A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\Ddc

General Information
SymbolDmel\DdcSpeciesD. melanogaster
NameDopa decarboxylaseAnnotation symbolCG10697
Feature typeprotein_coding_geneFlyBase IDFBgn0000422
Gene Model StatusCurrent Stock availability 25 publicly available
Genomic Location
Chromosome (arm)2LRecombination map2-53.9+
Cytogenetic map37C1-37C1Sequence location2L:19,116,480..19,120,300 [-]

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The gene Dopa decarboxylase is referred to in FlyBase by the symbol Dmel\Ddc (CG10697, FBgn0000422). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: aromatic-L-amino-acid decarboxylase activity. There is experimental evidence for 11 unique biological process terms, many of which group under: single-organism behavior; anatomical structure development; multicellular organismal process; organonitrogen compound metabolic process; memory; oxoacid metabolic process; single-organism developmental process; learning or memory; organic cyclic compound biosynthetic process; serotonin biosynthetic process from tryptophan; response to stress; growth; locomotion; response to temperature stimulus; biological regulation. 145 alleles are reported. The phenotypes of these alleles are annotated with: organ system; adult segment; organ system subdivision; adult mesothoracic segment; cuticle; sensillum; sense organ; thoracic segment; wing hair; eo support cell; adult cuticle. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Aromatic-L-amino-acid decarboxylase; Pyridoxal phosphate-dependent decarboxylase; Pyridoxal phosphate-dependent transferase; Pyridoxal phosphate-dependent transferase, major region, subdomain 1; Pyridoxal phosphate-dependent transferase, major region, subdomain 2; Pyridoxal-phosphate binding site. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of extremely low expression. Peak expression observed during late larval stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult central nervous system, larval trachea, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, larval hindgut, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1639320_a_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of Ddc. Gene sequence location is 2L:19116480..19120300.

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hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
Ddc: Dopa decarboxylase (T.R.F. Wright and J. Hirsh)
Structural gene for dopa decarboxylase [DDC, 3-4-dihydroxy-L-phenylalanine-carboxylase (EC 4.1.28)] which catalyzes the decarboxylation of dopa to dopamine (Lunan and Mitchell, 1969, Arch. Biochem. Biophys. 132: 450-56) and 5-hydroxytryptophan to serotonin (5-hydroxytryptamine) but not tyrosine to tyramine (Livingstone and Tempel, 1983, Nature 303: 67-70). Native DDC isolated from mature larvae is a homodimer with subunit molecular weight 54 kd (Clark, Pass, Venkataraman, and Hodgetts, 1978, Mol. Gen. Genet 162: 287-97). Distinct DDC isoforms are generated in the CNS and hypoderm by alternate splicing of the Ddc primary transcript; the CNS isoform differs by the addition of 35 amino acids at the amino terminus (Morgan, Johnson, and Hirsh, 1986, EMBO J. 5: 3335-42). The predicted subunit molecular weights of these are 57.1 and 53.4 kd, respectively. DDC requires pyridoxal-5-phosphate for activity and is strongly inhibited by heavy-metal ions and the sulfhydryl reagent, N-ethylmaleimide. Initial velocity constants determined by Black and Smarrelli (1986, Biochim. Biophys. Acta 870: 31-40). The dopamine produced by DDC is necessary to effect sclerotization of the cuticle, being further metabolized both to N-acetyldopamine and N-β-alanyldopamine, which after oxidation to their respective quinones, crosslink cuticular proteins. Thus in adults and white prepupae more than 90% of the DDC activity is located in the epidermis (Lunan and Mitchell, 1969; Scholnick, Morgan, and Hirsh, 1983, Cell 34: 37-45). Some DDC activity (~5%) is found in the central nervous system of white prepupae and adults where it produces the neurotransmitters dopamine and serotonin [Wright, 1977, Amer. Zool. 17: 707-21; Livingstone and Tempel, 1983; White and Valles, 1985, Molecular Basis of Neural Development (Edelman, Gell, and Cowan (eds.). John Wiley and Sons, N.Y., pp 547-63]. The limited amounts found in the ovaries (Wright, Steward, Bentley and Adler, 1981, Dev. Genet. 2: 223-35) and proventriculus (Wright and Wright, Proc. Int. Congr. Genet., 15th, 1978, Part I, p. 615) are localized in associated neural ganglia (Konrad and Marsh, 1987, Dev. Biol. 122: 172-85). Five peaks of DDC activity evident during development: at the end of embryogenesis, the two larval molts, pupariation, and eclosion (Marsh and Wright, 1980, Dev. Biol. 80: 379-87; Kraminsky, Clark, Estelle, Gietz, Sage, O'Conner, and Hodgetts, 1980, Proc. Nat. Acad. Sci. USA 77: 4175-79). The largest peak, which occurs at pupariation, is induced by a coincident ecdysone peak of the molting larvae (Marsh and Wright, 1980) and has been shown to be attributable to a rapid increase in translatable DDC mRNA following administration of 20-0H-ecdysone (Kraminsky et al., 1980). Ecdysone induces Ddc expression in the mature larval epidermis within two to four hrs (Karminsky, et al., 1980; Clark, Doctor, Fristrom, and Hodgetts, 1986, Dev. Biol. 114: 141-50). Since cycloheximide addition is sufficient to largely abolish this induction, it appears that this response is an indirect action of ecdysone. A different response of Ddc to ecdysone occurs in cultured imaginal discs; Ddc induction occurs only subsequent to withdrawal of the hormone (Clark et al., 1986). Most mutations in Ddc are homozygous or hemizygous lethal. The effective lethal phases of the first eight lethal alleles, Ddcn1-Ddcn8, were almost identical. As hemizygotes over Df(2L)TW130 almost all mortality is late embryonic with actively moving larvae, exhibiting unpigmented cephalopharyngeal apparatuses and denticle belts, unable to hatch. When homozygous there is a fairly uniform shift in effective lethal phases with mean mortalities from all eight alleles in the cross of Ddcn/CyO x Ddcn/cn bw being 13.6% embryonic, 14.1% larval, and 4.8% pupal (Wright and Wright, 1978). Many larvae hemizygous for lethal alleles, or homozygous deficient for Ddc, when mechanically released from the egg membranes, continue development to the 3rd larval instar and to the pharate adult stage. Genotypes which produce individuals with drastically reduced DDC activities (~0.5-5% of wild type) exhibit an "escaper" phenotype characterized by incomplete pigmentation and sclerotization of the cuticle; developmental time can be prolonged for as many as four or five days; puparia are easily scored showing melanization at each end of the greenish-gray pupa case; adults often die or get stuck in the food within 24 hr of eclosion; macrochaetae may be very thin, long, and straw-colored or colorless; the whole body remains light, i.e., doesn't take on its normal pigmentation; abdominal markings are apparent but do not darken; upon aging a few hours wing axillae become melanized similar to the phenotype of sp, leg joints also become melanized perhaps due to the phenoloxidase wound reaction brought on by ruptures of weakened cuticle; flies walk on tibias rather than tarsi, but leg movements appear to be coordinated (Wright, Bewley, and Sherald, 1976). Genotypes that produce flies exhibiting the "escaper" phenotype include heteroallelic intragenic complementing heterozygotes with less than 5% of the expected number of survivors (Wright, Bewley, and Sherald, 1976), hemizygotes of the ts allele Ddcts2 raised continuously at 22 or 25, or homozygotes for Ddcts1 or Ddcts2 exposed to the restrictive temperature 30 for 24- or 48-hour pulses at the end of the pupal stage (Wright). Ddc temperature-sensitive mutants have been reported to show reduced learning after a three-day period at the restrictive temperature (Tempel, Livingstone, and Quinn, 1984, Proc Nat. Acad. Sci. USA 81: 3577-81). However, these results cannot presently be reproduced by other investigators (see Tully, 1987, Trends in Neurosci. 10: 330-35; Hirsh, 1989, Dev. Genet. 10: 232-38). It is possible that this lack of reproducibility is due to the accumulation of genetic modifiers. In homozygous deficient larvae normally-serotonin-containing neurons lack immunologically detectable serotonin but display normal levels of uptake of exogenously supplied serotonin (Valles and White, J. Neurosci. 6: 1482-91). Further studies of these Ddc- larvae, on which catecholamine histofluorescence studies were performed, revealed novel neuronal subsets lighting up, which become fluorogenic earlier than the wild-type-like neurons in the mutant CNS (Budnik, Martin-Morris, and White, 1986, J. Neurosci. 6: 1482-91). Certain serotonin-containing nerve fibers in developing larvae are still able to reach their normal targets in Ddc- animals (which therefore are intrinsically serotonin-minus), but there is anomalous extra branching associated with the incoming fibers (Budnik, Wu, and White, 1989, J. Neurosci. 9: 2866-77). Ddc mosaics generated by crossing a transduced Ddc+ insert into R(1)wvC (Gailey, Bordne, Valles, Hall, and White, 1987, Genetics 115: 305-11). Such adult mosaics used to reveal no absolute requirement of DDC in any particular portion of epidermis or CNS, but there was low recovery of gynandromorphs with large Ddc- patches. Larval mosaics show that DDC-positive neurons always contain serotonin, but some serotonin-positive cells (which were near DDC+) have no detectable enzyme protein; hence, the serotonin phenotype can be nonautonomous (Valles and White, 1990). In addition to the naturally occurring alleles, DdcRE, DdcRS, and Ddc+4, which are described separately, three surveys of natural populations for Ddc variants have been reported. Estelle and Hodgetts (1984, Mol. Gen. Genet. 195: 434-41) measured DDC levels in 109 strains isogenic for second chromosomes isolated independently by Bewley (1978, Biochem. Genet. 16: 769-75) from collections at Raleigh, NC, Bloomington, IN., and Webster Groves, MO. (WGM). Two (WGM) strains (including Ddc+4) had increased activities and two had reduced activities when compared with a Canton-S control. Marsh and Wright report DDC activities from twelve different wild-type strains maintained in laboratories for many years. Relative to Oregon-R (DdcC) females, they ranged from a low of 68% for Urbana males to a high for Canton-S females (180%) and males (130%) with most strains with activities between Oregon-R and Canton-S. Aquadro, Jennings, Bland, Laurie-Ahlberg, and Langley (1984, Genetics 107: s3) surveyed forty-six second chromosome lines isolated from five natural populations for restriction fragment variations in the 80kb region surrounding Ddc and for adult DDC activity. No consistent pattern of association between level of DDC activity and restriction site haplotype was apparent although the lines showed a two-fold variation in DDC activity. Two lines with 5kb and 1.5kb inserts within an intron and at the 5' end of Ddc showed normal adult DDC activities. The temperature-sensitive periods causing lethality for Ddcts2 homozygotes are primarily during embryogenesis and late in the third larval instar. Heat shocks, 30 for 24 or 48 hr, during metamorphosis do not increase lethality significantly but produce adults with the extreme "escaper" phenotype. DDC in extracts from adult Ddcts1 and Ddcts2 homozygotes is significantly more thermolabile than that from wild-type controls. DDC from Ddcts1/+ heterozygotes is much less labile showing a biphasic inactivation curve. Ddcts2/+ DDC is no more thermolabile than wild-type DDC (Wright, unpublished data). Genotypes with reduced levels of DDC activity, e.g. Ddcn5/Ddcn8 and Ddcn1/Ddcn8 with less than 4% DDC activity, are not more sensitive to dietary alpha methyl dopa nor are genotypes with increased levels of DDC activity more resistant (Marsh and Wright, 1986, Genetics 112: 249-65). In fact, the reverse may be true: reduced DDC, more resistant; increased DDC, more sensitive.
DdcC: Dopa decarboxylase-C
DDC activity and resistance to dietary alpha methyl dopa in the normal range for Oregon-R derived stocks. This strain was put through the same genetic manipulations as DdcRE and DdcRS so it could serve as a valid control for those strains.
DdcDE1: Dopa decarboxylase Differential Expression 1
Hemizygous adults (9% of expected eclose) exhibit an extreme "escaper" phenotype (see Ddc above) except macrochaetae are normally pigmented suggesting that DdcDE1 is differentially active in the epidermis vis-a-vis the bristle-forming cells. Pupa cases of DdcDE1 homo- and hemizygotes are wild type. DDC activity in newly eclosed adult DdcDE1 homozygotes is 4.4 _ 0.2% and in hemizygotes is 0.6 _ 0.1% of wild-type controls. Homozygous late embryos have 4.8 _ 2.3% activity. In striking contrast homozygous white prepupae have 46.5 _ 2.8% DDC activity. However, central nervous systems dissected from these DdcDE1 homozygous white prepupae show a tissue specific difference having 4.8 _ 2.3% DDC activity compared to wild-type CNS. Specific DDC activity in DdcDE1 homozygotes ranges significantly more than two times DDC levels in DdcDE1/Df(2L)TW130 hemizygotes. DDC from DdcDE1 homozygotes, crawling third instar larvae and adults, is less thermostable in vitro in comparison to controls. Late DdcDE1/DdcDE1 embryos (16-20 hr) have no detectable mature 2.0 kb Ddc RNA and have reduced levels of the 2.3 kb RNA. The precise reason for the differential expression has yet to be established but is not due to position effect variegation (Bishop and Wright, 1987, Genetics 115: 477-91). DdcDE1 phenotype rescued by a 7.5kb transformant of Ddc+ DNA.
Ddclo1: Dopa Decarboxylase low-1
Some hemizygous adults exhibit the incomplete sclerotization "escaper" phenotype. Not temperature sensitive: hemizygotes being equally viable at 18, 25, and 30 (40-56% of expected). DDC from Ddclo1 hemizygotes is not more thermolabile in vitro than that from wild type. Heterozygous Ddclo1/CyO have about 77% wild type specific DDC activity and Ddclo1 homozygotes have 15-30% activity.
DdcRE: Dopa decarboxylase-RE
Dual phenotype of elevated DDC activity and increased resistance to dietary alpha methyl dopa relative to Oregon-R derived controls (DdcC). Specific DDC activity of newly eclosed adults 158% and DDC crossreacting material (CRM) 156% of the DdcC control. LD50 for alpha methyl dopa is ~0.4 mM vs. ~0.2 mM for the DdcC control. Gene dosage studies with Ddc+ and l(2)amd+ demonstrate that increased resistance to alpha methyl dopa is not the result of increased DDC activity. Thus, the dual phenotype is inferred to arise from a coordinated increase in Ddc+ activity and l(2)amd+ activity produced either by accumulated changes in a genetic element (or elements) in the close proximity to the Ddc and amd genes.
DdcRS: Dopa decarboxylase-RS
Dual phenotype of elevated DDC activity and increased resistance to dietary and methyl dopa relative to Oregon-R derived controls (DdcC). Specific DDC activity of newly eclosed adults 141% and DDC crossreacting material (CRM) 137% of the DdcC control. Interpretation of phenotype identical to that for DdcRE.
Ddc+4: Dopa decarboxylase +4
No visible phenotype: Ddc+4 overproduces DDC activity at embryonic hatching, the second to third instar molt, and at adult eclosion relative to a Canton-S control: 141%, 150%, and 118% respectively; in contrast, underproduces DDC at pupariation: 50%. These temporal differences are found in epidermis but not in neural tissues where DDC activities are normal. DDC CRM at pupariation and adult eclosion are 49% and 140% respectively of Canton-S CRM. No difference was found in the electrophoretic mobility of non-denatured and denatured DDC molecules. DDC mRNA is 140%, 52%, and 148% of Canton-S at embryonic hatching, pupariation, and adult eclosion respectively indicating that the temporal phenotype is reflected in mRNA levels.
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FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
37C1-37C1  
Limits computationally determined from genome sequence between P{lacW}l(2)37Dbk16106&P{lacW}Catsupk05424 and P{lacW}Ddck02104  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
37C1-37C2  
(determined by in situ hybridisation)  
37B9-37D2  
(determined by in situ hybridisation)  
37C1-37C2  
(determined by in situ hybridisation)  
37C-37C  
(determined by in situ hybridisation)  
37C-37C  
(determined by in situ hybridisation)  
37B13-37C5  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
2-53.9+
 
