A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\Dfd

General Information
SymbolDmel\DfdSpeciesD. melanogaster
NameDeformedAnnotation symbolCG2189
Feature typeprotein_coding_geneFlyBase IDFBgn0000439
Gene Model StatusCurrent Stock availability 40 publicly available
Also Known AsDmDfd
Genomic Location
Chromosome (arm)3RRecombination map3-47.5
Cytogenetic map84A5-84A5Sequence location3R:2,617,558..2,628,150 [+]

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Automatically generated summary

See sections below for more information
The gene Deformed is referred to in FlyBase by the symbol Dmel\Dfd (CG2189, FBgn0000439). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: RNA polymerase II regulatory region sequence-specific DNA binding; activating transcription factor binding; sequence-specific DNA binding; RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity. There is experimental evidence that it is involved in the biological process: head development; embryonic morphogenesis; embryo development; brain development; negative regulation of transcription from RNA polymerase II promoter; induction of apoptosis; positive regulation of transcription from RNA polymerase II promoter. 44 alleles are reported. The phenotypes of these alleles are annotated with: organ system subdivision; embryonic segment; organ system; thoracic segment; cephalopharyngeal skeleton; embryonic gnathal segment; external compound sense organ; antennal segment; larval head segment; nervous system. It has one annotated transcript and one annotated polypeptide. Protein features are: Homeobox protein, antennapedia type; Homeobox protein, antennapedia type, conserved site; Homeobox, conserved site; Homeodomain; Homeodomain, metazoa; Homeodomain-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed within 00-18 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head. Comments on Affy2 ProbeSet: ProbeSet 1633869_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Dfd. Gene sequence location is 3R:2617558..2628150.

User Contributed Data
External Summaries
hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
Dfd: Deformed
thumb
Dfd: Deformed
From Bridges and Morgan, 1923, Carnegie Inst. Washington Publ. No. 327: 94.
Null mutations act as recessive lethals. Homozygous or hemizygous animals die at the end of embryogenesis and show a spectrum of defects in the head. There are no discernible defects in the trunk. The head defects are associated with missing structures normally derived from the mandibular and maxillary segments, the dorsal lateral papillae of the maxillary sense organ, the mouth hooks, and the maxillary cirri. The remaining gnathal structures are present albeit disarranged likely due to abnormalities in the movements associated with head involution. A weak homeotic transformation (30-50% penetrance) has also been noted in animals hemizygous for a breakpoint-associated revertant of the single dominant gain-of-function allele (Dfdrv1). The phenotype is an apparent transformation of the H piece and lateral-graten which appear to be replaced by cephalopharyngeal plates. This phenotype has not been observed in any other mutant genotype and the reason for its low-penetrance production by this particular allele is not known. X-ray-induced somatic clones of Dfd- cells have shown that the locus is also required for adult head development. These cells develop normally in the thorax and abdomen but do not form structures in the ventral anterior aspect of the head; specifically the vibrissae and maxillary palps. Clones in the dorsal posterior part of the head form ectopic bristles which have been interpreted as a head to thoracic transformation. A temperature-conditional allele has been used to define two temperature-critical periods for Dfd+ activity. The first is during embryogenesis during segmentation and head involution, while the second occurs in the late third instar larval through mid pupal stages. These times correlate nicely with the observed cuticular defects in mutant animals and the times of peak gene product accumulation. There is a single dominant gain-of-function allele which causes defects in the ventral aspects of the adult head similar to those seen in the Dfd- head clones mentioned above. There are no defects seen in the posterior of the head nor does this allele cause any embryonic or larval defects as a heterozygote, homozygote, or hemizygote. This allele is associated with a group of B104 (roo) insertion elements (ca. 50 kb of inserted DNA) as well as a duplication of the 3 exons of the Dfd transcription unit (see below). The mutant causes an extended spatial domain of expression of the locus into the eye portion of the eye-antennal disc as compared to the pattern seen in normal animals. The precise cause-effect relationship between the observed molecular defect and the mutant phenotype is not known except that partial deletion of the B104 elements but not the 3 end duplication causes a reversion of the dominant phenotype and has no apparent effect on the wild type function of the resident Dfd gene. This dominant allele has been reverted and these revertants act as a simple recessive loss-of-function alleles with the one exception noted above. The Dfd transcript is initially detected at the blastoderm stage in a band of cells at the position of the future cephalic furrow. This RNA shows maximal accumulation from 6-12 hours of embryogenesis when it is found in the mandibular and maxillary lobes, as well as in the subesophageal reigon of the CNS. The amount of Dfd RNA diminishes through the first and second larval instars and peaks again during the third instar. At this point, it is found in the peripodial membrane cells of the eye-antennal discs. The cells which accumulate the RNA are those which have been fate mapped to give rise to the adult-head-capsule structures which are defective in Dfd- clones. Antibodies raised to Dfd protein have shown a similar pattern of accumulation to that seen for the RNA. The protein is first detected in cellular blastoderm stage in a stripe of six cells which circumscribes the embryo. As germ-band elongation proceeds and segmentation becomes evident Dfd protein is detected in the mandibular and maxillary lobes and a portion of the dorsal ridge. During germ-band shortening protein is no longer detectable in the mandibular lobe or in the anterior lateral aspect of the maxillary lobe. The process of head involution carries the Dfd-expressing cells interiorly where they are found in portions of the pharynx at the end of embryogenesis. Dfd-positive cells are also found in the subesophageal region of the CNS in the maxillary ganglion. This expression pattern has been shown to be dependent on the prior expression of the gap and pair-rule segmentation genes for its inception and on an autogenous regulatory element upstream of the Dfd transcription initiation site for the maintenance of Dfd expression into the later stages of embryogenesis. Immunostaining of imaginal discs shows Dfd- positive cells in the peripodial membrane of the eye-antennal discs with no detectable accumulation in the disc proper. There are also a few cells in the stalk of the labial discs which appear to accumulate Dfd protein. The Dfd cDNA driven by a heat shock promotor has been returned to flies and used to ectopically express Dfd protein. Animals carrying this construct subjected to heat shock produce ectopic mouth hooks and maxillary cirri in the ventral aspect of their thoracic segments, two structures missing in Dfd- animals. There is no phenotypic affect on abdominal pattern; however, head development is severely disrupted in heat-pulsed animals.
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Description
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FB2013_03
FB2013_02
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hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
84A5-84A5  
Limits computationally determined from genome sequence between P{PZ}pb04498 and P{lacW}l(3)L2100L2100  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
84A-84B  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
3-47.5
 
