrupted in
Not disrupted in
Duplicated in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
heat-shock construct
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap
hide Gene Ontology: Function, Process & Cellular Component ( 29 unique terms )
hide Terms Based on Experimental Evidence ( 20 terms )
Molecular Function
CV term
References
inferred from physical interaction with ac
inferred from physical interaction with amos
inferred from physical interaction with ase
inferred from physical interaction with ato
inferred from physical interaction with emc
inferred from physical interaction with HLH54F
inferred from physical interaction with l(1)sc
inferred from physical interaction with sc
inferred from physical interaction with UniProtKB:P10627
(assigned by UniProtKB)
inferred from physical interaction with amos
inferred from physical interaction with ase
inferred from physical interaction with l(1)sc
inferred from physical interaction with sc
inferred from genetic interaction with HLHm7
inferred from genetic interaction with HLHmγ
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from genetic interaction with sc
inferred from genetic interaction with sens
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component
CV term
References
inferred from direct assay
inferred from physical interaction with l(1)sc
hide Terms Based on Predictions or Assertions ( 13 terms )
Molecular Function
CV term
References
traceable author statement
inferred from sequence or structural similarity with UniProtKB:P15923
non-traceable author statement
Biological Process
CV term
References
traceable author statement
inferred from sequence or structural similarity with UniProtKB:P15923
Cellular Component
CV term
References
inferred from sequence or structural similarity with UniProtKB:P15923
non-traceable author statement
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
da allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 12 )
Bloomington
Kyoto
VDRC
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 80 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
monoclonal
hide Other Information
hide Discoverer
Bell.
 
hide Etymology
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hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
hide Other Comments
da has a role in somatic cell proliferation during oogenesis. da is required for complete differentiation of polar and stalk follicle cells.
Analysis of the function of da.
Dominant interactions indicate that toc is acting in the same signalling pathways for the formation of the egg chamber as da, N and Dl.
Four genes whose products are required for various stages of the cell cycle are misexpressed in the PNS of da mutant embryos.
da is autonomously required for the neurogenesis of all photoreceptor cells that differentiate within the furrow. Both da and ato are independently activated within the eye disc, proper maintenance of both da and ato expression is dependent on the other protein. Loss of da disrupts the progression of the morphogenetic furrow and this effect is mediated by the loss of both hh and dpp. Also da function is necessary for reentry into the cell cycle by cells of the second mitotic wave posterior to the morphogenetic furrow.
Proneural and neurogenic genes control specification and morphogenesis of stomatogastric nerve cell precursors.
E(spl)-complex bHLH proteins interact with proneural proteins, with members of the E(spl) family exhibiting distinct preferences for different proneural proteins.
Immunoprecipitation experiments suggest that sc and da form a heteromeric complex in vivo.
The da gene product exerts a regulatory effect on Sxl expression.
Overexpression of da using the GAL4 system, but not the ectopic expression of the AS-C genes l(1)sc or sc, leads to the formation of ectopic neural cells in embryonic tissue without neural competence. This effect os strongly enhanced by coexpressing l(1)sc or sc. Expression of da and/or l(1)sc is not sufficient to overcome the lateral inhibition in the analgen of the embryonic nervous system.
Transfection assays and in vitro DNA binding experiments indicate that da/sc heterodimers directly activate the Sxl early promoter by binding to both high and low affinity sites. dpn protein represses this activation by specific binding to a unique site within the Sxl early promoter.
fs(1)Yb is required in the soma for ovary follicle cell differentiation and to support later stages of egg maturation. Mutations at fs(1)Yb show genetic interactions with the N group of neurogenic genes.
The yeast two hybrid system has been used to demonstrate specific interactions within the sisA, sc, dpn and da group of gene products, and to delimit their interaction domains. The results support and extend the model of the molecular basis of the X/A ratio signal.
da is required for the survival of salivary gland cells after they invaginate.
emc forms heterodimers with the ac, sc, l(1)sc, and da products. emc inhibits DNA-binding of ac, sc and l(1)sc/da heterodimers and da homodimers.