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Notes
Mapping based on 5/5781 recombinants.
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detailed view FBtr0081155 FBtr0290291 FBtr0081166 FBtr0081167 FBtr0081165 FBtr0081164 FBpp0080699 FBpp0080709 FBpp0288730 FBpp0080710 FBti0042541 FBti0126593 FBti0046749 FBti0006897 FBti0066175 FBti0106021
Comments on Gene Model
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Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0081166
  1926
  475
FBtr0081167
  2082
  510
FBtr0290291
  2777
  475
Additional Transcript Data & Comments
Reported size (kB)
4.6, 4.05, 2.95, 2.75, 2.22, 2.14, 2.10, 1.92, 1.75 (northern blot)
2.3, 2.0 (northern blot)
2.1 (northern blot)
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External Data
Crossreferences
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Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
Ddc-PB  
FBpp0080709  
53.6  
475  
6.46  
Ddc-PC  
FBpp0080710  
57.3  
510  
6.51  
Ddc-PD  
FBpp0288730  
53.6  
475  
6.46  
Additional Polypeptide Data & Comments
Reported size (kDa)
510, 502 (aa); 56.7, 56.2 (kD predicted)
60 (kD observed)
56 (kD observed)
Comments
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InterPro domains - A database of protein families, domains, and functional sites
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protein binding site
protein binding site
evidence=experimental
bound_moiety=br-Z1-XP
bound_moiety=br-Z4-XP
protein binding site
protein binding site
protein binding site
protein binding site
protein binding site
protein binding site
protein binding site
protein binding site
protein binding site
bound_moiety=br-Z4-XP
bound_moiety=br-Z1-XP
evidence=experimental
protein binding site
bound_moiety=br-Z1-XP
bound_moiety=br-Z4-XP
evidence=experimental
protein binding site
protein binding site
bound_moiety=br-Z1-XP
bound_moiety=br-Z4-XP
evidence=experimental
protein binding site
protein binding site
protein binding site
protein binding site
regulatory region
regulatory region
regulatory region
regulatory region
regulatory region
regulatory region
regulatory region
regulatory region
regulatory region
regulatory region
regulatory region
regulatory region
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Stage
Tissue/Position (including subcellular localization)
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dissected tissue
Stage
Tissue/Position (including subcellular localization)
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in situ
Stage
Tissue/Position (including subcellular localization)
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northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
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Marker for
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CV Term
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enzyme assay or biochemical detection
Stage
Tissue/Position (including subcellular localization)
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immunolocalization
Stage
Tissue/Position (including subcellular localization)
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Additional Descriptive Data
Ddc protein enzymatic activity levels rise during late larval stages, are highest during the pre-pupal stage of development, and rise again prior to ecolsion after a decrease in activity.
Ddc protein is expressed in a subset of serotonergic neurons of the adult brain, including the mushroom body dorsal paired medial neurons.
Ddc labels serotonergic neurons and expression is more widespread than that seen with Scer\GAL45-HT7.ERGP which labels a serotonergic receptor. Expression of Ddc is seen in subsets of cells in the larval brain and ventral nerve cord. In the adult, labelling is widespread but stronger in the central complex, including the ring neurons of the ellipsoid body, the lateral triangles (bulbs) and the fan-shaped body. Co-localisation of Ddc with Scer\GAL45-HT7.ERGP is observed in the central complex. There is also Ddc staining in 2 centrifugal neurons which innervate most of the antennal lobe glomeruli. These neurons do not express Scer\GAL45-HT7.ERGP. Ddc is also observed in all thoracic and abdominal neuromeres of the thoracico-abdominal ganglion, with stronger expression in the abdominal neuromeres.
Ddc activity was investigated in whole imagos and in developing wings. In the whole imago, activity increases steadily between 64 hours after pupariation and eclosion. In wings, there is a peak of activity at 76 hrs which correlates with the time when the wing microchaetae and hairs have become fully melanized.
Ddc activity reaches a maximum late in embryogenesis and persists into first instar larvae. It does not parallel ecdysone activity which is at a maximum at midembryogenesis.
Markers that uniquely identify the cells of the NB3-7 lineage were used to examine the serotonin expressing cell lineages.
In third instar larvae, Ddc protein localizes to approximately 125 neurons, and a subset of glial cells. About 80 of the 125 neurons also stain for serotonin.
Immunolocalization experiments using an anti-Ddc antibody indicate that Ddc protein is expressed in the epidermis and the nervous system of the third instar larva and adult. A segmentally repeated pattern of staining is seen in the larval ventral ganglion and brain. A subset of the Ddc-positive cells match the pattern of serotonin-containing cells. The staining in the adult hindgut and oviduct is likely to be due neurons associated with these structures.
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References
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Reporter: P{Ddc-GAL4.L}
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Tissue/Position (including subcellular localization)
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Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
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FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)


   Styles
   Scales

Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult central nervous system, larval trachea, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, larval hindgut, adult carcass.
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Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 147.1
Larval Midgut
 