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\Dfd for information on other features GBrowse View Help
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0081621 FBpp0081138
Comments on Gene Model
Gene model reviewed during 5.49
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0081621
  2739
  586
Additional Transcript Data & Comments
Reported size (kB)
2.8 (northern blot)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
Dfd-PA  
FBpp0081138  
63.4  
586  
6.92  
Additional Polypeptide Data & Comments
Reported size (kDa)
586 (aa); 64 (kD predicted)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
protein binding site
bound_moiety=Dfd-XP
evidence=experimental
comment=Moderate affinity Dfd protein binding site; binding site B, TF:R03026
comment=binding site B, TF:R03026
protein binding site
evidence=experimental
comment=binding site C, TF:R03027
bound_moiety=Dfd-XP
comment=Moderate affinity Dfd protein binding site; binding site C, TF:R03027
protein binding site
evidence=experimental
comment=binding site D, TF:R03028
bound_moiety=Dfd-XP
comment=High affinity Dfd protein binding site; binding site D, TF:R03028
protein binding site
comment=Dfd protein binding site within module E of the Dfd EAE (epidermal autoregulatory element).
evidence=experimental
bound_moiety=Dfd-XP
protein binding site
evidence=experimental
bound_moiety=Deaf1-XP
comment=Region of module E of the Dfd EAE (epidermal autoregulatory element) bound by Deaf1 protein; strongest binding occurs at the 3' end of the region
protein binding site
protein binding site
protein binding site
protein binding site
protein binding site
protein binding site
protein binding site
protein binding site
protein binding site
protein binding site
bound_moiety=Dfd-XP
comment=High affinity Dfd protein binding site; binding site A, TF:R03025
evidence=experimental
regulatory region
regulatory region
regulatory region
regulatory region
regulatory region
comment=EAE, epidermal autoregulatory element; drives expression in the epidermis of the maxillary and mandibular segments in a Dfd-dependent manner. Regulatory element mapped to a restriction fragment; position of restriction fragment on reference sequence inferred by FlyBase curator
evidence=experimental
linked_to=XbaI-XbaI_rfrag
regulatory region
comment=Module D of the Dfd EAE (epidermal autoregulatory element); drives expression in regions derived from the posterior part of the maxillary segment at late embryonic stages after head involution. Regulatory element mapped to a restriction fragment; position of restriction fragment on reference sequence inferred by FlyBase curator
evidence=experimental
linked_to=HindIII-HindIII_rfrag
regulatory region
comment=Module E of the Dfd EAE (epidermal autoregulatory element); drives expression in the posterior part of the maxillary segment. Regulatory element mapped to a restriction fragment; position of restriction fragment on reference sequence inferred by FlyBase curator
evidence=experimental
linked_to=HindIII-HindIII_rfrag
regulatory region
linked_to=HindIII-XbaI_rfrag
comment=Module F of the Dfd EAE (epidermal autoregulatory element); drives expression in the posterior part of the maxillary segment. Regulatory element mapped to a restriction fragment; position of restriction fragment on reference rsequence inferred by FlyBase curator
evidence=experimental
regulatory region
comment=NAE, neural autoregulatory enhancer; drives expression in the subesophageal ganglion of the embryonic central nervous system. Regulatory element mapped to a restriction fragment; position of restriction fragment on reference sequence inferred by FlyBase curator
evidence=experimental
linked_to=BamHI-KpnI_rfrag
regulatory region
comment=NAE (neural autoregulatory enhancer) subfragment; drives expression in the subesophageal ganglion in a subset of the cells that exhibit expression under the NAE. Element mapped to a restriction fragment; position of restriction fragment on reference sequence inferred by FlyBase curator
evidence=experimental
linked_to=PstI-KpnI_rfrag
regulatory region
regulatory region
regulatory region
regulatory region
regulatory region
regulatory region
regulatory region
regulatory region
hide External Data
Linkouts
Crossreferences
EPD - Eukarytoic Promoter Database, an annotated collection of POL II promoters
hide Expression Data
hideTranscript Expression
No Assay Recorded
Stage
Tissue/Position (including subcellular localization)
Reference
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
Comment:anlage in statu nascendi
Comment:anlage in statu nascendi
Comment:anlage in statu nascendi
radioisotope in situ
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Dfd transcripts are detected in a small patch of cells in the posterior part of the labial segment, and, in some cases, in the posterior part of the prothoracic segment in Scr tsh mutants.
The distribution of transcripts appears to be unaffected by mutations in the tsh gene.
During the cellular blastoderm stage, Dfd transcripts are located in a 6-7 cell-wide band at 65-75% egg length which includes parasegment 1. In stages 9,10, before the gnathal buds form, Dfd is expressed in parasegment 1 and the region anterior to it and is found in both ecotodermal and mesodermal cells. By stage 11, Dfd is expressed in the mandibular and maxillary buds. Expression anterior to PS1 has declined and Dfd expression defines parasegment 1. Neural derivatives of PS1 also express Dfd transcripts. The Dfd pattern established by stage 11 persists until hatching. In larvae, transcripts are observed in the eye-antennal disc in the region corresponding to the primordium of the maxillary palp and in the peripodial membrane.
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Dfd protein is first detected in cellular blastoderm embryos in a 6 cell wide stripe encircling the embryo. Early in gastrulation, some of these Dfd-expressing cells invaginate to form the cephalic furrow. Before full germ band extension, a differential posterior border of Dfd expression occurs. The lateral expression boundary extends 2-3 cells farther posteriorly than the ventral boundary. The lateral boundary appears to mark the future outlines of the maxillary segment while the ventral expression boundary corresponds to the parasegment 1 boundary. By stage 11, Dfd protein expression is mainly confined to the maxillary and mandibular segments laterally and to parasegments 0 and 1 ventrally. There is also some ventral expression in the hypopharyngeal lobe. As the germ band retracts, only cells in the lateral half of the mandibular segment and at the posterior border of the maxillary segment continue to express Dfd protein. At this stage some Dfd protein is observed on the dorsal surface in one or two rows at the anterior portion of the dorsal ridge.
The circumferential stripe of Dfd protein expression in the anterior blastoderm is posterior and adjacent to the stripe of ems protein expression.
Marker for
Subcellular Localization (GO Cellular Component)
CV term
References
inferred from direct assay
hide Expression Deduced from Reporters
Reporter: P{HZ2.7}
Stage
Tissue/Position (including subcellular localization)
Reference
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)