Proneural gene products (ac, da and l(1)sc) activate transcription of Dl in the neuroectoderm by binding to specific sites within its promoter. This transcriptional activation enhances lateral inhibition and helps ensure that cells in the vicinity of prospective neuroblasts will themselves become epidermoblasts.
DNaseI footprinting analysis of bacterially expressed da and l(1)sc demonstrates that the gene products can bind as heterodimers to different E-box sequence upstream of the ac gene.
A fragment of the D.melanogaster da gene has been used as a probe for in situ hybridisation of Chrysomya rufifacies polytene chromosomes.
da is not required for the initial appearance of nascent neuronal precursors but is required for these cells to express multiple neuronal precursor genes and to produce the normal number of neurons.
Functional analysis of Brer\E12 performed using Drosophila as an in vivo system demonstrates the HLH domain of Brer\E12 can carry out most of the functions performed by the corresponding region of da.
Ten (unnamed) recessive lethal alleles have been isolated during a cytogenetic analysis of chromosomal region 31.
da encodes a nuclear protein that is widely expressed throughout development.
dl gene product interacts with members of the HLH family, including da, ac and sc and dosage sensitive interactions that exist between dl, da, ac, sc and twi are required for the specification of both the embryonic mesoderm and neuroectoderm.
Extra copies of da+ do not effect male lethality of schb.PP.
dpn expression in da mutant embryos has been examined: all neural precursors are abnormal, do not express dpn and produce very few neurons. Later in development dpn is found in some CNS neurons.
Mutations at da, hup and dal loci have no effect on position-effect variegation. Mutant alleles are sensitive to amounts of heterochromatin in the genome.
There is a weak female-specific dominant synergism between run and da mutations.
In cotransfection studies the highest levels of ac expression are achieved when a combination of ac and da or sc expression vectors are present in the cotransfection mixture.
In vitro DNA binding assays using gel retardation to an ac promoter region and hb zygotic promoter region target sequence demonstrates that da protein elicits a weak homodimeric binding and da/ac or da/sc heterodimers bind tightly. Single copy yeast promoters under the control of the GAL4 promoter were used to test whether ac, sc and da proteins could activate transcription of a Ecol\lacZ reporter gene in the yeast assay system. da produces slight activation and the presence of da gives strong activation of the reporter gene. Results suggest that da/l(1)sc heterodimers can function as transcriptional activators in direct proportion to their DNA-binding affinities.
sisA gene product acts in combination with maternally encoded products of signal transduction genes, da, which communicate the number of X chromosomes to Sxl and thereby determine sexual fate.
da is required in all regions of the embryo to activate Sxl.
Mutations in maternal class gene da interact with RpII140wimp.
DNA sequence analysis reveals four E box binding sites, for the binding of hetero-oligomeric complexes composed of da or AS-C proteins, in the first 877 bp of the ac upstream region. Electrophoretic mobility shift assays demonstrate that the emc protein can specifically antagonise DNA binding of the da/AS-C complexes in vitro in a dose-dependent manner, h and E(spl) proteins fail to exhibit this inhibitory effect.
da alleles act as enhancers of spl alleles of N.
The da gene product may be capable of functionally complementing the genes of ASC.
Extra wild type copies of da are not sufficient to rescue the female lethality of hhb.PP. da and sc are both required for the induction of Sxl expression.
E12 and E47 binding factors bind to the murine immunoglobulin kappa chain enhancer. These cDNAs show sequence similarity with da.
Defects in neural development caused by mutations in da can be prevented by the presence of mutations in N, bib, mam, neu, Dl amd E(spl).
The lack of interaction between Tpl and Sxl or da suggests that Tpl does not function in measuring the X/A ratio in Drosophila.
Double hemizygotes for the achaete-scute complex and da <up>Df(1)260-1/+; Df(2L)J27/+</up> or the achaete-scute complex and Df(4)M101-62f show loss of macrochaetae, which none of the single hemizygotes does.