 42.7
Larval Hindgut
 
 217.1
Larval Malpighian Tubules
 
 7.4
Larval Fat Body
 
 20.4
Larval Salivary Gland
 
 20.2
Larval Trachea
 
 552.1
Larval Carcass
 
 1874.525
Adult Head
 
 207.3
Adult Eye
 
 230.575
Adult Brain
 
 800.4
Adult Thoracic-Abdominal Ganglion
 
 564.5
Adult Crop
 
 63.3
Adult Midgut
 
 93.5
Adult Hindgut
 
 75.9
Adult Malpighian Tubules
 
 23.4
Adult Fat Body
 
 25.5
Adult Salivary Gland
 
 30.9
Adult Heart
 
 22.775
Adult VirginFemale Spermatheca
 
 30.4
Adult InseminatedFemale Spermatheca
 
 43
Adult Ovary
 
 5.6
Adult Testis
 
 91.6
Adult Male Accessory Gland
 
 14.1
Adult Carcass
 
 232.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 147.1
Larval Midgut
 
 42.7
Larval Hindgut
 
 217.1
Larval Malpighian Tubules
 
 7.4
Larval Fat Body
 
 20.4
Larval Salivary Gland
 
 20.2
Larval Trachea
 (552.1)
Larval Carcass
 (1874.525)
Adult Head
 
 207.3
Adult Eye
 
 230.575
Adult Brain
 (800.4)
Adult Thoracic-Abdominal Ganglion
 (564.5)
Adult Crop
 
 63.3
Adult Midgut
 
 93.5
Adult Hindgut
 
 75.9
Adult Malpighian Tubules
 
 23.4
Adult Fat Body
 
 25.5
Adult Salivary Gland
 
 30.9
Adult Heart
 
 22.775
Adult VirginFemale Spermatheca
 
 30.4
Adult InseminatedFemale Spermatheca
 
 43
Adult Ovary
 
 5.6
Adult Testis
 
 91.6
Adult Male Accessory Gland
 
 14.1
Adult Carcass
 
 232.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 147.1
Larval Midgut
 
 42.7
Larval Hindgut
 
 217.1
Larval Malpighian Tubules
 
 7.4
Larval Fat Body
 
 20.4
Larval Salivary Gland
 
 20.2
Larval Trachea
 
 552.1
Larval Carcass
 (1874.525)
Adult Head
 
 207.3
Adult Eye
 
 230.575
Adult Brain
 
 800.4
Adult Thoracic-Abdominal Ganglion
 
 564.5
Adult Crop
 
 63.3
Adult Midgut
 
 93.5
Adult Hindgut
 
 75.9
Adult Malpighian Tubules
 
 23.4
Adult Fat Body
 
 25.5
Adult Salivary Gland
 
 30.9
Adult Heart
 
 22.775
Adult VirginFemale Spermatheca
 
 30.4
Adult InseminatedFemale Spermatheca
 
 43
Adult Ovary
 
 5.6
Adult Testis
 
 91.6
Adult Male Accessory Gland
 
 14.1
Adult Carcass
 
 232.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 147.1
Larval Midgut
 
 42.7
Larval Hindgut
 
 217.1
Larval Malpighian Tubules
 
 7.4
Larval Fat Body
 
 20.4
Larval Salivary Gland
 
 20.2
Larval Trachea
 
 552.1
Larval Carcass
 
 1874.525
Adult Head
 
 207.3
Adult Eye
 
 230.575
Adult Brain
 
 800.4
Adult Thoracic-Abdominal Ganglion
 
 564.5
Adult Crop
 
 63.3
Adult Midgut
 
 93.5
Adult Hindgut
 
 75.9
Adult Malpighian Tubules
 
 23.4
Adult Fat Body
 
 25.5
Adult Salivary Gland
 
 30.9
Adult Heart
 
 22.775
Adult VirginFemale Spermatheca
 
 30.4
Adult InseminatedFemale Spermatheca
 
 43
Adult Ovary
 
 5.6
Adult Testis
 
 91.6
Adult Male Accessory Gland
 
 14.1
Adult Carcass
 
 232.4
Expression Level Scale
 Very high 
log, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 147.1
Larval Midgut
 
 42.7
Larval Hindgut
 
 217.1
Larval Malpighian Tubules
 
 7.4
Larval Fat Body
 
 20.4
Larval Salivary Gland
 
 20.2
Larval Trachea
 
 552.1
Larval Carcass
 
 1874.525
Adult Head
 
 207.3
Adult Eye
 
 230.575
Adult Brain
 
 800.4
Adult Thoracic-Abdominal Ganglion
 
 564.5
Adult Crop
 
 63.3
Adult Midgut
 
 93.5
Adult Hindgut
 
 75.9
Adult Malpighian Tubules
 
 23.4
Adult Fat Body
 
 25.5
Adult Salivary Gland
 
 30.9
Adult Heart
 
 22.775
Adult VirginFemale Spermatheca
 
 30.4
Adult InseminatedFemale Spermatheca
 
 43
Adult Ovary
 
 5.6
Adult Testis
 
 91.6
Adult Male Accessory Gland
 
 14.1
Adult Carcass
 
 232.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 147.1
Larval Midgut
 
 42.7
Larval Hindgut
 
 217.1
Larval Malpighian Tubules
 
 7.4
Larval Fat Body
 
 20.4
Larval Salivary Gland
 
 20.2
Larval Trachea
 552.1
Larval Carcass
 (1874.525)
Adult Head
 
 207.3
Adult Eye
 
 230.575
Adult Brain
 800.4
Adult Thoracic-Abdominal Ganglion
 564.5
Adult Crop
 
 63.3
Adult Midgut
 
 93.5
Adult Hindgut
 
 75.9
Adult Malpighian Tubules
 
 23.4
Adult Fat Body
 
 25.5
Adult Salivary Gland
 
 30.9
Adult Heart
 
 22.775
Adult VirginFemale Spermatheca
 
 30.4
Adult InseminatedFemale Spermatheca
 
 43
Adult Ovary
 
 5.6
Adult Testis
 
 91.6
Adult Male Accessory Gland
 
 14.1
Adult Carcass
 
 232.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 147.1
Larval Midgut
 
 42.7
Larval Hindgut
 
 217.1
Larval Malpighian Tubules
 
 7.4
Larval Fat Body
 
 20.4
Larval Salivary Gland
 
 20.2
Larval Trachea
 
 552.1
Larval Carcass
 (1874.525)
Adult Head
 
 207.3
Adult Eye
 
 230.575
Adult Brain
 
 800.4
Adult Thoracic-Abdominal Ganglion
 
 564.5
Adult Crop
 
 63.3
Adult Midgut
 
 93.5
Adult Hindgut
 
 75.9
Adult Malpighian Tubules
 
 23.4
Adult Fat Body
 
 25.5
Adult Salivary Gland
 
 30.9
Adult Heart
 
 22.775
Adult VirginFemale Spermatheca
 
 30.4
Adult InseminatedFemale Spermatheca
 
 43
Adult Ovary
 
 5.6
Adult Testis
 
 91.6
Adult Male Accessory Gland
 
 14.1
Adult Carcass
 
 232.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 147.1
Larval Midgut
 
 42.7
Larval Hindgut
 
 217.1
Larval Malpighian Tubules
 
 7.4
Larval Fat Body
 
 20.4
Larval Salivary Gland
 
 20.2
Larval Trachea
 
 552.1
Larval Carcass
 
 1874.525
Adult Head
 
 207.3
Adult Eye
 
 230.575
Adult Brain
 
 800.4
Adult Thoracic-Abdominal Ganglion
 
 564.5
Adult Crop
 
 63.3
Adult Midgut
 
 93.5
Adult Hindgut
 
 75.9
Adult Malpighian Tubules
 
 23.4
Adult Fat Body
 
 25.5
Adult Salivary Gland
 
 30.9
Adult Heart
 
 22.775
Adult VirginFemale Spermatheca
 
 30.4
Adult InseminatedFemale Spermatheca
 
 43
Adult Ovary
 
 5.6
Adult Testis
 
 91.6
Adult Male Accessory Gland
 
 14.1
Adult Carcass
 
 232.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 207.3
 
NA 
Eye
 
 230.575
 
NA 
Brain
 
 800.4
 
147.1 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 564.5
 
NA 
Crop
 
 63.3
 
42.7 
Midgut
 
 93.5
 
217.1 
Hindgut
 
 75.9
 
7.4 
Malpighian Tubules
 
 no informative data
 
no informative data 
Fat Body
 
 no informative data
 
no informative data 
Salivary Gland
 
 no informative data
 
NA 
Heart
 
 no informative data
 
552.1 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 30.4
 
NA 
InseminatedFemale Spermatheca
 
 43
 
NA 
Ovary
 
 5.6
 
NA 
Testis
 
 91.6
 
NA 
Male Accessory Gland
 
 no informative data
 
1874.525 
Carcass
 
 232.4

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 2
central nervous system, larvae L3
 
 10
central nervous system, pupae P8
 
 5
head, virgin 1-day female
 
 37
head, virgin 4-day female
 
 44
head, virgin 20-day female
 
 41
head, mated 1-day female
 
 32
head, mated 4-day female
 
 41
head, mated 20-day female
 
 31
head, mated 1-day male
 
 56
head, mated 4-day male
 
 69
head, mated 20-day male
 
 77
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 1
digestive system, larvae L3 wandering
 
 1
digestive system, 1-day adult
 
 3
digestive system, 4-day adult
 
 3
digestive system, 20-day adult
 
 2
fat body, larvae L3 wandering
 
 0
fat body, white prepupae
 
 1
fat body, pupae P8
 
 8
carcass, larvae L3 wandering
 
 451
carcass, 1-day adult
 
 11
carcass, 4-day adult
 
 9
carcass, 20-day adult
 
 10
ovary, virgin 4-day female
 
 0
ovary, mated 4-day female
 
 0
testis, mated 4-day male
 
 7
accessory gland, mated 4-day male
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 2
central nervous system, larvae L3
 
 10
central nervous system, pupae P8
 
 5
head, virgin 1-day female
 (37)
head, virgin 4-day female
 (44)
head, virgin 20-day female
 (41)
head, mated 1-day female
 (32)
head, mated 4-day female
 (41)
head, mated 20-day female
 (31)
head, mated 1-day male
 (56)
head, mated 4-day male
 (69)
head, mated 20-day male
 (77)
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 1
digestive system, larvae L3 wandering
 
 1
digestive system, 1-day adult
 
 3
digestive system, 4-day adult
 
 3
digestive system, 20-day adult
 
 2
fat body, larvae L3 wandering
 
 0
fat body, white prepupae
 
 1
fat body, pupae P8
 
 8
carcass, larvae L3 wandering
 (451)
carcass, 1-day adult
 
 11
carcass, 4-day adult
 
 9
carcass, 20-day adult
 
 10
ovary, virgin 4-day female
 
 0
ovary, mated 4-day female
 
 0
testis, mated 4-day male
 
 7
accessory gland, mated 4-day male
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 2
central nervous system, larvae L3
 
 10
central nervous system, pupae P8
 
 5
head, virgin 1-day female
 
 37
head, virgin 4-day female
 
 44
head, virgin 20-day female
 
 41
head, mated 1-day female
 
 32
head, mated 4-day female
 
 41
head, mated 20-day female
 
 31
head, mated 1-day male
 
 56
head, mated 4-day male
 
 69
head, mated 20-day male
 
 77
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 1
digestive system, larvae L3 wandering
 
 1
digestive system, 1-day adult
 
 3
digestive system, 4-day adult
 
 3
digestive system, 20-day adult
 
 2
fat body, larvae L3 wandering
 
 0
fat body, white prepupae
 
 1
fat body, pupae P8
 
 8
carcass, larvae L3 wandering
 (451)
carcass, 1-day adult
 
 11
carcass, 4-day adult
 
 9
carcass, 20-day adult
 
 10
ovary, virgin 4-day female
 
 0
ovary, mated 4-day female
 
 0
testis, mated 4-day male
 
 7
accessory gland, mated 4-day male
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 2
central nervous system, larvae L3
 
 10
central nervous system, pupae P8
 
 5
head, virgin 1-day female
 
 37
head, virgin 4-day female
 
 44
head, virgin 20-day female
 
 41
head, mated 1-day female
 
 32
head, mated 4-day female
 
 41
head, mated 20-day female
 
 31
head, mated 1-day male
 
 56
head, mated 4-day male
 
 69
head, mated 20-day male
 
 77
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 1
digestive system, larvae L3 wandering
 
 1
digestive system, 1-day adult
 
 3
digestive system, 4-day adult
 
 3
digestive system, 20-day adult
 
 2
fat body, larvae L3 wandering
 
 0
fat body, white prepupae
 
 1
fat body, pupae P8
 
 8
carcass, larvae L3 wandering
 
 451
carcass, 1-day adult
 
 11
carcass, 4-day adult
 
 9
carcass, 20-day adult
 
 10
ovary, virgin 4-day female
 
 0
ovary, mated 4-day female
 
 0
testis, mated 4-day male
 
 7
accessory gland, mated 4-day male
 
 2
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 2
central nervous system, larvae L3
 
 10
central nervous system, pupae P8
 
 5
head, virgin 1-day female
 
 37
head, virgin 4-day female
 
 44
head, virgin 20-day female
 
 41
head, mated 1-day female
 
 32
head, mated 4-day female
 
 41
head, mated 20-day female
 
 31
head, mated 1-day male
 
 56
head, mated 4-day male
 
 69
head, mated 20-day male
 
 77
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 1
digestive system, larvae L3 wandering
 
 1
digestive system, 1-day adult
 
 3
digestive system, 4-day adult
 
 3
digestive system, 20-day adult
 
 2
fat body, larvae L3 wandering
 
 0
fat body, white prepupae
 
 1
fat body, pupae P8
 
 8
carcass, larvae L3 wandering
 
 451
carcass, 1-day adult
 
 11
carcass, 4-day adult
 
 9
carcass, 20-day adult
 
 10
ovary, virgin 4-day female
 
 0
ovary, mated 4-day female
 
 0
testis, mated 4-day male
 
 7
accessory gland, mated 4-day male
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 2
central nervous system, larvae L3
 
 10
central nervous system, pupae P8
 
 5
head, virgin 1-day female
 (37)
head, virgin 4-day female
 (44)
head, virgin 20-day female
 (41)
head, mated 1-day female
 32
head, mated 4-day female
 (41)
head, mated 20-day female
 31
head, mated 1-day male
 (56)
head, mated 4-day male
 (69)
head, mated 20-day male
 (77)
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 1
digestive system, larvae L3 wandering
 