   Styles
   Scales

Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 23.225
Larval Midgut
 
 4
Larval Hindgut
 
 4.5
Larval Malpighian Tubules
 
 6.1
Larval Fat Body
 
 4.9
Larval Salivary Gland
 
 7.9
Larval Trachea
 
 2.975
Larval Carcass
 
 5.025
Adult Head
 
 169.1
Adult Eye
 
 6.375
Adult Brain
 
 27.2
Adult Thoracic-Abdominal Ganglion
 
 8.5
Adult Crop
 
 7.7
Adult Midgut
 
 4
Adult Hindgut
 
 7.5
Adult Malpighian Tubules
 
 5.6
Adult Fat Body
 
 13.3
Adult Salivary Gland
 
 20.7
Adult Heart
 
 3.925
Adult VirginFemale Spermatheca
 
 8.6
Adult InseminatedFemale Spermatheca
 
 8.1
Adult Ovary
 
 3.2
Adult Testis
 
 4.9
Adult Male Accessory Gland
 
 10
Adult Carcass
 
 16
Expression Level Scale
 None 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 23.225
Larval Midgut
 
 4
Larval Hindgut
 
 4.5
Larval Malpighian Tubules
 
 6.1
Larval Fat Body
 
 4.9
Larval Salivary Gland
 
 7.9
Larval Trachea
 
 2.975
Larval Carcass
 
 5.025
Adult Head
 
 169.1
Adult Eye
 
 6.375
Adult Brain
 
 27.2
Adult Thoracic-Abdominal Ganglion
 
 8.5
Adult Crop
 
 7.7
Adult Midgut
 
 4
Adult Hindgut
 
 7.5
Adult Malpighian Tubules
 
 5.6
Adult Fat Body
 
 13.3
Adult Salivary Gland
 
 20.7
Adult Heart
 
 3.925
Adult VirginFemale Spermatheca
 
 8.6
Adult InseminatedFemale Spermatheca
 
 8.1
Adult Ovary
 
 3.2
Adult Testis
 
 4.9
Adult Male Accessory Gland
 
 10
Adult Carcass
 
 16
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 23.225
Larval Midgut
 
 4
Larval Hindgut
 
 4.5
Larval Malpighian Tubules
 
 6.1
Larval Fat Body
 
 4.9
Larval Salivary Gland
 
 7.9
Larval Trachea
 
 2.975
Larval Carcass
 
 5.025
Adult Head
 
 169.1
Adult Eye
 
 6.375
Adult Brain
 
 27.2
Adult Thoracic-Abdominal Ganglion
 
 8.5
Adult Crop
 
 7.7
Adult Midgut
 
 4
Adult Hindgut
 
 7.5
Adult Malpighian Tubules
 
 5.6
Adult Fat Body
 
 13.3
Adult Salivary Gland
 
 20.7
Adult Heart
 
 3.925
Adult VirginFemale Spermatheca
 
 8.6
Adult InseminatedFemale Spermatheca
 
 8.1
Adult Ovary
 
 3.2
Adult Testis
 
 4.9
Adult Male Accessory Gland
 
 10
Adult Carcass
 
 16
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 23.225
Larval Midgut
 
 4
Larval Hindgut
 
 4.5
Larval Malpighian Tubules
 
 6.1
Larval Fat Body
 
 4.9
Larval Salivary Gland
 
 7.9
Larval Trachea
 
 2.975
Larval Carcass
 
 5.025
Adult Head
 
 169.1
Adult Eye
 
 6.375
Adult Brain
 
 27.2
Adult Thoracic-Abdominal Ganglion
 
 8.5
Adult Crop
 
 7.7
Adult Midgut
 
 4
Adult Hindgut
 
 7.5
Adult Malpighian Tubules
 
 5.6
Adult Fat Body
 
 13.3
Adult Salivary Gland
 
 20.7
Adult Heart
 
 3.925
Adult VirginFemale Spermatheca
 
 8.6
Adult InseminatedFemale Spermatheca
 
 8.1
Adult Ovary
 
 3.2
Adult Testis
 
 4.9
Adult Male Accessory Gland
 
 10
Adult Carcass
 
 16
Expression Level Scale
 Very high 
log, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 23.225
Larval Midgut
 
 4
Larval Hindgut
 
 4.5
Larval Malpighian Tubules
 
 6.1
Larval Fat Body
 
 4.9
Larval Salivary Gland
 
 7.9
Larval Trachea
 
 2.975
Larval Carcass
 
 5.025
Adult Head
 
 169.1
Adult Eye
 
 6.375
Adult Brain
 
 27.2
Adult Thoracic-Abdominal Ganglion
 
 8.5
Adult Crop
 
 7.7
Adult Midgut
 
 4
Adult Hindgut
 
 7.5
Adult Malpighian Tubules
 
 5.6
Adult Fat Body
 
 13.3
Adult Salivary Gland
 
 20.7
Adult Heart
 
 3.925
Adult VirginFemale Spermatheca
 
 8.6
Adult InseminatedFemale Spermatheca
 
 8.1
Adult Ovary
 
 3.2
Adult Testis
 
 4.9
Adult Male Accessory Gland
 
 10
Adult Carcass
 
 16
Expression Level Scale
 None 
 Low 
 Moderate 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 23.225
Larval Midgut
 
 4
Larval Hindgut
 
 4.5
Larval Malpighian Tubules
 
 6.1
Larval Fat Body
 
 4.9
Larval Salivary Gland
 
 7.9
Larval Trachea
 
 2.975
Larval Carcass
 
 5.025
Adult Head
 
 169.1
Adult Eye
 
 6.375
Adult Brain
 
 27.2
Adult Thoracic-Abdominal Ganglion
 
 8.5
Adult Crop
 
 7.7
Adult Midgut
 
 4
Adult Hindgut
 
 7.5
Adult Malpighian Tubules
 
 5.6
Adult Fat Body
 
 13.3
Adult Salivary Gland
 
 20.7
Adult Heart
 
 3.925
Adult VirginFemale Spermatheca
 
 8.6
Adult InseminatedFemale Spermatheca
 
 8.1
Adult Ovary
 
 3.2
Adult Testis
 
 4.9
Adult Male Accessory Gland
 
 10
Adult Carcass
 
 16
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 23.225
Larval Midgut
 
 4
Larval Hindgut
 
 4.5
Larval Malpighian Tubules
 
 6.1
Larval Fat Body
 
 4.9
Larval Salivary Gland
 
 7.9
Larval Trachea
 
 2.975
Larval Carcass
 
 5.025
Adult Head
 
 169.1
Adult Eye
 
 6.375
Adult Brain
 
 27.2
Adult Thoracic-Abdominal Ganglion
 
 8.5
Adult Crop
 
 7.7
Adult Midgut
 
 4
Adult Hindgut
 
 7.5
Adult Malpighian Tubules
 
 5.6
Adult Fat Body
 
 13.3
Adult Salivary Gland
 
 20.7
Adult Heart
 
 3.925
Adult VirginFemale Spermatheca
 
 8.6
Adult InseminatedFemale Spermatheca
 
 8.1
Adult Ovary
 
 3.2
Adult Testis
 
 4.9
Adult Male Accessory Gland
 
 10
Adult Carcass
 
 16
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 23.225
Larval Midgut
 
 4
Larval Hindgut
 
 4.5
Larval Malpighian Tubules
 
 6.1
Larval Fat Body
 
 4.9
Larval Salivary Gland
 
 7.9
Larval Trachea
 
 2.975
Larval Carcass
 
 5.025
Adult Head
 
 169.1
Adult Eye
 
 6.375
Adult Brain
 
 27.2
Adult Thoracic-Abdominal Ganglion
 
 8.5
Adult Crop
 
 7.7
Adult Midgut
 
 4
Adult Hindgut
 
 7.5
Adult Malpighian Tubules
 
 5.6
Adult Fat Body
 
 13.3
Adult Salivary Gland
 
 20.7
Adult Heart
 
 3.925
Adult VirginFemale Spermatheca
 
 8.6
Adult InseminatedFemale Spermatheca
 
 8.1
Adult Ovary
 
 3.2
Adult Testis
 
 4.9
Adult Male Accessory Gland
 
 10
Adult Carcass
 
 16
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 169.1
 
NA 
Eye
 
 6.375
 
NA 
Brain
 
 27.2
 
23.225 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 8.5
 
NA 
Crop
 
 7.7
 
Midgut
 
 4
 
4.5 
Hindgut
 
 7.5
 
6.1 
Malpighian Tubules
 
 5.6
 
4.9 
Fat Body
 
 no informative data
 
7.9 
Salivary Gland
 
 no informative data
 
NA 
Heart
 
 3.925
 
2.975 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 8.6
 
NA 
InseminatedFemale Spermatheca
 
 8.1
 
NA 
Ovary
 
 3.2
 
NA 
Testis
 
 4.9
 
NA 
Male Accessory Gland
 
 no informative data
 
5.025 
Carcass
 
 no informative data

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 1
central nervous system, larvae L3
 
 1
central nervous system, pupae P8
 
 1
head, virgin 1-day female
 
 9
head, virgin 4-day female
 
 10
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 10
head, mated 4-day female
 
 7
head, mated 20-day female
 
 7
head, mated 1-day male
 
 13
head, mated 4-day male
 
 12
head, mated 20-day male
 
 15
salivary gland, larvae L3 wandering
 
 0
salivary gland, white prepupae
 
 0
digestive system, larvae L3 wandering
 
 0
digestive system, 1-day adult
 
 0
digestive system, 4-day adult
 
 0
digestive system, 20-day adult
 
 0
fat body, larvae L3 wandering
 
 0
fat body, white prepupae
 
 0
fat body, pupae P8
 
 0
carcass, larvae L3 wandering
 
 2
carcass, 1-day adult
 
 0
carcass, 4-day adult
 
 0
carcass, 20-day adult
 
 0
ovary, virgin 4-day female
 
 0
ovary, mated 4-day female
 
 0
testis, mated 4-day male
 
 0
accessory gland, mated 4-day male
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 1
central nervous system, larvae L3
 
 1
central nervous system, pupae P8
 
 1
head, virgin 1-day female
 
 9
head, virgin 4-day female
 
 10
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 10
head, mated 4-day female
 