Duplications carrying wild type and mutant da alleles have been used to determine the relationship between maternal and zygotic activities of the da locus and whether zygotic functions of da are important in the control of Sxl sex determination activities. Individuals with three doses of da+ show no decrease in viability or fertility. Increasing the maternal and zygotic da+ dose reduces the severity of the recessive lethal effect of mutant da alleles and reducing the maternal da+ dose reduces female lethal maternal effect of mutant da alleles. da+ zygotic function is not involved in Sxl+ regulation: lowered da+ zygotic dose does not reduce Sxl+ expression of sex determination functions.
The interaction between Sxl and da in triploids has been studied.
da+ performs multiple roles during development. Maternally supplied da+ is required in female embryos as a positive activator of the gene, Sex-lethal (Sxl), the key binary switch gene for the sex determination pathway. Also, da+ expression is required in the somatic gonad of adult females for proper egg membrane formation and hence for the survival of all progeny regardless of their sex. Embryonic expression of da+ is required in both sexes for the formation of the peripheral nervous system (PNS) and parts of the central nervous system (CNS). And, during larval and/or pupal stages, da+ may be required for the growth and/or differentiation of cells that form the adult cuticle. Amorphic alleles (da2, da3, da5, etc.) are recessive lethals, with a lethal period which is predominantly embryonic (Cronmiller and Cline, 1987; Caudy et al., 1988). In addition, the hypomorphic allele, da1 (originally called da), is hemizygous (da1/da deficiencies) lethal (Mange and Sandler, 1973), and da1 homozygotes die when they undergo the first half of embryonic development at 29oC (Cline, 1976). Death appears to be a consequence of dosage compensation defects (Cline, 1983a; Gergen, 1987). Viability of da1 homozygotes is improved by the presence of extra X or Y heterochromatin in either the parental female or her progeny (Sandler, 1972; Mason, 1973). Temperature-sensitive lethality of the da1 zygotic lethal effect is not affected by the Sxl genotype (Cline, 1980). da+ is not required in the germ-line, since da- (da2/da3) pole cells produce fertile gametes; however, mitotic recombination failed to yield significant da- (da2 or da3) somatic clones, suggesting da+ may be essential during epidermal development (Cronmiller and Cline, 1987). Embryos, homozygous for lethal da alleles, have a reduced CNS, lack all peripheral neurons and have no external sensory structures (Caudy et al., 1988). Adult flies heterozygous for a deletion of the achaete-scute (ASC) genes and simultaneously heterozygous for Df(da) (also da2/+ or da5/+) exhibit characteristic bristle defects (Dambly-Chaudiere, Ghysen, Jan and Jan 1988). Hemizygosity for da+ reduces the number of supernumerary bristles in Hw mutants (Dambly-Chaudiere, Ghysen, Jan and Jan, 1988). In addition to its zygotic phenotype, da1 exhibits two separable maternal effects. There is a female-specific maternal effect: At 22oC and 25oC, homozygous da1 females produce no daughters, while at 18oC, they produce approximately 20% as many daughters as sons (Cline, 1976). At 29oC, da1 displays a sex-nonspecific maternal effect. Homozygous females are reversibly sterile; they lay eggs that show little or no development (Cline, 1976). Sterility of da1 females at high temperature results from a defect in the somatic gonad rather than in the germ-line, since da- germ cells in wild-type ovaries produce normal eggs which support full viability of sons (Cronmiller and Cline, 1987). The female-specific maternal effect has a temperature-sensitive period which includes the last 60 hr of oogenesis and the first 3 hr of development (Cline, 1976). This maternal effect is also observed in crosses of da1 females to D.simulans males (Watanabe and Yamada, 1977). The female-lethal maternal effect is autonomous to the