 1
digestive system, 1-day adult
 
 3
digestive system, 4-day adult
 
 3
digestive system, 20-day adult
 
 2
fat body, larvae L3 wandering
 
 0
fat body, white prepupae
 
 1
fat body, pupae P8
 
 8
carcass, larvae L3 wandering
 (451)
carcass, 1-day adult
 
 11
carcass, 4-day adult
 
 9
carcass, 20-day adult
 
 10
ovary, virgin 4-day female
 
 0
ovary, mated 4-day female
 
 0
testis, mated 4-day male
 
 7
accessory gland, mated 4-day male
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 2
central nervous system, larvae L3
 
 10
central nervous system, pupae P8
 
 5
head, virgin 1-day female
 
 37
head, virgin 4-day female
 
 44
head, virgin 20-day female
 
 41
head, mated 1-day female
 
 32
head, mated 4-day female
 
 41
head, mated 20-day female
 
 31
head, mated 1-day male
 
 56
head, mated 4-day male
 
 69
head, mated 20-day male
 
 77
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 1
digestive system, larvae L3 wandering
 
 1
digestive system, 1-day adult
 
 3
digestive system, 4-day adult
 
 3
digestive system, 20-day adult
 
 2
fat body, larvae L3 wandering
 
 0
fat body, white prepupae
 
 1
fat body, pupae P8
 
 8
carcass, larvae L3 wandering
 (451)
carcass, 1-day adult
 
 11
carcass, 4-day adult
 
 9
carcass, 20-day adult
 
 10
ovary, virgin 4-day female
 
 0
ovary, mated 4-day female
 
 0
testis, mated 4-day male
 
 7
accessory gland, mated 4-day male
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 2
central nervous system, larvae L3
 
 10
central nervous system, pupae P8
 
 5
head, virgin 1-day female
 
 37
head, virgin 4-day female
 
 44
head, virgin 20-day female
 
 41
head, mated 1-day female
 
 32
head, mated 4-day female
 
 41
head, mated 20-day female
 
 31
head, mated 1-day male
 
 56
head, mated 4-day male
 
 69
head, mated 20-day male
 
 77
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 1
digestive system, larvae L3 wandering
 
 1
digestive system, 1-day adult
 
 3
digestive system, 4-day adult
 
 3
digestive system, 20-day adult
 
 2
fat body, larvae L3 wandering
 
 0
fat body, white prepupae
 
 1
fat body, pupae P8
 
 8
carcass, larvae L3 wandering
 
 451
carcass, 1-day adult
 
 11
carcass, 4-day adult
 
 9
carcass, 20-day adult
 
 10
ovary, virgin 4-day female
 
 0
ovary, mated 4-day female
 
 0
testis, mated 4-day male
 
 7
accessory gland, mated 4-day male
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 
central nervous system, larvae L3
 
 
central nervous system, pupae P8
 
 
head, virgin 1-day female
 
 
head, virgin 4-day female
 
 
head, virgin 20-day female
 
 
head, mated 1-day female
 
 
head, mated 4-day female
 
 
head, mated 20-day female
 
 
head, mated 1-day male
 
 
head, mated 4-day male
 
 
head, mated 20-day male
 
 
salivary gland, larvae L3 wandering
 
 
salivary gland, white prepupae
 
 
digestive system, larvae L3 wandering
 
 
digestive system, 1-day adult
 
 
digestive system, 4-day adult
 
 
digestive system, 20-day adult
 
 
fat body, larvae L3 wandering
 
 
fat body, white prepupae
 
 
fat body, pupae P8
 
 
carcass, larvae L3 wandering
 
 
carcass, 1-day adult
 
 
carcass, 4-day adult
 
 
carcass, 20-day adult
 
 
ovary, virgin 4-day female
 
 
ovary, mated 4-day female
 
 
testis, mated 4-day male
 
 
accessory gland, mated 4-day male
 
 

hide modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)


   Styles
   Scales

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of extremely low expression. Peak expression observed during late larval stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 0
embryo 02-04hr
 
 0
embryo 04-06hr
 
 0
embryo 06-08hr
 
 0
embryo 08-10hr
 
 0
embryo 10-12hr
 
 0
embryo 12-14hr
 
 0
embryo 14-16hr
 
 3
embryo 16-18hr
 
 33
embryo 18-20hr
 
 93
embryo 20-22hr
 
 30
embryo 22-24hr
 
 30
larva L1
 
 12
larva L2
 
 9
larva L3 12hr old
 
 16
larva L3 puffstage 1-2
 
 11
larva L3 puffstage 3-6
 
 111
larva L3 puffstage 7-9
 
 339
white prepupae new
 
 131
white prepupae 12hr
 
 52
white prepupae 24hr
 
 6
pupae 2d postWPP
 
 8
pupae 3d postWPP
 
 102
pupae 4d postWPP
 
 122
adult male 01day
 
 25
adult male 05day
 
 25
adult male 30day
 
 24
adult female 01day
 
 15
adult female 05day
 
 6
adult female 30day
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 0
embryo 02-04hr
 
 0
embryo 04-06hr
 
 0
embryo 06-08hr
 
 0
embryo 08-10hr
 
 0
embryo 10-12hr
 
 0
embryo 12-14hr
 
 0
embryo 14-16hr
 
 3
embryo 16-18hr
 (33)
embryo 18-20hr
 (93)
embryo 20-22hr
 (30)
embryo 22-24hr
 (30)
larva L1
 
 12
larva L2
 
 9
larva L3 12hr old
 
 16
larva L3 puffstage 1-2
 
 11
larva L3 puffstage 3-6
 (111)
larva L3 puffstage 7-9
 (339)
white prepupae new
 (131)
white prepupae 12hr
 (52)
white prepupae 24hr
 
 6
pupae 2d postWPP
 
 8
pupae 3d postWPP
 (102)
pupae 4d postWPP
 (122)
adult male 01day
 
 25
adult male 05day
 
 25
adult male 30day
 
 24
adult female 01day
 
 15
adult female 05day
 
 6
adult female 30day
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 0
embryo 02-04hr
 
 0
embryo 04-06hr
 
 0
embryo 06-08hr
 
 0
embryo 08-10hr
 
 0
embryo 10-12hr
 
 0
embryo 12-14hr
 
 0
embryo 14-16hr
 
 3
embryo 16-18hr
 
 33
embryo 18-20hr
 
 93
embryo 20-22hr
 
 30
embryo 22-24hr
 
 30
larva L1
 
 12
larva L2
 
 9
larva L3 12hr old
 
 16
larva L3 puffstage 1-2
 
 11
larva L3 puffstage 3-6
 (111)
larva L3 puffstage 7-9
 (339)
white prepupae new
 (131)
white prepupae 12hr
 
 52
white prepupae 24hr
 
 6
pupae 2d postWPP
 
 8
pupae 3d postWPP
 102
pupae 4d postWPP
 (122)
adult male 01day
 
 25
adult male 05day
 
 25
adult male 30day
 
 24
adult female 01day
 
 15
adult female 05day
 
 6
adult female 30day
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 0
embryo 02-04hr
 
 0
embryo 04-06hr
 
 0
embryo 06-08hr
 
 0
embryo 08-10hr
 
 0
embryo 10-12hr
 
 0
embryo 12-14hr
 
 0
embryo 14-16hr
 
 3
embryo 16-18hr
 
 33
embryo 18-20hr
 
 93
embryo 20-22hr
 
 30
embryo 22-24hr
 
 30
larva L1
 
 12
larva L2
 
 9
larva L3 12hr old
 
 16
larva L3 puffstage 1-2
 
 11
larva L3 puffstage 3-6
 
 111
larva L3 puffstage 7-9
 
 339
white prepupae new
 
 131
white prepupae 12hr
 
 52
white prepupae 24hr
 
 6
pupae 2d postWPP
 
 8
pupae 3d postWPP
 
 102
pupae 4d postWPP
 
 122
adult male 01day
 
 25
adult male 05day
 
 25
adult male 30day
 
 24
adult female 01day
 
 15
adult female 05day
 
 6
adult female 30day
 
 6
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 0
embryo 02-04hr
 
 0
embryo 04-06hr
 
 0
embryo 06-08hr
 
 0
embryo 08-10hr
 
 0
embryo 10-12hr
 
 0
embryo 12-14hr
 
 0
embryo 14-16hr
 
 3
embryo 16-18hr
 
 33
embryo 18-20hr
 
 93
embryo 20-22hr
 
 30
embryo 22-24hr
 
 30
larva L1
 
 12
larva L2
 
 9
larva L3 12hr old
 
 16
larva L3 puffstage 1-2
 
 11
larva L3 puffstage 3-6
 
 111
larva L3 puffstage 7-9
 
 339
white prepupae new
 
 131
white prepupae 12hr
 
 52
white prepupae 24hr
 
 6
pupae 2d postWPP
 
 8
pupae 3d postWPP
 
 102
pupae 4d postWPP
 
 122
adult male 01day
 
 25
adult male 05day
 
 25
adult male 30day
 
 24
adult female 01day
 
 15
adult female 05day
 
 6
adult female 30day
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 0
embryo 02-04hr
 
 0
embryo 04-06hr
 
 0
embryo 06-08hr
 
 0
embryo 08-10hr
 
 0
embryo 10-12hr
 
 0
embryo 12-14hr
 
 0
embryo 14-16hr
 
 3
embryo 16-18hr
 (33)
embryo 18-20hr
 (93)
embryo 20-22hr
 30
embryo 22-24hr
 30
larva L1
 
 12
larva L2
 
 9
larva L3 12hr old
 
 16
larva L3 puffstage 1-2
 
 11
larva L3 puffstage 3-6
 (111)
larva L3 puffstage 7-9
 (339)
white prepupae new
 (131)
white prepupae 12hr
 (52)
white prepupae 24hr
 
 6
pupae 2d postWPP
 
 8
pupae 3d postWPP
 (102)
pupae 4d postWPP
 (122)
adult male 01day
 
 25
adult male 05day
 
 25
adult male 30day
 
 24
adult female 01day
 
 15
adult female 05day
 
 6
adult female 30day
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 0
embryo 02-04hr
 
 0
embryo 04-06hr
 
 0
embryo 06-08hr
 
 0
embryo 08-10hr
 
 0
embryo 10-12hr
 
 0
embryo 12-14hr
 
 0
embryo 14-16hr
 
 3
embryo 16-18hr
 
 33
embryo 18-20hr
 
 93
embryo 20-22hr
 
 30
embryo 22-24hr
 
 30
larva L1
 
 12
larva L2
 
 9
larva L3 12hr old
 
 16
larva L3 puffstage 1-2
 
 11
larva L3 puffstage 3-6
 111
larva L3 puffstage 7-9
 (339)
white prepupae new
 131
white prepupae 12hr
 
 52
white prepupae 24hr
 
 6
pupae 2d postWPP
 
 8
pupae 3d postWPP
 102
pupae 4d postWPP
 122
adult male 01day
 
 25
adult male 05day
 
 25
adult male 30day
 
 24
adult female 01day
 
 15
adult female 05day
 
 6
adult female 30day
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 0
embryo 02-04hr
 
 0
embryo 04-06hr
 
 0
embryo 06-08hr
 
 0
embryo 08-10hr
 
 0
embryo 10-12hr
 
 0
embryo 12-14hr
 
 0
embryo 14-16hr
 
 3
embryo 16-18hr
 
 33
embryo 18-20hr
 
 93
embryo 20-22hr
 
 30
embryo 22-24hr
 
 30
larva L1
 
 12
larva L2
 
 9
larva L3 12hr old
 
 16
larva L3 puffstage 1-2
 
 11
larva L3 puffstage 3-6
 
 111
larva L3 puffstage 7-9
 
 339
white prepupae new
 
 131
white prepupae 12hr
 
 52
white prepupae 24hr
 
 6
pupae 2d postWPP
 
 8
pupae 3d postWPP
 
 102
pupae 4d postWPP
 
 122
adult male 01day
 
 25
adult male 05day
 
 25
adult male 30day
 
 24
adult female 01day
 
 15
adult female 05day
 
 6
adult female 30day
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

modENCODE Temporal Expression Data (Graveley et al., 2011)
hide modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 0
Schneider line 2 Sg4
 