 7
head, mated 20-day female
 
 7
head, mated 1-day male
 
 13
head, mated 4-day male
 
 12
head, mated 20-day male
 
 15
salivary gland, larvae L3 wandering
 
 0
salivary gland, white prepupae
 
 0
digestive system, larvae L3 wandering
 
 0
digestive system, 1-day adult
 
 0
digestive system, 4-day adult
 
 0
digestive system, 20-day adult
 
 0
fat body, larvae L3 wandering
 
 0
fat body, white prepupae
 
 0
fat body, pupae P8
 
 0
carcass, larvae L3 wandering
 
 2
carcass, 1-day adult
 
 0
carcass, 4-day adult
 
 0
carcass, 20-day adult
 
 0
ovary, virgin 4-day female
 
 0
ovary, mated 4-day female
 
 0
testis, mated 4-day male
 
 0
accessory gland, mated 4-day male
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 1
central nervous system, larvae L3
 
 1
central nervous system, pupae P8
 
 1
head, virgin 1-day female
 
 9
head, virgin 4-day female
 
 10
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 10
head, mated 4-day female
 
 7
head, mated 20-day female
 
 7
head, mated 1-day male
 
 13
head, mated 4-day male
 
 12
head, mated 20-day male
 
 15
salivary gland, larvae L3 wandering
 
 0
salivary gland, white prepupae
 
 0
digestive system, larvae L3 wandering
 
 0
digestive system, 1-day adult
 
 0
digestive system, 4-day adult
 
 0
digestive system, 20-day adult
 
 0
fat body, larvae L3 wandering
 
 0
fat body, white prepupae
 
 0
fat body, pupae P8
 
 0
carcass, larvae L3 wandering
 
 2
carcass, 1-day adult
 
 0
carcass, 4-day adult
 
 0
carcass, 20-day adult
 
 0
ovary, virgin 4-day female
 
 0
ovary, mated 4-day female
 
 0
testis, mated 4-day male
 
 0
accessory gland, mated 4-day male
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 1
central nervous system, larvae L3
 
 1
central nervous system, pupae P8
 
 1
head, virgin 1-day female
 
 9
head, virgin 4-day female
 
 10
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 10
head, mated 4-day female
 
 7
head, mated 20-day female
 
 7
head, mated 1-day male
 
 13
head, mated 4-day male
 
 12
head, mated 20-day male
 
 15
salivary gland, larvae L3 wandering
 
 0
salivary gland, white prepupae
 
 0
digestive system, larvae L3 wandering
 
 0
digestive system, 1-day adult
 
 0
digestive system, 4-day adult
 
 0
digestive system, 20-day adult
 
 0
fat body, larvae L3 wandering
 
 0
fat body, white prepupae
 
 0
fat body, pupae P8
 
 0
carcass, larvae L3 wandering
 
 2
carcass, 1-day adult
 
 0
carcass, 4-day adult
 
 0
carcass, 20-day adult
 
 0
ovary, virgin 4-day female
 
 0
ovary, mated 4-day female
 
 0
testis, mated 4-day male
 
 0
accessory gland, mated 4-day male
 
 0
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 1
central nervous system, larvae L3
 
 1
central nervous system, pupae P8
 
 1
head, virgin 1-day female
 
 9
head, virgin 4-day female
 
 10
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 10
head, mated 4-day female
 
 7
head, mated 20-day female
 
 7
head, mated 1-day male
 
 13
head, mated 4-day male
 
 12
head, mated 20-day male
 
 15
salivary gland, larvae L3 wandering
 
 0
salivary gland, white prepupae
 
 0
digestive system, larvae L3 wandering
 
 0
digestive system, 1-day adult
 
 0
digestive system, 4-day adult
 
 0
digestive system, 20-day adult
 
 0
fat body, larvae L3 wandering
 
 0
fat body, white prepupae
 
 0
fat body, pupae P8
 
 0
carcass, larvae L3 wandering
 
 2
carcass, 1-day adult
 
 0
carcass, 4-day adult
 
 0
carcass, 20-day adult
 
 0
ovary, virgin 4-day female
 
 0
ovary, mated 4-day female
 
 0
testis, mated 4-day male
 
 0
accessory gland, mated 4-day male
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
log, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 1
central nervous system, larvae L3
 
 1
central nervous system, pupae P8
 
 1
head, virgin 1-day female
 
 9
head, virgin 4-day female
 
 10
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 10
head, mated 4-day female
 
 7
head, mated 20-day female
 
 7
head, mated 1-day male
 
 13
head, mated 4-day male
 
 12
head, mated 20-day male
 
 15
salivary gland, larvae L3 wandering
 
 0
salivary gland, white prepupae
 
 0
digestive system, larvae L3 wandering
 
 0
digestive system, 1-day adult
 
 0
digestive system, 4-day adult
 
 0
digestive system, 20-day adult
 
 0
fat body, larvae L3 wandering
 
 0
fat body, white prepupae
 
 0
fat body, pupae P8
 
 0
carcass, larvae L3 wandering
 
 2
carcass, 1-day adult
 
 0
carcass, 4-day adult
 
 0
carcass, 20-day adult
 
 0
ovary, virgin 4-day female
 
 0
ovary, mated 4-day female
 
 0
testis, mated 4-day male
 
 0
accessory gland, mated 4-day male
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 1
central nervous system, larvae L3
 
 1
central nervous system, pupae P8
 
 1
head, virgin 1-day female
 
 9
head, virgin 4-day female
 
 10
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 10
head, mated 4-day female
 
 7
head, mated 20-day female
 
 7
head, mated 1-day male
 
 13
head, mated 4-day male
 
 12
head, mated 20-day male
 
 15
salivary gland, larvae L3 wandering
 
 0
salivary gland, white prepupae
 
 0
digestive system, larvae L3 wandering
 
 0
digestive system, 1-day adult
 
 0
digestive system, 4-day adult
 
 0
digestive system, 20-day adult
 
 0
fat body, larvae L3 wandering
 
 0
fat body, white prepupae
 
 0
fat body, pupae P8
 
 0
carcass, larvae L3 wandering
 
 2
carcass, 1-day adult
 
 0
carcass, 4-day adult
 
 0
carcass, 20-day adult
 
 0
ovary, virgin 4-day female
 
 0
ovary, mated 4-day female
 
 0
testis, mated 4-day male
 
 0
accessory gland, mated 4-day male
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 1
central nervous system, larvae L3
 
 1
central nervous system, pupae P8
 
 1
head, virgin 1-day female
 
 9
head, virgin 4-day female
 
 10
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 10
head, mated 4-day female
 
 7
head, mated 20-day female
 
 7
head, mated 1-day male
 
 13
head, mated 4-day male
 
 12
head, mated 20-day male
 
 15
salivary gland, larvae L3 wandering
 
 0
salivary gland, white prepupae
 
 0
digestive system, larvae L3 wandering
 
 0
digestive system, 1-day adult
 
 0
digestive system, 4-day adult
 
 0
digestive system, 20-day adult
 
 0
fat body, larvae L3 wandering
 
 0
fat body, white prepupae
 
 0
fat body, pupae P8
 
 0
carcass, larvae L3 wandering
 
 2
carcass, 1-day adult
 
 0
carcass, 4-day adult
 
 0
carcass, 20-day adult
 
 0
ovary, virgin 4-day female
 
 0
ovary, mated 4-day female
 
 0
testis, mated 4-day male
 
 0
accessory gland, mated 4-day male
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 
central nervous system, larvae L3
 
 
central nervous system, pupae P8
 
 
head, virgin 1-day female
 
 
head, virgin 4-day female
 
 
head, virgin 20-day female
 
 
head, mated 1-day female
 
 
head, mated 4-day female
 
 
head, mated 20-day female
 
 
head, mated 1-day male
 
 
head, mated 4-day male
 
 
head, mated 20-day male
 
 
salivary gland, larvae L3 wandering
 
 
salivary gland, white prepupae
 
 
digestive system, larvae L3 wandering
 
 
digestive system, 1-day adult
 
 
digestive system, 4-day adult
 
 
digestive system, 20-day adult
 
 
fat body, larvae L3 wandering
 
 
fat body, white prepupae
 
 
fat body, pupae P8
 
 
carcass, larvae L3 wandering
 
 
carcass, 1-day adult
 
 
carcass, 4-day adult
 
 
carcass, 20-day adult
 
 
ovary, virgin 4-day female
 
 
ovary, mated 4-day female
 
 
testis, mated 4-day male
 
 
accessory gland, mated 4-day male
 
 

hide modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)