germ-line, as demonstrated by transplantation of da1, or da2/da3 pole cells into + hosts (Cline, 1983b; Cronmiller and Cline, 1987). Female zygotes from da1 mothers at 25oC die as embryos. Such lethal female embryos show consistent abnormalities in midgut formation, and in about 50% of the abnormal embryos, shortening of the germ band fails, while anus and posterior spiracles open on the dorsal surface behind the head segments (Counce). Female embryos from da1 mothers also show consistent defects in the CNS, which is either reduced in width or shows abrupt bends or twists; abnormally formed gut often extends into the CNS (Caudy et al., 1988). The majority of daughters of da1 mothers surviving at 18oC are morphologically abnormal, often missing structures from one or more imaginal discs or abdominal histoblasts and frequently with duplication of structures (Cline, 1976). Though it was reported that daughters of homozygous da1 females could be rescu
 
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Abed et al., 2011, EMBO J. 30(7): 1289--1301
Degringolade, a SUMO-targeted ubiquitin ligase, inhibits Hairy/Groucho-mediated repression. [FBrf0213366]
Barry et al., 2011, Development 138(9): 1759--1769
The Drosophila STUbL protein Degringolade limits HES functions during embryogenesis. [FBrf0213458]
Cave et al., 2011, Mol. Cell. Biol. 31(1): 22--29
Differential Regulation of Transcription through Distinct Suppressor of Hairless DNA Binding Site Architectures during Notch Signaling in Proneural Clusters. [FBrf0212524]
Egoz-Matia et al., 2011, Dev. Biol. 351(1): 99--109
Spatial regulation of cell adhesion in the Drosophila wing is mediated by Delilah, a potent activator of βPS integrin expression. [FBrf0213026]
Gabilondo et al., 2011, Mech. Dev. 128(3-4): 208--221
A targeted genetic screen identifies crucial players in the specification of the Drosophila abdominal Capaergic neurons. [FBrf0213290]
Neumüller et al., 2011, Cell Stem Cell 8(5): 580--593
Genome-Wide Analysis of Self-Renewal in Drosophila Neural Stem Cells by Transgenic RNAi. [FBrf0213621]
Nicholson et al., 2011, Development 138(2): 251--260
Notch-dependent expression of the archipelago ubiquitin ligase subunit in the Drosophila eye. [FBrf0212669]
Park et al., 2011, PLoS Genet. 7(8): e1002241
Specification of Drosophila corpora cardiaca neuroendocrine cells from mesoderm is regulated by Notch signaling. [FBrf0215231]
Pruteanu-Malinici et al., 2011, PLoS Comput. Biol. 7(7): e1002098
Automatic Annotation of Spatial Expression Patterns via Sparse Bayesian Factor Models. [FBrf0214618]
Bardin et al., 2010, Development 137(5): 705--714
Transcriptional control of stem cell maintenance in the Drosophila intestine. [FBrf0209974]
Bernard et al., 2010, Development 137(16): 2633--2642
Specificity of Notch pathway activation: twist controls the transcriptional output in adult muscle progenitors. [FBrf0211412]
Ismat et al., 2010, Development 137(18): 3107--3117
HLH54F is required for the specification and migration of longitudinal gut muscle founders from the caudal mesoderm of Drosophila. [FBrf0211582]
Johnson et al., 2010, PLoS Genet. 6(3): e1000872
PPS, a Large Multidomain Protein, Functions with Sex-Lethal to Regulate Alternative Splicing in Drosophila. [FBrf0210202]
Melicharek et al., 2010, Hum. Mol. Genet. 19(21): 4253--4264
Kismet/CHD7 regulates axon morphology, memory and locomotion in a Drosophila model of CHARGE syndrome. [FBrf0212001]
modENCODE Consortium et al., 2010, Science 330(6012): 1787--1797
Identification of functional elements and regulatory circuits by Drosophila modENCODE. [FBrf0212741]
Salzer et al., 2010, Genetics 184(1): 185--197
The retinal determination gene eyes absent is regulated by the EGF receptor pathway throughout development in Drosophila. [FBrf0209690]
Witt et al., 2010, Dev. Biol. 344(2): 1060--1070
Atonal, Senseless, and Abdominal-A regulate rhomboid enhancer activity in abdominal sensory organ precursors. [FBrf0211413]
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