 0
embryonic 1182-4H
 
 0
embryonic GM2
 
 1
embryonic Kc167
 
 0
embryonic S1
 
 1
embryonic S3
 
 0
leg disc CME L1
 
 0
wing disc CME-W2
 
 1
wing disc ML-DmD8
 
 0
wing disc ML-DmD9
 
 0
wing disc ML-DmD16-c3
 
 0
wing disc ML-DmD21
 
 0
wing disc ML-DmD32
 
 0
haltere disc ML-DmD17-c3
 
 0
eye-antennal disc ML-DmD11
 
 0
antennal disc ML-DmD20-c5
 
 0
mixed discs ML-DmD4-c1
 
 0
CNS ML-DmBG1-c1
 
 1
CNS ML-DmBG2-c2
 
 6
tumorous blood cells mbn2
 
 0
ovary fGS/OSS
 
 0
ovary OSC
 
 1
ovary OSS
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 0
Schneider line 2 Sg4
 
 0
embryonic 1182-4H
 
 0
embryonic GM2
 
 1
embryonic Kc167
 
 0
embryonic S1
 
 1
embryonic S3
 
 0
leg disc CME L1
 
 0
wing disc CME-W2
 
 1
wing disc ML-DmD8
 
 0
wing disc ML-DmD9
 
 0
wing disc ML-DmD16-c3
 
 0
wing disc ML-DmD21
 
 0
wing disc ML-DmD32
 
 0
haltere disc ML-DmD17-c3
 
 0
eye-antennal disc ML-DmD11
 
 0
antennal disc ML-DmD20-c5
 
 0
mixed discs ML-DmD4-c1
 
 0
CNS ML-DmBG1-c1
 
 1
CNS ML-DmBG2-c2
 
 6
tumorous blood cells mbn2
 
 0
ovary fGS/OSS
 
 0
ovary OSC
 
 1
ovary OSS
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 0
Schneider line 2 Sg4
 
 0
embryonic 1182-4H
 
 0
embryonic GM2
 
 1
embryonic Kc167
 
 0
embryonic S1
 
 1
embryonic S3
 
 0
leg disc CME L1
 
 0
wing disc CME-W2
 
 1
wing disc ML-DmD8
 
 0
wing disc ML-DmD9
 
 0
wing disc ML-DmD16-c3
 
 0
wing disc ML-DmD21
 
 0
wing disc ML-DmD32
 
 0
haltere disc ML-DmD17-c3
 
 0
eye-antennal disc ML-DmD11
 
 0
antennal disc ML-DmD20-c5
 
 0
mixed discs ML-DmD4-c1
 
 0
CNS ML-DmBG1-c1
 
 1
CNS ML-DmBG2-c2
 
 6
tumorous blood cells mbn2
 
 0
ovary fGS/OSS
 
 0
ovary OSC
 
 1
ovary OSS
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 0
Schneider line 2 Sg4
 
 0
embryonic 1182-4H
 
 0
embryonic GM2
 
 1
embryonic Kc167
 
 0
embryonic S1
 
 1
embryonic S3
 
 0
leg disc CME L1
 
 0
wing disc CME-W2
 
 1
wing disc ML-DmD8
 
 0
wing disc ML-DmD9
 
 0
wing disc ML-DmD16-c3
 
 0
wing disc ML-DmD21
 
 0
wing disc ML-DmD32
 
 0
haltere disc ML-DmD17-c3
 
 0
eye-antennal disc ML-DmD11
 
 0
antennal disc ML-DmD20-c5
 
 0
mixed discs ML-DmD4-c1
 
 0
CNS ML-DmBG1-c1
 
 1
CNS ML-DmBG2-c2
 
 6
tumorous blood cells mbn2
 
 0
ovary fGS/OSS
 
 0
ovary OSC
 
 1
ovary OSS
 
 1
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 0
Schneider line 2 Sg4
 
 0
embryonic 1182-4H
 
 0
embryonic GM2
 
 1
embryonic Kc167
 
 0
embryonic S1
 
 1
embryonic S3
 
 0
leg disc CME L1
 
 0
wing disc CME-W2
 
 1
wing disc ML-DmD8
 
 0
wing disc ML-DmD9
 
 0
wing disc ML-DmD16-c3
 
 0
wing disc ML-DmD21
 
 0
wing disc ML-DmD32
 
 0
haltere disc ML-DmD17-c3
 
 0
eye-antennal disc ML-DmD11
 
 0
antennal disc ML-DmD20-c5
 
 0
mixed discs ML-DmD4-c1
 
 0
CNS ML-DmBG1-c1
 
 1
CNS ML-DmBG2-c2
 
 6
tumorous blood cells mbn2
 
 0
ovary fGS/OSS
 
 0
ovary OSC
 
 1
ovary OSS
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
log, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 0
Schneider line 2 Sg4
 
 0
embryonic 1182-4H
 
 0
embryonic GM2
 
 1
embryonic Kc167
 
 0
embryonic S1
 
 1
embryonic S3
 
 0
leg disc CME L1
 
 0
wing disc CME-W2
 
 1
wing disc ML-DmD8
 
 0
wing disc ML-DmD9
 
 0
wing disc ML-DmD16-c3
 
 0
wing disc ML-DmD21
 
 0
wing disc ML-DmD32
 
 0
haltere disc ML-DmD17-c3
 
 0
eye-antennal disc ML-DmD11
 
 0
antennal disc ML-DmD20-c5
 
 0
mixed discs ML-DmD4-c1
 
 0
CNS ML-DmBG1-c1
 
 1
CNS ML-DmBG2-c2
 
 6
tumorous blood cells mbn2
 
 0
ovary fGS/OSS
 
 0
ovary OSC
 
 1
ovary OSS
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 0
Schneider line 2 Sg4
 
 0
embryonic 1182-4H
 
 0
embryonic GM2
 
 1
embryonic Kc167
 
 0
embryonic S1
 
 1
embryonic S3
 
 0
leg disc CME L1
 
 0
wing disc CME-W2
 
 1
wing disc ML-DmD8
 
 0
wing disc ML-DmD9
 
 0
wing disc ML-DmD16-c3
 
 0
wing disc ML-DmD21
 
 0
wing disc ML-DmD32
 
 0
haltere disc ML-DmD17-c3
 
 0
eye-antennal disc ML-DmD11
 
 0
antennal disc ML-DmD20-c5
 
 0
mixed discs ML-DmD4-c1
 
 0
CNS ML-DmBG1-c1
 
 1
CNS ML-DmBG2-c2
 
 6
tumorous blood cells mbn2
 
 0
ovary fGS/OSS
 
 0
ovary OSC
 
 1
ovary OSS
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 0
Schneider line 2 Sg4
 
 0
embryonic 1182-4H
 
 0
embryonic GM2
 
 1
embryonic Kc167
 
 0
embryonic S1
 
 1
embryonic S3
 
 0
leg disc CME L1
 
 0
wing disc CME-W2
 
 1
wing disc ML-DmD8
 
 0
wing disc ML-DmD9
 
 0
wing disc ML-DmD16-c3
 
 0
wing disc ML-DmD21
 
 0
wing disc ML-DmD32
 
 0
haltere disc ML-DmD17-c3
 
 0
eye-antennal disc ML-DmD11
 
 0
antennal disc ML-DmD20-c5
 
 0
mixed discs ML-DmD4-c1
 
 0
CNS ML-DmBG1-c1
 
 1
CNS ML-DmBG2-c2
 
 6
tumorous blood cells mbn2
 
 0
ovary fGS/OSS
 
 0
ovary OSC
 
 1
ovary OSS
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Cell Line   Expression Level
Schneider line 2 S2R+
 
 
Schneider line 2 Sg4
 
 
embryonic 1182-4H
 
 
embryonic GM2
 
 
embryonic Kc167
 
 
embryonic S1
 
 
embryonic S3
 
 
leg disc CME L1
 
 
wing disc CME-W2
 
 
wing disc ML-DmD8
 
 
wing disc ML-DmD9
 
 
wing disc ML-DmD16-c3
 
 
wing disc ML-DmD21
 
 
wing disc ML-DmD32
 
 
haltere disc ML-DmD17-c3
 
 
eye-antennal disc ML-DmD11
 
 
antennal disc ML-DmD20-c5
 
 
mixed discs ML-DmD4-c1
 
 
CNS ML-DmBG1-c1
 
 
CNS ML-DmBG2-c2
 
 
tumorous blood cells mbn2
 
 
ovary fGS/OSS
 
 
ovary OSC
 
 
ovary OSS
 
 

hide modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 17
cold shock, 4-day adult
 
 16
heat shock, 4-day adult
 
 5
Cadmium 50 mM 6 hrs, larvae L3
 
 20
Cadmium 50 mM 12 hrs, larvae L3
 
 138
Cadmium 50 mM 48 hrs, 4-day adult
 
 4
Cadmium 100 mM 48 hrs, 4-day adult
 
 6
Copper 0.5 mM 12 hrs, larvae L3
 
 11
Copper 15 mM 48 hrs, 4-day adult
 
 9
Zinc 5 mM 12 hrs, larvae L3
 
 14
Zinc 4.5 mM 48 hrs, 4-day adult
 
 11
Ethanol 2.5% 3 hrs, larvae L3
 
 7
Ethanol 5% 3 hrs, larvae L3
 
 16
Ethanol 10% 3 hrs, larvae L3
 
 18
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 9
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 8
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 8
Paraquat 5 mM 48 hrs, 4-day adult
 
 12
Paraquat 10 mM 48 hrs, 4-day adult
 
 11
Rotenone 2 μg 12 hrs, larvae L3
 
 27
Rotenone 8 μg 12 hrs, larvae L3
 
 7
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 17
cold shock, 4-day adult
 
 16
heat shock, 4-day adult
 
 5
Cadmium 50 mM 6 hrs, larvae L3
 
 20
Cadmium 50 mM 12 hrs, larvae L3
 (138)
Cadmium 50 mM 48 hrs, 4-day adult
 
 4
Cadmium 100 mM 48 hrs, 4-day adult
 
 6
Copper 0.5 mM 12 hrs, larvae L3
 
 11
Copper 15 mM 48 hrs, 4-day adult
 
 9
Zinc 5 mM 12 hrs, larvae L3
 
 14
Zinc 4.5 mM 48 hrs, 4-day adult
 
 11
Ethanol 2.5% 3 hrs, larvae L3
 
 7
Ethanol 5% 3 hrs, larvae L3
 
 16
Ethanol 10% 3 hrs, larvae L3
 
 18
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 9
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 8
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 8
Paraquat 5 mM 48 hrs, 4-day adult
 
 12
Paraquat 10 mM 48 hrs, 4-day adult
 
 11
Rotenone 2 μg 12 hrs, larvae L3
 (27)
Rotenone 8 μg 12 hrs, larvae L3
 
 7
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 17
cold shock, 4-day adult
 
 16
heat shock, 4-day adult
 
 5
Cadmium 50 mM 6 hrs, larvae L3
 
 20
Cadmium 50 mM 12 hrs, larvae L3
 (138)
Cadmium 50 mM 48 hrs, 4-day adult
 
 4
Cadmium 100 mM 48 hrs, 4-day adult
 
 6
Copper 0.5 mM 12 hrs, larvae L3
 
 11
Copper 15 mM 48 hrs, 4-day adult
 
 9
Zinc 5 mM 12 hrs, larvae L3
 
 14
Zinc 4.5 mM 48 hrs, 4-day adult
 
 11
Ethanol 2.5% 3 hrs, larvae L3
 
 7
Ethanol 5% 3 hrs, larvae L3
 
 16
Ethanol 10% 3 hrs, larvae L3
 
 18
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 9
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 8
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 8
Paraquat 5 mM 48 hrs, 4-day adult
 
 12
Paraquat 10 mM 48 hrs, 4-day adult
 
 11
Rotenone 2 μg 12 hrs, larvae L3
 
 27
Rotenone 8 μg 12 hrs, larvae L3
 
 7
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 17
cold shock, 4-day adult
 