   Styles
   Scales

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed within 00-18 hour embryonic stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 0
embryo 02-04hr
 
 7
embryo 04-06hr
 
 9
embryo 06-08hr
 
 9
embryo 08-10hr
 
 9
embryo 10-12hr
 
 7
embryo 12-14hr
 
 7
embryo 14-16hr
 
 6
embryo 16-18hr
 
 5
embryo 18-20hr
 
 4
embryo 20-22hr
 
 2
embryo 22-24hr
 
 3
larva L1
 
 3
larva L2
 
 1
larva L3 12hr old
 
 1
larva L3 puffstage 1-2
 
 0
larva L3 puffstage 3-6
 
 1
larva L3 puffstage 7-9
 
 1
white prepupae new
 
 1
white prepupae 12hr
 
 1
white prepupae 24hr
 
 1
pupae 2d postWPP
 
 1
pupae 3d postWPP
 
 0
pupae 4d postWPP
 
 1
adult male 01day
 
 1
adult male 05day
 
 1
adult male 30day
 
 1
adult female 01day
 
 1
adult female 05day
 
 0
adult female 30day
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 0
embryo 02-04hr
 
 7
embryo 04-06hr
 
 9
embryo 06-08hr
 
 9
embryo 08-10hr
 
 9
embryo 10-12hr
 
 7
embryo 12-14hr
 
 7
embryo 14-16hr
 
 6
embryo 16-18hr
 
 5
embryo 18-20hr
 
 4
embryo 20-22hr
 
 2
embryo 22-24hr
 
 3
larva L1
 
 3
larva L2
 
 1
larva L3 12hr old
 
 1
larva L3 puffstage 1-2
 
 0
larva L3 puffstage 3-6
 
 1
larva L3 puffstage 7-9
 
 1
white prepupae new
 
 1
white prepupae 12hr
 
 1
white prepupae 24hr
 
 1
pupae 2d postWPP
 
 1
pupae 3d postWPP
 
 0
pupae 4d postWPP
 
 1
adult male 01day
 
 1
adult male 05day
 
 1
adult male 30day
 
 1
adult female 01day
 
 1
adult female 05day
 
 0
adult female 30day
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 0
embryo 02-04hr
 
 7
embryo 04-06hr
 
 9
embryo 06-08hr
 
 9
embryo 08-10hr
 
 9
embryo 10-12hr
 
 7
embryo 12-14hr
 
 7
embryo 14-16hr
 
 6
embryo 16-18hr
 
 5
embryo 18-20hr
 
 4
embryo 20-22hr
 
 2
embryo 22-24hr
 
 3
larva L1
 
 3
larva L2
 
 1
larva L3 12hr old
 
 1
larva L3 puffstage 1-2
 
 0
larva L3 puffstage 3-6
 
 1
larva L3 puffstage 7-9
 
 1
white prepupae new
 
 1
white prepupae 12hr
 
 1
white prepupae 24hr
 
 1
pupae 2d postWPP
 
 1
pupae 3d postWPP
 
 0
pupae 4d postWPP
 
 1
adult male 01day
 
 1
adult male 05day
 
 1
adult male 30day
 
 1
adult female 01day
 
 1
adult female 05day
 
 0
adult female 30day
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 0
embryo 02-04hr
 
 7
embryo 04-06hr
 
 9
embryo 06-08hr
 
 9
embryo 08-10hr
 
 9
embryo 10-12hr
 
 7
embryo 12-14hr
 
 7
embryo 14-16hr
 
 6
embryo 16-18hr
 
 5
embryo 18-20hr
 
 4
embryo 20-22hr
 
 2
embryo 22-24hr
 
 3
larva L1
 
 3
larva L2
 
 1
larva L3 12hr old
 
 1
larva L3 puffstage 1-2
 
 0
larva L3 puffstage 3-6
 
 1
larva L3 puffstage 7-9
 
 1
white prepupae new
 
 1
white prepupae 12hr
 
 1
white prepupae 24hr
 
 1
pupae 2d postWPP
 
 1
pupae 3d postWPP
 
 0
pupae 4d postWPP
 
 1
adult male 01day
 
 1
adult male 05day
 
 1
adult male 30day
 
 1
adult female 01day
 
 1
adult female 05day
 
 0
adult female 30day
 
 0
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 0
embryo 02-04hr
 
 7
embryo 04-06hr
 
 9
embryo 06-08hr
 
 9
embryo 08-10hr
 
 9
embryo 10-12hr
 
 7
embryo 12-14hr
 
 7
embryo 14-16hr
 
 6
embryo 16-18hr
 
 5
embryo 18-20hr
 
 4
embryo 20-22hr
 
 2
embryo 22-24hr
 
 3
larva L1
 
 3
larva L2
 
 1
larva L3 12hr old
 
 1
larva L3 puffstage 1-2
 
 0
larva L3 puffstage 3-6
 
 1
larva L3 puffstage 7-9
 
 1
white prepupae new
 
 1
white prepupae 12hr
 
 1
white prepupae 24hr
 
 1
pupae 2d postWPP
 
 1
pupae 3d postWPP
 
 0
pupae 4d postWPP
 
 1
adult male 01day
 
 1
adult male 05day
 
 1
adult male 30day
 
 1
adult female 01day
 
 1
adult female 05day
 
 0
adult female 30day
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 0
embryo 02-04hr
 
 7
embryo 04-06hr
 
 9
embryo 06-08hr
 
 9
embryo 08-10hr
 
 9
embryo 10-12hr
 
 7
embryo 12-14hr
 
 7
embryo 14-16hr
 
 6
embryo 16-18hr
 
 5
embryo 18-20hr
 
 4
embryo 20-22hr
 
 2
embryo 22-24hr
 
 3
larva L1
 
 3
larva L2
 
 1
larva L3 12hr old
 
 1
larva L3 puffstage 1-2
 
 0
larva L3 puffstage 3-6
 
 1
larva L3 puffstage 7-9
 
 1
white prepupae new
 
 1
white prepupae 12hr
 
 1
white prepupae 24hr
 
 1
pupae 2d postWPP
 
 1
pupae 3d postWPP
 
 0
pupae 4d postWPP
 
 1
adult male 01day
 
 1
adult male 05day
 
 1
adult male 30day
 
 1
adult female 01day
 
 1
adult female 05day
 
 0
adult female 30day
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 0
embryo 02-04hr
 
 7
embryo 04-06hr
 
 9
embryo 06-08hr
 
 9
embryo 08-10hr
 
 9
embryo 10-12hr
 
 7
embryo 12-14hr
 
 7
embryo 14-16hr
 
 6
embryo 16-18hr
 
 5
embryo 18-20hr
 
 4
embryo 20-22hr
 
 2
embryo 22-24hr
 
 3
larva L1
 
 3
larva L2
 
 1
larva L3 12hr old
 
 1
larva L3 puffstage 1-2
 
 0
larva L3 puffstage 3-6
 
 1
larva L3 puffstage 7-9
 
 1
white prepupae new
 
 1
white prepupae 12hr
 
 1
white prepupae 24hr
 
 1
pupae 2d postWPP
 
 1
pupae 3d postWPP
 
 0
pupae 4d postWPP
 
 1
adult male 01day
 
 1
adult male 05day
 
 1
adult male 30day
 
 1
adult female 01day
 
 1
adult female 05day
 
 0
adult female 30day
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 0
embryo 02-04hr
 