 16
heat shock, 4-day adult
 
 5
Cadmium 50 mM 6 hrs, larvae L3
 
 20
Cadmium 50 mM 12 hrs, larvae L3
 
 138
Cadmium 50 mM 48 hrs, 4-day adult
 
 4
Cadmium 100 mM 48 hrs, 4-day adult
 
 6
Copper 0.5 mM 12 hrs, larvae L3
 
 11
Copper 15 mM 48 hrs, 4-day adult
 
 9
Zinc 5 mM 12 hrs, larvae L3
 
 14
Zinc 4.5 mM 48 hrs, 4-day adult
 
 11
Ethanol 2.5% 3 hrs, larvae L3
 
 7
Ethanol 5% 3 hrs, larvae L3
 
 16
Ethanol 10% 3 hrs, larvae L3
 
 18
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 9
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 8
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 8
Paraquat 5 mM 48 hrs, 4-day adult
 
 12
Paraquat 10 mM 48 hrs, 4-day adult
 
 11
Rotenone 2 μg 12 hrs, larvae L3
 
 27
Rotenone 8 μg 12 hrs, larvae L3
 
 7
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 17
cold shock, 4-day adult
 
 16
heat shock, 4-day adult
 
 5
Cadmium 50 mM 6 hrs, larvae L3
 
 20
Cadmium 50 mM 12 hrs, larvae L3
 
 138
Cadmium 50 mM 48 hrs, 4-day adult
 
 4
Cadmium 100 mM 48 hrs, 4-day adult
 
 6
Copper 0.5 mM 12 hrs, larvae L3
 
 11
Copper 15 mM 48 hrs, 4-day adult
 
 9
Zinc 5 mM 12 hrs, larvae L3
 
 14
Zinc 4.5 mM 48 hrs, 4-day adult
 
 11
Ethanol 2.5% 3 hrs, larvae L3
 
 7
Ethanol 5% 3 hrs, larvae L3
 
 16
Ethanol 10% 3 hrs, larvae L3
 
 18
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 9
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 8
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 8
Paraquat 5 mM 48 hrs, 4-day adult
 
 12
Paraquat 10 mM 48 hrs, 4-day adult
 
 11
Rotenone 2 μg 12 hrs, larvae L3
 
 27
Rotenone 8 μg 12 hrs, larvae L3
 
 7
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 17
cold shock, 4-day adult
 
 16
heat shock, 4-day adult
 
 5
Cadmium 50 mM 6 hrs, larvae L3
 
 20
Cadmium 50 mM 12 hrs, larvae L3
 (138)
Cadmium 50 mM 48 hrs, 4-day adult
 
 4
Cadmium 100 mM 48 hrs, 4-day adult
 
 6
Copper 0.5 mM 12 hrs, larvae L3
 
 11
Copper 15 mM 48 hrs, 4-day adult
 
 9
Zinc 5 mM 12 hrs, larvae L3
 
 14
Zinc 4.5 mM 48 hrs, 4-day adult
 
 11
Ethanol 2.5% 3 hrs, larvae L3
 
 7
Ethanol 5% 3 hrs, larvae L3
 
 16
Ethanol 10% 3 hrs, larvae L3
 
 18
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 9
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 8
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 8
Paraquat 5 mM 48 hrs, 4-day adult
 
 12
Paraquat 10 mM 48 hrs, 4-day adult
 
 11
Rotenone 2 μg 12 hrs, larvae L3
 27
Rotenone 8 μg 12 hrs, larvae L3
 
 7
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 17
cold shock, 4-day adult
 
 16
heat shock, 4-day adult
 
 5
Cadmium 50 mM 6 hrs, larvae L3
 
 20
Cadmium 50 mM 12 hrs, larvae L3
 138
Cadmium 50 mM 48 hrs, 4-day adult
 
 4
Cadmium 100 mM 48 hrs, 4-day adult
 
 6
Copper 0.5 mM 12 hrs, larvae L3
 
 11
Copper 15 mM 48 hrs, 4-day adult
 
 9
Zinc 5 mM 12 hrs, larvae L3
 
 14
Zinc 4.5 mM 48 hrs, 4-day adult
 
 11
Ethanol 2.5% 3 hrs, larvae L3
 
 7
Ethanol 5% 3 hrs, larvae L3
 
 16
Ethanol 10% 3 hrs, larvae L3
 
 18
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 9
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 8
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 8
Paraquat 5 mM 48 hrs, 4-day adult
 
 12
Paraquat 10 mM 48 hrs, 4-day adult
 
 11
Rotenone 2 μg 12 hrs, larvae L3
 
 27
Rotenone 8 μg 12 hrs, larvae L3
 
 7
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 17
cold shock, 4-day adult
 
 16
heat shock, 4-day adult
 
 5
Cadmium 50 mM 6 hrs, larvae L3
 
 20
Cadmium 50 mM 12 hrs, larvae L3
 
 138
Cadmium 50 mM 48 hrs, 4-day adult
 
 4
Cadmium 100 mM 48 hrs, 4-day adult
 
 6
Copper 0.5 mM 12 hrs, larvae L3
 
 11
Copper 15 mM 48 hrs, 4-day adult
 
 9
Zinc 5 mM 12 hrs, larvae L3
 
 14
Zinc 4.5 mM 48 hrs, 4-day adult
 
 11
Ethanol 2.5% 3 hrs, larvae L3
 
 7
Ethanol 5% 3 hrs, larvae L3
 
 16
Ethanol 10% 3 hrs, larvae L3
 
 18
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 9
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 8
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 8
Paraquat 5 mM 48 hrs, 4-day adult
 
 12
Paraquat 10 mM 48 hrs, 4-day adult
 
 11
Rotenone 2 μg 12 hrs, larvae L3
 
 27
Rotenone 8 μg 12 hrs, larvae L3
 
 7
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Treatment   Expression Level
extended cold, 4-day adult
 
 
cold shock, 4-day adult
 
 
heat shock, 4-day adult
 
 
Cadmium 50 mM 6 hrs, larvae L3
 
 
Cadmium 50 mM 12 hrs, larvae L3
 
 
Cadmium 50 mM 48 hrs, 4-day adult
 
 
Cadmium 100 mM 48 hrs, 4-day adult
 
 
Copper 0.5 mM 12 hrs, larvae L3
 
 
Copper 15 mM 48 hrs, 4-day adult
 
 
Zinc 5 mM 12 hrs, larvae L3
 
 
Zinc 4.5 mM 48 hrs, 4-day adult
 
 
Ethanol 2.5% 3 hrs, larvae L3
 
 
Ethanol 5% 3 hrs, larvae L3
 
 
Ethanol 10% 3 hrs, larvae L3
 
 
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 
Paraquat 5 mM 48 hrs, 4-day adult
 
 
Paraquat 10 mM 48 hrs, 4-day adult
 
 
Rotenone 2 μg 12 hrs, larvae L3
 
 
Rotenone 8 μg 12 hrs, larvae L3
 
 

hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 75 )
For All Classical Alleles Show

Allele of DdcClassMutagenStocksKnown lesion
Ddc7amorphic allele - genetic evidence4 --
Ddc273 Yes
Ddcts13 --
DdcDE12 --
Ddck021042 Yes
Ddcts2heat sensitive loss of function allele2 --
DdcVA17
2 Yes
Ddc431 Yes
Ddce009271 --
Ddclo1hypomorphic allele - genetic evidence1 Yes
Ddc10amorphic allele - genetic evidence0 --
Ddc1amorphic allele - genetic evidence0 --
Ddc2amorphic allele - genetic evidence0 --
Ddc3amorphic allele - genetic evidence0 --
Ddc4amorphic allele - genetic evidence0 --
Ddc5amorphic allele - genetic evidence0 --
Ddc6amorphic allele - genetic evidence0 --
Ddc8amorphic allele - genetic evidence0 --
Ddc9amorphic allele - genetic evidence0 --
Ddc+40 Yes
Ddc110 --
Ddc120 --
Ddc130 --
Ddc140 --
Ddc150 --
Ddc160 --
Ddc170 --
Ddc180 --
Ddc190 --
Ddc200 --
Ddc210 --
Ddc220 --
Ddc230 --
Ddc240 --
Ddc250 --
Ddc260 --
Ddc280 --
Ddc290 --
Ddc2b0 Yes
Ddc300 --
Ddc310 --
Ddc320 --
Ddc330 --
Ddc340 --
Ddc350 --
Ddc360 --
Ddc370 --
Ddc380 --
Ddc390 --
Ddc40loss of function allele0 --
Ddc41loss of function allele0 --
Ddc42loss of function allele0 --
Ddc44
0 --
Ddc45
0 --
Ddcc064960 --
DdcC0 --
DdcOre0 Yes
DdcR110 Yes
DdcR120 Yes
DdcR160 Yes
DdcR180 Yes
DdcR200 Yes
DdcR240 Yes
DdcR250 Yes
DdcR270 Yes
DdcR300 Yes
DdcR330 Yes
DdcR60 --
DdcR90 Yes
DdcREhypermorphic allele - genetic evidence0 Yes
DdcRShypermorphic allele - genetic evidence0 --
Ddcts30 --
Ddcts40 --
Ddcts50 --
Ddcunspecified
0 --
hide Alleles Carried on Transgenic Constructs ( 70 )
For All Alleles Carried on Transgenic Constructs Show

Allele of DdcClassMutagenStocksKnown lesion
DdcGD11892 Yes
DdcJF023561 Yes
DdcScer\UAS.cTa1 Yes
Ddc+10bp0 Yes
Ddc+13bp0 Yes
Ddc+4.tCa0 Yes
Ddc+t7.50 Yes
Ddc+t7.80 Yes
Ddc+tOa0 --
Ddc5'Δ-1260 Yes
Ddc5'Δ-1450 Yes
Ddc5'Δ-1730 Yes
Ddc5'Δ-210(Δ-136,-60)0 Yes
Ddc5'Δ-210(Δ-166,-60)0 Yes
Ddc5'Δ-210(Δ-186,-60)0 Yes
Ddc5'Δ-210(Δ-83,-60)0 Yes
Ddc5'Δ-210(Δ-91,-60)0 Yes
Ddc7.5.T:Ivir\HA10 Yes
DdcABC.hs0 Yes
DdcAdh.-1320-690 Yes
DdcC70 Yes
DdcCmut1240 Yes
DdcDIS(-209)0 Yes
DdcDIS(-360)0 Yes
DdcDIS(-760)0 Yes
DdcDISinv(-360)0 Yes
DdcdsRNA.Scer\UAS.Sym0 Yes
DdcdsRNA.Scer\UAS.WIZ0 Yes
DdcdupIIA:III:IIB0 Yes
DdcdupIIA:III0 Yes
DdcdupIIA0 Yes
DdcEN3'Δ2590 Yes
DdcEN3'Δ3710 Yes
DdcEN3'Δ870 Yes
DdcEN5'Δ1990 Yes
DdcEN5'Δ2590 Yes
DdcEN5'Δ3950 Yes
DdcEN5'Δ4350 Yes
DdcEN5'Δ470 Yes
DdcHL7.T:Scer\GAL40 Yes
Ddchs.PS0 Yes
DdcI-38.Inv0 Yes
DdcI-380 Yes
DdcI-60.Inv0 Yes
DdcI-600 Yes
DdcIIB*0 Yes
DdcIm10 Yes
DdcIm20 Yes
DdcKK1002930 Yes
Ddcm10 Yes
DdcNIG.10697R0 Yes
DdcSERΔA0 Yes
DdcSERΔB0 Yes
DdcSERΔC0 Yes
DdcSERΔD0 Yes
DdcSERΔE0 Yes
DdcXba1(-1623)0 Yes
DdcΔ-136,-600 Yes
DdcΔ-1636,-15760 Yes
DdcΔ-1636,-15960 Yes
DdcΔ-166,-600 Yes
DdcΔ-186,-600 Yes
DdcΔ-208,-380 Yes
DdcΔ-208,-600 Yes
DdcΔ-209,-600 Yes
DdcΔ-209,-840 Yes
DdcΔ-82,-600 Yes
DdcΔ-83,-600 Yes
DdcΔ-91,-600 Yes
DdcΔIIB0 Yes
hide Aneuploid Aberrations
Disrupted in
Duplicated in
Not disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
reporter construct
NameExpression Data
P{ARP-11}No
P{ARP-11Δ}No
P{ARP-11Δ+4}No
P{ARP-11Δ+}No
P{Ddc.E(spl)-lacZ.Gbe.m8}No
P{Ddc-lacZ.B1}No
P{Ddc-lacZ.B2}No
P{Ddc-lacZ.B3}No
P{Ddc-lacZ.B4}No
P{Ddc-lacZ.be1}No
P{Ddc-lacZ.be2.A1}No
P{Ddc-lacZ.be2.A2}No
P{Ddc-lacZ.be2.B1}No
P{Ddc-lacZ.be2}No
P{Ddc-lacZ.BH}No
P{Ddc-lacZ.BT}No
P{Ddc-lacZ.ET}No
P{Ddc-lacZ.ET-EcRE.mut}No
P{Ddc-lacZ.ET-ΔEcRE}No
P{Ddc-lacZ.H10}No
P{Ddc-lacZ.RH}No
P{Ddc-lacZ.SH}No
P{Ddc-lacZ.SH-ΔBR}No
P{Ddc-lacZ.SH-ΔBsR}No
P{Ddc-lacZ.SH-ΔEcRE}No
P{Ddc-lacZ.SH-ΔZ2}No
P{Ddc-lacZ.ΔDHR38}No
P{Ddc-lacZ.ΔInA}No
P{Ddc-lacZ.ΔInB}No
heat-shock construct
NameExpression Data
P{Hsp70/Ddc}NA
P{Hsp70/DdcABC}NA
UAS construct
NameExpression Data
P{GD1189}NA
P{KK100293}NA
P{TRiP.JF02356}NA
P{UAS-Ddc.RNAi.Sym}NA
P{UAS-Ddc.RNAi.WIZ}NA
P{UAS-Ddc.T}NA
GAL4 construct
NameExpression Data
P{Ddc-GAL4.HL5}No
P{Ddc-GAL4.HL7}No
P{Ddc-GAL4.HL9}No
P{Ddc-GAL4.L}No
characterization construct
NameExpression Data
P{Bn.1-hsp70-lacZ}NA
P{Bn.2-hsp70-lacZ}NA
P{Bn.3-hsp70-lacZ}NA
P{Ddc1/4}NA
P{Ddc1}NA
P{Ddc4}NA
P{Ddc7.6}NA
P{Ddc5'Δ-126}NA
P{Ddc5'Δ-145}NA
P{Ddc5'Δ-173}NA
P{Ddc5'Δ-210(Δ-83,-60)}NA
P{Ddc5'Δ-210(Δ-91,-60)}NA
P{Ddc5'Δ-210(Δ-136,-60)}NA
P{Ddc5'Δ-210(Δ-166,-60)}NA
P{Ddc5'Δ-210(Δ-186,-60)}NA
P{Ddc+47.6}NA
P{Ddc+10bp}NA
P{Ddc+13bp}NA
P{Ddc+,Adh+}NA
P{DdcCmut124}NA
P{DdcDIS(-209)}NA
P{DdcDIS(-360)}NA
P{DdcDIS(-760)}NA
P{DdcDISinv(-360)}NA
P{DdcdupIIA/III/IIB}NA
P{DdcdupIIA/III}NA
P{DdcdupIIA}NA
P{DdcEN3'Δ87}NA
P{DdcEN3'Δ259}NA
P{DdcEN3'Δ371}NA
P{DdcEN5'Δ47}NA
P{DdcEN5'Δ199}NA
P{DdcEN5'Δ259}NA
P{DdcEN5'Δ395}NA
P{DdcEN5'Δ435}NA
P{DdcIIB*}NA
P{DdcSERΔA}NA
P{DdcSERΔB}NA
P{DdcSERΔC}NA
P{DdcSERΔD}NA
P{DdcSERΔE}NA
P{DdcXba1(-1623)}NA
P{DdcΔ-82,-60}NA
P{DdcΔ-83,-60}NA
P{DdcΔ-91,-60}NA
P{DdcΔ-136,-60}NA
P{DdcΔ-166,-60}NA
P{DdcΔ-186,-60}NA
P{DdcΔ-209,-60}NA
P{DdcΔ-209,-84}NA
P{DdcΔ-1636,-1576}NA
P{DdcΔ-1636,-1596}NA
P{DdcΔIIB}NA
P{Ddc-DsRed.0.47.APm}NA
P{Ddc-DsRed.Gap}NA
P{DdcP10}NA
P{Hsp70/ftz1.DdcB(l)}NA
P{Hsp70/ftz1.DdcB(s)}NA
P{Hsp70/ftz1.DdcBC(l)}NA
P{Hsp70/ftz1.DdcBC(s)}NA
P{I(Δ-208,-38)}NA
P{I(Δ-208,-60)}NA
P{Iinv(Δ-208,-38)}NA
P{Iinv(Δ-208,-60)}NA
P{Im1(Δ-208,-38)}NA
P{Im2(Δ-208,-38)}NA
P{invDdc7.6}NA
P{m1}NA
P{NIG.10697R}NA
P{pC2}NA
P{pC7}NA
P{Δ(-208,-38)}NA
P{Δ(-208,-60)}NA
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap
miscellaneous insertions
hide Gene Ontology: Function, Process & Cellular Component ( 18 unique terms )
hide Terms Based on Experimental Evidence ( 12 terms )
Molecular Function
CV term
References
Biological Process
CV term
References
inferred from mutant phenotype
inferred from genetic interaction with Hn
inferred from genetic interaction with Pk92B
inferred from mutant phenotype
inferred from expression pattern
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component ( 0 terms)
hide Terms Based on Predictions or Assertions ( 7 terms )
Molecular Function
CV term
References
non-traceable author statement
traceable author statement
Biological Process
CV term
References
non-traceable author statement
non-traceable author statement
non-traceable author statement
Cellular Component ( 0 terms)
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
protein-protein
Interacting group
Assay
References
anti tag coimmunoprecipitation, peptide massfingerprinting
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
Ddc allele
Gene
References
unspecified
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
hide OrthoDB Orthologs (55) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
hideOrthologs in Drosophila Species (EOG6XSM8K)
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly 
 
 
Drosophila simulans
 
Y
 
Drosophila sechellia
 
Y
 
Drosophila erecta
 
Y
 
Drosophila yakuba
 
Y
 
Drosophila ananassae
 
Y
 
Drosophila pseudoobscura pseudoobscura
 
Y
 
Drosophila persimilis
 
Y
 
Drosophila willistoni
 
Y
 
Drosophila virilis
 
Y
 
Drosophila mojavensis
 
Y
 
Drosophila grimshawi
 
Y
 
hideOrthologs in non-Drosophila Dipterans (EOG62V8QJ)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Aedes aegypti
Yellow fever mosquito 
 
Anopheles gambiae
Malaria mosquito 
 
Culex quinquefasciatus
Southern house mosquito 
 
hideOrthologs in non-Dipteran Insects (EOG62BW4V)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Apis mellifera
Western honey bee 
Amel\Ddc
 
Nasonia vitripennis
Parasitic wasp 
Nvit\Nasvi2EG002599
 
Acromyrmex echinatior
Panamanian leafcutter ant 
Aech\AECH18746
 
Atta cephalotes
Leafcutter ant 
Acep\ACEP12044
 
Camponotus floridanus
Florida carpenter ant 
Cflo\CFLO13440
 
Harpegnathos saltator
Jerdons jumping ant 
Hsal\HSAL18350
 
Linepithema humile
Argentine ant 
Lhum\LH20345
 
Pogonomyrmex barbatus
Red harvester ant 
Pbar\PB15926
 
Solenopsis invicta
Red fire ant 
Sinv\SINV21571
 
Solenopsis invicta
Red fire ant 
Sinv\SINV21497
 
Acyrthosiphon pisum
Pea aphid 
 
Bombyx mori
Silkmoth 
 
Pediculus humanus
Human body louse 
 
Tribolium castaneum
Red flour beetle 
 
hideOrthologs in non-Insect Arthropods (EOG6QRFKB)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Daphnia pulex
Water flea 
 
Daphnia pulex
Water flea 
 
Daphnia pulex
Water flea 
 
hideOrthologs in non-Arthropod Metazoa (EOG6S2611)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Caenorhabditis elegans
Nematode 
Y
Caenorhabditis elegans
Nematode 
Y
Caenorhabditis elegans
Nematode 
Y
Caenorhabditis elegans
Nematode 
Y
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Xenopus tropicalis
Western clawed frog 
Y
Xenopus tropicalis
Western clawed frog 
Y
Gallus gallus
Domestic chicken 
Y
Gallus gallus
Domestic chicken 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Homo sapiens
Human 
Y
Homo sapiens
Human 
Y
hide Human Orthologs (2)
Gene
OMIM
HGNC
 
 
 
 
hideAAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism
Gene
Drosophila simulans
Drosophila sechellia
Drosophila erecta
Drosophila yakuba
Drosophila ananassae
Drosophila pseudoobscura pseudoobscura
Drosophila persimilis
Drosophila willistoni
Drosophila virilis
Drosophila mojavensis
Drosophila grimshawi
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 25 )
Bloomington
3168
Harvard
Kyoto
106889
VDRC
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 65 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
hide Other Information
hide Discoverer
Wright, 1974.
 