 7
embryo 04-06hr
 
 9
embryo 06-08hr
 
 9
embryo 08-10hr
 
 9
embryo 10-12hr
 
 7
embryo 12-14hr
 
 7
embryo 14-16hr
 
 6
embryo 16-18hr
 
 5
embryo 18-20hr
 
 4
embryo 20-22hr
 
 2
embryo 22-24hr
 
 3
larva L1
 
 3
larva L2
 
 1
larva L3 12hr old
 
 1
larva L3 puffstage 1-2
 
 0
larva L3 puffstage 3-6
 
 1
larva L3 puffstage 7-9
 
 1
white prepupae new
 
 1
white prepupae 12hr
 
 1
white prepupae 24hr
 
 1
pupae 2d postWPP
 
 1
pupae 3d postWPP
 
 0
pupae 4d postWPP
 
 1
adult male 01day
 
 1
adult male 05day
 
 1
adult male 30day
 
 1
adult female 01day
 
 1
adult female 05day
 
 0
adult female 30day
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

modENCODE Temporal Expression Data (Graveley et al., 2011)
hide modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 0
Schneider line 2 Sg4
 
 0
embryonic 1182-4H
 
 0
embryonic GM2
 
 0
embryonic Kc167
 
 5
embryonic S1
 
 0
embryonic S3
 
 0
leg disc CME L1
 
 0
wing disc CME-W2
 
 0
wing disc ML-DmD8
 
 0
wing disc ML-DmD9
 
 1
wing disc ML-DmD16-c3
 
 0
wing disc ML-DmD21
 
 0
wing disc ML-DmD32
 
 0
haltere disc ML-DmD17-c3
 
 0
eye-antennal disc ML-DmD11
 
 0
antennal disc ML-DmD20-c5
 
 0
mixed discs ML-DmD4-c1
 
 0
CNS ML-DmBG1-c1
 
 0
CNS ML-DmBG2-c2
 
 0
tumorous blood cells mbn2
 
 0
ovary fGS/OSS
 
 0
ovary OSC
 
 0
ovary OSS
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 0
Schneider line 2 Sg4
 
 0
embryonic 1182-4H
 
 0
embryonic GM2
 
 0
embryonic Kc167
 
 5
embryonic S1
 
 0
embryonic S3
 
 0
leg disc CME L1
 
 0
wing disc CME-W2
 
 0
wing disc ML-DmD8
 
 0
wing disc ML-DmD9
 
 1
wing disc ML-DmD16-c3
 
 0
wing disc ML-DmD21
 
 0
wing disc ML-DmD32
 
 0
haltere disc ML-DmD17-c3
 
 0
eye-antennal disc ML-DmD11
 
 0
antennal disc ML-DmD20-c5
 
 0
mixed discs ML-DmD4-c1
 
 0
CNS ML-DmBG1-c1
 
 0
CNS ML-DmBG2-c2
 
 0
tumorous blood cells mbn2
 
 0
ovary fGS/OSS
 
 0
ovary OSC
 
 0
ovary OSS
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 0
Schneider line 2 Sg4
 
 0
embryonic 1182-4H
 
 0
embryonic GM2
 
 0
embryonic Kc167
 
 5
embryonic S1
 
 0
embryonic S3
 
 0
leg disc CME L1
 
 0
wing disc CME-W2
 
 0
wing disc ML-DmD8
 
 0
wing disc ML-DmD9
 
 1
wing disc ML-DmD16-c3
 
 0
wing disc ML-DmD21
 
 0
wing disc ML-DmD32
 
 0
haltere disc ML-DmD17-c3
 
 0
eye-antennal disc ML-DmD11
 
 0
antennal disc ML-DmD20-c5
 
 0
mixed discs ML-DmD4-c1
 
 0
CNS ML-DmBG1-c1
 
 0
CNS ML-DmBG2-c2
 
 0
tumorous blood cells mbn2
 
 0
ovary fGS/OSS
 
 0
ovary OSC
 
 0
ovary OSS
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 0
Schneider line 2 Sg4
 
 0
embryonic 1182-4H
 
 0
embryonic GM2
 
 0
embryonic Kc167
 
 5
embryonic S1
 
 0
embryonic S3
 
 0
leg disc CME L1
 
 0
wing disc CME-W2
 
 0
wing disc ML-DmD8
 
 0
wing disc ML-DmD9
 
 1
wing disc ML-DmD16-c3
 
 0
wing disc ML-DmD21
 
 0
wing disc ML-DmD32
 
 0
haltere disc ML-DmD17-c3
 
 0
eye-antennal disc ML-DmD11
 
 0
antennal disc ML-DmD20-c5
 
 0
mixed discs ML-DmD4-c1
 
 0
CNS ML-DmBG1-c1
 
 0
CNS ML-DmBG2-c2
 
 0
tumorous blood cells mbn2
 
 0
ovary fGS/OSS
 
 0
ovary OSC
 
 0
ovary OSS
 
 0
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 0
Schneider line 2 Sg4
 
 0
embryonic 1182-4H
 
 0
embryonic GM2
 
 0
embryonic Kc167
 
 5
embryonic S1
 
 0
embryonic S3
 
 0
leg disc CME L1
 
 0
wing disc CME-W2
 
 0
wing disc ML-DmD8
 
 0
wing disc ML-DmD9
 
 1
wing disc ML-DmD16-c3
 
 0
wing disc ML-DmD21
 
 0
wing disc ML-DmD32
 
 0
haltere disc ML-DmD17-c3
 
 0
eye-antennal disc ML-DmD11
 
 0
antennal disc ML-DmD20-c5
 
 0
mixed discs ML-DmD4-c1
 
 0
CNS ML-DmBG1-c1
 
 0
CNS ML-DmBG2-c2
 
 0
tumorous blood cells mbn2
 
 0
ovary fGS/OSS
 
 0
ovary OSC
 
 0
ovary OSS
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
log, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 0
Schneider line 2 Sg4
 
 0
embryonic 1182-4H
 
 0
embryonic GM2
 
 0
embryonic Kc167
 
 5
embryonic S1
 
 0
embryonic S3
 
 0
leg disc CME L1
 
 0
wing disc CME-W2
 
 0
wing disc ML-DmD8
 
 0
wing disc ML-DmD9
 
 1
wing disc ML-DmD16-c3
 
 0
wing disc ML-DmD21
 
 0
wing disc ML-DmD32
 
 0
haltere disc ML-DmD17-c3
 
 0
eye-antennal disc ML-DmD11
 
 0
antennal disc ML-DmD20-c5
 
 0
mixed discs ML-DmD4-c1
 
 0
CNS ML-DmBG1-c1
 
 0
CNS ML-DmBG2-c2
 
 0
tumorous blood cells mbn2
 
 0
ovary fGS/OSS
 
 0
ovary OSC
 
 0
ovary OSS
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 0
Schneider line 2 Sg4
 
 0
embryonic 1182-4H
 
 0
embryonic GM2
 
 0
embryonic Kc167
 
 5
embryonic S1
 
 0
embryonic S3
 
 0
leg disc CME L1
 
 0
wing disc CME-W2
 
 0
wing disc ML-DmD8
 
 0
wing disc ML-DmD9
 
 1
wing disc ML-DmD16-c3
 
 0
wing disc ML-DmD21
 
 0
wing disc ML-DmD32
 
 0
haltere disc ML-DmD17-c3
 
 0
eye-antennal disc ML-DmD11
 
 0
antennal disc ML-DmD20-c5
 
 0
mixed discs ML-DmD4-c1
 
 0
CNS ML-DmBG1-c1
 
 0
CNS ML-DmBG2-c2
 
 0
tumorous blood cells mbn2
 
 0
ovary fGS/OSS
 
 0
ovary OSC
 
 0
ovary OSS
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 0
Schneider line 2 Sg4
 
 0
embryonic 1182-4H
 
 0
embryonic GM2
 
 0
embryonic Kc167
 
 5
embryonic S1
 
 0
embryonic S3
 
 0
leg disc CME L1
 
 0
wing disc CME-W2
 
 0
wing disc ML-DmD8
 
 0
wing disc ML-DmD9
 
 1
wing disc ML-DmD16-c3
 
 0
wing disc ML-DmD21
 
 0
wing disc ML-DmD32
 
 0
haltere disc ML-DmD17-c3
 
 0
eye-antennal disc ML-DmD11
 
 0
antennal disc ML-DmD20-c5
 
 0
mixed discs ML-DmD4-c1
 
 0
CNS ML-DmBG1-c1
 
 0
CNS ML-DmBG2-c2
 
 0
tumorous blood cells mbn2
 
 0
ovary fGS/OSS
 
 0
ovary OSC
 
 0
ovary OSS
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Cell Line   Expression Level
Schneider line 2 S2R+
 
 
Schneider line 2 Sg4
 
 
embryonic 1182-4H
 
 
embryonic GM2
 
 
embryonic Kc167
 
 
embryonic S1
 
 
embryonic S3
 
 
leg disc CME L1
 
 
wing disc CME-W2
 
 
wing disc ML-DmD8
 
 
wing disc ML-DmD9
 
 
wing disc ML-DmD16-c3
 
 
wing disc ML-DmD21
 
 
wing disc ML-DmD32
 
 
haltere disc ML-DmD17-c3
 
 
eye-antennal disc ML-DmD11
 
 
antennal disc ML-DmD20-c5
 
 
mixed discs ML-DmD4-c1
 
 
CNS ML-DmBG1-c1
 
 
CNS ML-DmBG2-c2
 
 
tumorous blood cells mbn2
 
 
ovary fGS/OSS
 
 
ovary OSC
 
 
ovary OSS
 
 

hide modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 1
cold shock, 4-day adult
 
 1
heat shock, 4-day adult
 
 1
Cadmium 50 mM 6 hrs, larvae L3
 
 0
Cadmium 50 mM 12 hrs, larvae L3
 
 1
Cadmium 50 mM 48 hrs, 4-day adult
 
 0
Cadmium 100 mM 48 hrs, 4-day adult
 
 1
Copper 0.5 mM 12 hrs, larvae L3
 
 0
Copper 15 mM 48 hrs, 4-day adult
 
 1
Zinc 5 mM 12 hrs, larvae L3
 
 1
Zinc 4.5 mM 48 hrs, 4-day adult
 
 1
Ethanol 2.5% 3 hrs, larvae L3
 
 1
Ethanol 5% 3 hrs, larvae L3
 
 0
Ethanol 10% 3 hrs, larvae L3
 
 0
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 1
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 1
Paraquat 5 mM 48 hrs, 4-day adult
 
 1
Paraquat 10 mM 48 hrs, 4-day adult
 
 1
Rotenone 2 μg 12 hrs, larvae L3
 
 0
Rotenone 8 μg 12 hrs, larvae L3
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 1
cold shock, 4-day adult
 
 1
heat shock, 4-day adult
 
 1
Cadmium 50 mM 6 hrs, larvae L3
 
 0
Cadmium 50 mM 12 hrs, larvae L3
 
 1
Cadmium 50 mM 48 hrs, 4-day adult
 
 0
Cadmium 100 mM 48 hrs, 4-day adult
 
 1
Copper 0.5 mM 12 hrs, larvae L3
 
 0
Copper 15 mM 48 hrs, 4-day adult
 
 1
Zinc 5 mM 12 hrs, larvae L3
 
 1
Zinc 4.5 mM 48 hrs, 4-day adult
 
 1
Ethanol 2.5% 3 hrs, larvae L3
 
 1
Ethanol 5% 3 hrs, larvae L3
 
 0
Ethanol 10% 3 hrs, larvae L3
 
 0
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 1
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 1
Paraquat 5 mM 48 hrs, 4-day adult
 
 1
Paraquat 10 mM 48 hrs, 4-day adult
 
 1
Rotenone 2 μg 12 hrs, larvae L3
 
 0
Rotenone 8 μg 12 hrs, larvae L3
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 1
cold shock, 4-day adult
 
 1
heat shock, 4-day adult
 
 1
Cadmium 50 mM 6 hrs, larvae L3
 
 0
Cadmium 50 mM 12 hrs, larvae L3
 
 1
Cadmium 50 mM 48 hrs, 4-day adult
 
 0
Cadmium 100 mM 48 hrs, 4-day adult
 
 1
Copper 0.5 mM 12 hrs, larvae L3
 
 0
Copper 15 mM 48 hrs, 4-day adult
 
 1
Zinc 5 mM 12 hrs, larvae L3
 
 1
Zinc 4.5 mM 48 hrs, 4-day adult
 
 1
Ethanol 2.5% 3 hrs, larvae L3
 
 1
Ethanol 5% 3 hrs, larvae L3
 
 0
Ethanol 10% 3 hrs, larvae L3
 
 0
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 1
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 1
Paraquat 5 mM 48 hrs, 4-day adult
 
 1
Paraquat 10 mM 48 hrs, 4-day adult
 
 1
Rotenone 2 μg 12 hrs, larvae L3
 
 0
Rotenone 8 μg 12 hrs, larvae L3
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 1
cold shock, 4-day adult
 
 1
heat shock, 4-day adult
 
 1
Cadmium 50 mM 6 hrs, larvae L3
 
 0
Cadmium 50 mM 12 hrs, larvae L3
 
 1
Cadmium 50 mM 48 hrs, 4-day adult
 
 0
Cadmium 100 mM 48 hrs, 4-day adult
 
 1
Copper 0.5 mM 12 hrs, larvae L3
 
 0
Copper 15 mM 48 hrs, 4-day adult
 
 1
Zinc 5 mM 12 hrs, larvae L3
 
 1
Zinc 4.5 mM 48 hrs, 4-day adult
 
 1
Ethanol 2.5% 3 hrs, larvae L3
 
 1
Ethanol 5% 3 hrs, larvae L3
 
 0
Ethanol 10% 3 hrs, larvae L3
 
 0
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 1
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 1
Paraquat 5 mM 48 hrs, 4-day adult
 
 1
Paraquat 10 mM 48 hrs, 4-day adult
 
 1
Rotenone 2 μg 12 hrs, larvae L3
 
 0
Rotenone 8 μg 12 hrs, larvae L3
 
 0
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 1
cold shock, 4-day adult
 
 1
heat shock, 4-day adult
 
 1
Cadmium 50 mM 6 hrs, larvae L3
 
 0
Cadmium 50 mM 12 hrs, larvae L3
 
 1
Cadmium 50 mM 48 hrs, 4-day adult
 
 0
Cadmium 100 mM 48 hrs, 4-day adult
 
 1
Copper 0.5 mM 12 hrs, larvae L3
 
 0
Copper 15 mM 48 hrs, 4-day adult
 
 1
Zinc 5 mM 12 hrs, larvae L3
 
 1
Zinc 4.5 mM 48 hrs, 4-day adult
 
 1
Ethanol 2.5% 3 hrs, larvae L3
 
 1
Ethanol 5% 3 hrs, larvae L3
 
 0
Ethanol 10% 3 hrs, larvae L3
 
 0
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 1
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 1
Paraquat 5 mM 48 hrs, 4-day adult
 
 1
Paraquat 10 mM 48 hrs, 4-day adult
 
 1
Rotenone 2 μg 12 hrs, larvae L3
 
 0
Rotenone 8 μg 12 hrs, larvae L3
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
log, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 1
cold shock, 4-day adult
 