hide Etymology
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Source for merge of: Ddc l(2)k02104
Additional comments
hide Other Comments
The consequences of HRB overexpression and absence in living flies is examined. Overexpression of Hrb87F does alter the splicing of Ddc pre-mRNA, indicating the overexpressed protein can reproduce the in vitro effect of excess protein.
Temporal profile of gene expression is altered in Eip74EF mutant background.
Hormonal induction of Ddc in the epidermis is mediated by genes of the Broad complex.
Tissue specific elements necessary for the CNS expression of Ddc map to Ddc intron ab.
RT-PCR procedure designed to quantitate the Ddc epidermal mRNA independent of the neural transcript level demonstrates Ddc primary transcript is spliced by two alternative pathways in neural and epidermal tissue.
Overexpression of Hrb98DE leads to skipping of all internal exons in the Ddc pre-mRNA in vivo, regardless of the normal Ddc splice site choice.
Located between coordinates +0.1 and +4.1.
The S element in the Ddc promoter region may be the fifth in the set of cis-acting sequences in the complex regulatory domain known to specify epidermal Ddc expression during development.
Splicing of Ddc RNA has been studied in B5228 mutant embryos.
Analysis of Ddc-ftz fusion constructs shows that Ddc intron ab and exon B are sufficient to regulate Ddc alternative splicing.
Ecdysteroid-regulated gene.
P-element mediated expression of Ddc under the control of an uninduced heat shock promoter demonstrates that regulation of Ddc splicing in the CNS is at the level of the whole tissue.
65kb around Ddc used in a study that showed that restriction site distribution shows no departure from that expected under the equilibrium model, but insertions and deletions are rarer than predicted indicating that they are deleterious. Variation in level of Ddc activity is twofold from the highest to the lowest, and restriction enzyme patterns are linked to particular activities.
Profile of zfh2 expression in the larval CNS shows intriguing overlap with Ddc expression in specific serotonin and dopamine neurons. In vitro mutagenesis of the Ddc 5' region dissected the functional redundancy of two serotonin response regulatory regions. The product of zfh2 binds to a protein binding site in the Ddc promoter.
Comparison of CpG distribution in the coding region of 121 genes from six species supports the mCpG mutational hotspot explanation of CpG suppression in methylated species at position II-III and III-I.
Derepression of Ddc expression in the glia cells requires the presence of promoter sequences -209 to -25.
Ddc mutants that cannot bind vvl can distinguish between dopaminergic and serotonic neurons and defines anatomical subsets of dopaminergic neurons that regulate Ddc expression.
Genetic mosaics were used to determine the distribution of Ddc and 5HT. Phenotypic mosaicism was observed for both Ddc and 5HT immunoreactivity. Ddc neurons were always 5HT neurons, but some 5HT neurons were devoid of Ddc activity, though were always found in close proximity to other Ddc neurons. Results suggest that in vivo uptake mechanisms are responsible for 5HT accumulation in the neurons devoid of Ddc immunoreactivity.
Ddc sequences upstream of -2200bp are not required for normal neuronal expression but deletion to -760bp causes a near total loss of neuron specific expression. Hypoderm Ddc activity remains unchanged. A distal regulatory element has been identified extending from -1019 to -1623 bp. The region possesses enhancer-like properties and is essential for normal neuron-specific expression.
Element I of the Ddc promoter is responsible for stimulating Ddc expression in the CNS, but Ecol\lacZ reporter gene constructs demonstrate that it is not sufficient alone to confer CNS expression on an heterologous promoter.
Ddc affects cuticle formation.
amd is located 2kb distal to Ddc.
The 3' end of the CG10561 gene overlaps with the 3' end of the Ddc gene. Overall orientation not stated: Ddc+ l(2)37Cc- Overall orientation not stated: Ddc+ CG10561-
Ddc and amd share extensive sequence homology and are the products of a gene duplication event. Dot matrix analysis demonstrates there is very little sequence homology between Ddc or amd, and l(2)37Cc or CG10561 transcripts.
Mutant alleles are useful as markers in clonal analysis.
Genetic and immunological evidence suggest that Ddc gene product is required for cuticle sclerotization during late embryogenesis and the early first larval instar.
Of 16 Ddc alleles tested, none show dominant hypersensitivity to α-methyl dopa.
Ddc is required for female fertility and the requirement is ovary-autonomous.
Ddc and amd are non-allelic.
Ddc mutant alleles do not give rise to a dominant α-MD hypersensitive phenotype.
Structural gene for dopa decarboxylase (DDC, 3-4-dihydroxy-L-phenylalanine-carboxylase) which catalyzes the decarboxylation of dopa to dopamine (Lunan and Mitchell, 1969) and 5-hydroxytryptophan to serotonin (5-hydroxytryptamine) but not tyrosine to tyramine (Livingstone and Tempel, 1983). Native DDC isolated from mature larvae is a homodimer with subunit molecular weight 54kD (Clark et al., 1978). Distinct DDC isoforms are generated in the CNS and hypoderm by alternate splicing of the Ddc primary transcript; the CNS isoform differs by the addition of 35 amino acids at the amino terminus (Morgan, Johnson and Hirsh, 1986). The predicted subunit molecular weights of these are 57.1 and 53.4kD, respectively. DDC requires pyridoxal-5-phosphate for activity and is strongly inhibited by heavy-metal ions and the sulfhydryl reagent, N-ethylmaleimide. Initial velocity constants determined by Black and Smarrelli (1986). The dopamine produced by DDC is necessary to effect sclerotization of the cuticle, being further metabolized both to N-acetyldopamine and N-β-alanyldopamine, which after oxidation to their respective quinones, crosslink cuticular proteins. Thus in adults and white prepupae more than 90% of the DDC activity is located in the epidermis (Lunan and Mitchell, 1969; Scholnick, Morgan and Hirsh, 1983). Some DDC activity (about 5%) is found in the central nervous system of white prepupae and adults where it produces the neurotransmitters dopamine and serotonin (Wright, 1977; Livingstone and Tempel, 1983; White and Valles, 1985). The limited amounts found in the ovaries (Wright, Steward, Bentley and Adler, 1981) and proventriculus (Wright and Wright, 1978) are localized in associated neural ganglia (Konrad and Marsh, 1987). Five peaks of DDC activity evident during development: at the end of embryogenesis, the two larval molts, pupariation and eclosion (Marsh and Wright, 1980; Kraminsky et al., Sage, O'Conner and Hodgetts, 1980). The largest peak, which occurs at pupariation, is induced by a coincident ecdysone peak of the molting larvae (Marsh and Wright, 1980) and has been shown to be attributable to a rapid increase in translatable DDC mRNA following administration of 20-0H-ecdysone (Kraminsky et al., 1980). Ecdysone induces Ddc expression in the mature larval epidermis within two to four hrs (Karminsky et al., 1980; Clark et al., 1986). Since cycloheximide addition is sufficient to largely abolish this induction, it appears that this response is an indirect action of ecdysone. A different response of Ddc to ecdysone occurs in cultured imaginal discs; Ddc induction occurs only subsequent to withdrawal of the hormone (Clark et al., 1986). Most mutations in Ddc are homozygous or hemizygous lethal. The effective lethal phases of the first eight lethal alleles, Ddc1-Ddc8, were almost identical. As hemizygotes over Df(2L)TW130 almost all mortality is late embryonic with actively moving larvae, exhibiting unpigmented cephalopharyngeal apparatuses and denticle belts, unable to hatch. When homozygous there is a fairly uniform shift in effective lethal phases with mean mortalities from all eight alleles in the cross of Ddcn/CyO x Ddcn/cn bw being 13.6% embryonic, 14.1% larval and 4.8% pupal (Wright and Wright, 1978). Many larvae hemizygous for lethal alleles, or homozygous deficient for Ddc, when mechanically released from the egg membranes, continue development to the 3rd larval instar and to the pharate adult stage. Genotypes which produce individuals with drastically reduced DDC activities (about 0.5-5% of wild type) exhibit an 'escaper' phenotype characterized by incomplete pigmentation and sclerotization of the cuticle; developmental time can be prolonged for as many as four or five days; puparia are easily scored showing melanization at each end of the greenish-gray pupa case; adults often die or get stuck in the food within 24 hr of eclosion; macrochaetae may be very thin, long and straw-colored or colorless; the whole body remains light, i.e., doesn't take on its normal pigmentation; abdominal markings are apparent but do not darken; upon aging a few hours wing axillae become melanized similar to the phenotype of sp, leg joints also become melanized perhaps due to the phenoloxidase wound reaction brought on by ruptures of weakened cuticle; flies walk on tibias rather than tarsi, but leg movements appear to be coordinated (Wright, Bewley and Sherald, 1976). Genotypes that produce flies exhibiting the 'escaper' phenotype include heteroallelic intragenic complementing heterozygotes with less than 5% of the expected number of survivors (Wright, Bewley and Sherald, 1976), hemizygotes of the temperature-sensitive allele Ddcts2 raised continuously at 22oC or 25oC, or homozygotes for Ddcts1 or Ddcts2 exposed to the restrictive temperature 30oC for 24- or 48-hour pulses at the end of the pupal stage (Wright). Ddc temperature-sensitive mutants have been reported to show reduced lea
 
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hide Synonyms & Secondary IDs ( 23 )
Reported As
Symbol Synonym
Dopa decarboxylase
l(2)37Bl
 
l(2)37Ch
 
l(2)k02104
 
Name Synonym
3,4-Dihydroxyphenylalanine decarboxylase
aromatic L-amino acid decarboxylase
Dopadecarboxylase
Dopa Decarboxylase
dopa-decarboxylase
dopamine decarboxylase
transcription unit No. 3
Secondary FlyBase IDs
  • FBgn0022245
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hide Recent research papers ( 23 )
Chen et al., 2013, Genetics 193(1): 159--176
Dispensable, Redundant, Complementary, and Cooperative Roles of Dopamine, Octopamine, and Serotonin in Drosophila melanogaster. [FBrf0220415]
Aso et al., 2012, PLoS Genet. 8(7): e1002768
Three dopamine pathways induce aversive odor memories with different stability. [FBrf0218860]
Chen et al., 2012, Science 335(6069): 678--685
Visualizing long-term memory formation in two neurons of the Drosophila brain. [FBrf0217453]
Gangishetti et al., 2012, Insect Mol. Biol. 21(3): 283--295
The transcription factor Grainy head and the steroid hormone ecdysone cooperate during differentiation of the skin of Drosophila melanogaster. [FBrf0218253]
Hazelett et al., 2012, G3 (Bethesda) 2(7): 789--802
Comparison of Parallel High-Throughput RNA Sequencing Between Knockout of TDP-43 and Its Overexpression Reveals Primarily Nonreciprocal and Nonoverlapping Gene Expression Changes in the Central Nervous System of Drosophila. [FBrf0219102]
Keene and Masek, 2012, Neuroscience 222: 173--180
Optogenetic induction of aversive taste memory. [FBrf0219325]
Liu et al., 2012, Nature 488(7412): 512--516
A subset of dopamine neurons signals reward for odour memory in Drosophila. [FBrf0219314]
Palgi et al., 2012, BMC Genomics 13: 134
Gene expression analysis of Drosophilaa Manf mutants reveals perturbations in membrane traffic and major metabolic changes. [FBrf0218515]
Paré et al., 2012, PLoS ONE 7(5): e36254
The functions of grainy head-like proteins in animals and fungi and the evolution of apical extracellular barriers. [FBrf0218280]
Rynes et al., 2012, Mol. Cell. Biol. 32(19): 3949--3962
Activating transcription factor 3 regulates immune and metabolic homeostasis. [FBrf0219385]
Anh et al., 2011, J. Biol. Chem. 286(38): 33244--33251
Essential role of duox in stabilization of Drosophila wing. [FBrf0215569]
Bang et al., 2011, PLoS Genet. 7(3): e1001346
Dopamine signalling in mushroom bodies regulates temperature-preference behaviour in Drosophila. [FBrf0213392]
Becnel et al., 2011, PLoS ONE 6(6): e20800
The Serotonin 5-HT(7)Dro Receptor Is Expressed in the Brain of Drosophila, and Is Essential for Normal Courtship and Mating. [FBrf0213968]
Ferdousy et al., 2011, Neurobiol. Disease 41(3): 669--677
Drosophila Ube3a regulates monoamine synthesis by increasing GTP cyclohydrolase I activity via a non-ubiquitin ligase mechanism. [FBrf0212886]
Geiger et al., 2011, PLoS ONE 6(11): e28349
Hole-in-One Mutant Phenotypes Link EGFR/ERK Signaling to Epithelial Tissue Repair in Drosophila. [FBrf0216857]
Kim and McGinnis, 2011, Proc. Natl. Acad. Sci. U.S.A. 108(2): 650--655
Phosphorylation of Grainy head by ERK is essential for wound-dependent regeneration but not for development of an epidermal barrier. [FBrf0214191]
Lee et al., 2011, Proc. Natl. Acad. Sci. U.S.A. 108(33): 13794--13799
Serotonin-mushroom body circuit modulating the formation of anesthesia-resistant memory in Drosophila. [FBrf0214737]
Liu et al., 2011, Hum. Mol. Genet. 20(20): 3933--3942
Inhibitors of LRRK2 kinase attenuate neurodegeneration and Parkinson-like phenotypes in Caenorhabditis elegans and Drosophila Parkinson's disease models. [FBrf0215809]
Loeschcke et al., 2011, J. Insect Physiol. 57(9): 1227--1231
Consistent effects of a major QTL for thermal resistance in field-released Drosophila melanogaster. [FBrf0215035]
Lorbeck et al., 2011, PLoS ONE 6(4): e18412
Microarray analysis uncovers a role for tip60 in nervous system function and general metabolism. [FBrf0213446]
Ortega-Arellano et al., 2011, Neurochem. Res. 36(6): 1073--1086
Life Span and Locomotor Activity Modification by Glucose and Polyphenols in Drosophila melanogaster Chronically Exposed to Oxidative Stress-stimuli: Implications in Parkinson's Disease. [FBrf0213572]
Sekine et al., 2011, J. Cell Sci. 124(17): 3006--3016
p38 MAPKs regulate the expression of genes in the dopamine synthesis pathway through phosphorylation of NR4A nuclear receptors. [FBrf0215011]
Seugnet et al., 2011, Sleep (Rochester) 34(2): 137--146
Sleep deprivation during early-adult development results in long-lasting learning deficits in adult Drosophila. [FBrf0212925]
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