 1
heat shock, 4-day adult
 
 1
Cadmium 50 mM 6 hrs, larvae L3
 
 0
Cadmium 50 mM 12 hrs, larvae L3
 
 1
Cadmium 50 mM 48 hrs, 4-day adult
 
 0
Cadmium 100 mM 48 hrs, 4-day adult
 
 1
Copper 0.5 mM 12 hrs, larvae L3
 
 0
Copper 15 mM 48 hrs, 4-day adult
 
 1
Zinc 5 mM 12 hrs, larvae L3
 
 1
Zinc 4.5 mM 48 hrs, 4-day adult
 
 1
Ethanol 2.5% 3 hrs, larvae L3
 
 1
Ethanol 5% 3 hrs, larvae L3
 
 0
Ethanol 10% 3 hrs, larvae L3
 
 0
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 1
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 1
Paraquat 5 mM 48 hrs, 4-day adult
 
 1
Paraquat 10 mM 48 hrs, 4-day adult
 
 1
Rotenone 2 μg 12 hrs, larvae L3
 
 0
Rotenone 8 μg 12 hrs, larvae L3
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 1
cold shock, 4-day adult
 
 1
heat shock, 4-day adult
 
 1
Cadmium 50 mM 6 hrs, larvae L3
 
 0
Cadmium 50 mM 12 hrs, larvae L3
 
 1
Cadmium 50 mM 48 hrs, 4-day adult
 
 0
Cadmium 100 mM 48 hrs, 4-day adult
 
 1
Copper 0.5 mM 12 hrs, larvae L3
 
 0
Copper 15 mM 48 hrs, 4-day adult
 
 1
Zinc 5 mM 12 hrs, larvae L3
 
 1
Zinc 4.5 mM 48 hrs, 4-day adult
 
 1
Ethanol 2.5% 3 hrs, larvae L3
 
 1
Ethanol 5% 3 hrs, larvae L3
 
 0
Ethanol 10% 3 hrs, larvae L3
 
 0
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 1
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 1
Paraquat 5 mM 48 hrs, 4-day adult
 
 1
Paraquat 10 mM 48 hrs, 4-day adult
 
 1
Rotenone 2 μg 12 hrs, larvae L3
 
 0
Rotenone 8 μg 12 hrs, larvae L3
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 1
cold shock, 4-day adult
 
 1
heat shock, 4-day adult
 
 1
Cadmium 50 mM 6 hrs, larvae L3
 
 0
Cadmium 50 mM 12 hrs, larvae L3
 
 1
Cadmium 50 mM 48 hrs, 4-day adult
 
 0
Cadmium 100 mM 48 hrs, 4-day adult
 
 1
Copper 0.5 mM 12 hrs, larvae L3
 
 0
Copper 15 mM 48 hrs, 4-day adult
 
 1
Zinc 5 mM 12 hrs, larvae L3
 
 1
Zinc 4.5 mM 48 hrs, 4-day adult
 
 1
Ethanol 2.5% 3 hrs, larvae L3
 
 1
Ethanol 5% 3 hrs, larvae L3
 
 0
Ethanol 10% 3 hrs, larvae L3
 
 0
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 1
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 1
Paraquat 5 mM 48 hrs, 4-day adult
 
 1
Paraquat 10 mM 48 hrs, 4-day adult
 
 1
Rotenone 2 μg 12 hrs, larvae L3
 
 0
Rotenone 8 μg 12 hrs, larvae L3
 
 0
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Treatment   Expression Level
extended cold, 4-day adult
 
 
cold shock, 4-day adult
 
 
heat shock, 4-day adult
 
 
Cadmium 50 mM 6 hrs, larvae L3
 
 
Cadmium 50 mM 12 hrs, larvae L3
 
 
Cadmium 50 mM 48 hrs, 4-day adult
 
 
Cadmium 100 mM 48 hrs, 4-day adult
 
 
Copper 0.5 mM 12 hrs, larvae L3
 
 
Copper 15 mM 48 hrs, 4-day adult
 
 
Zinc 5 mM 12 hrs, larvae L3
 
 
Zinc 4.5 mM 48 hrs, 4-day adult
 
 
Ethanol 2.5% 3 hrs, larvae L3
 
 
Ethanol 5% 3 hrs, larvae L3
 
 
Ethanol 10% 3 hrs, larvae L3
 
 
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 
Paraquat 5 mM 48 hrs, 4-day adult
 
 
Paraquat 10 mM 48 hrs, 4-day adult
 
 
Rotenone 2 μg 12 hrs, larvae L3
 
 
Rotenone 8 μg 12 hrs, larvae L3
 
 

hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
abdominal segment & embryonic/first instar larval cuticle, with Scer\GAL4prd.RG1
embryonic gastric caecum & parasegment 3, with Scer\GAL4how-24B
embryonic thoracic segment & embryonic/first instar larval cuticle, with Scer\GAL4prd.RG1
hide Classical Alleles ( 31 )
For All Classical Alleles Show

Allele of DfdClassMutagenStocksKnown lesion
Dfd1gain of function allele18 Yes
Dfdrv1amorphic allele - genetic evidence10 Yes
Dfd16loss of function allele, amorphic allele - genetic evidence, hypomorphic allele - genetic evidence2 Yes
Dfdrv32 --
Dfd12amorphic allele - genetic evidence, hypomorphic allele - genetic evidence1 Yes
Dfd10amorphic allele - genetic evidence, hypomorphic allele - genetic evidence0 --
Dfd11loss of function allele, hypomorphic allele - genetic evidence0 --
Dfd13hypomorphic allele - genetic evidence0 Yes
Dfd14hypomorphic allele - genetic evidence0 --
Dfd15hypomorphic allele - genetic evidence0 --
Dfd2hypomorphic allele - genetic evidence0 --
Dfd38k0 --
Dfd3heat sensitive loss of function allele0 Yes
Dfd4hypomorphic allele - genetic evidence0 --
Dfd580 --
Dfd5hypomorphic allele - genetic evidence0 --
Dfd6loss of function allele0 --
Dfd7hypomorphic allele - genetic evidence0 --
Dfd8hypomorphic allele - genetic evidence0 --
Dfd9hypomorphic allele - genetic evidence0 --
DfdA325
0 --
DfdAntp17
0 Yes
Dfdr24hypomorphic allele - genetic evidence
0 --
Dfdr2hypomorphic allele - genetic evidence0 --
Dfdr570 --
Dfdr600 --
Dfdr0 --
DfdrL
0 --
Dfdrv20 --
Dfdrv40 Yes
Dfdunspecified
0 --
hide Alleles Carried on Transgenic Constructs ( 13 )
For All Alleles Carried on Transgenic Constructs Show

Allele of DfdClassMutagenStocksKnown lesion
DfdGD14162 Yes
DfdGD161591 Yes
Dfdhs.PK1 Yes
DfdJF023151 Yes
DfdScer\UAS.cBa1 Yes
DfdT:Avic\GFP-EGFP1 Yes
DfdNIG.2189R0 Yes
DfdScer\UAS.cLa0 Yes
DfdScer\UAS.T:Hsim\VP160 Yes
DfdtCH322-75M210 Yes
DfdΔA.hs0 Yes
DfdΔC.hs0 Yes
DfdΔNA.hs0 Yes
hide Aneuploid Aberrations
Not duplicated in
Partially duplicated in
Disrupted in
Not disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
reporter construct
NameExpression Data
P{4xE3.3}No
P{4xEN}No
P{Dfd.exd-lacZ.2xED2}No
P{Dfd-exdEAE-lacZ}No
P{Dfd-exdNAE-lacZ}No
P{Dfd-lacZ.1xE5pal}No
P{Dfd-lacZ.1xE6L}No
P{Dfd-lacZ.1xE}No
P{Dfd-lacZ.1xF}No
P{Dfd-lacZ.2xD}No
P{Dfd-lacZ.4xE1}No
P{Dfd-lacZ.4xE2}No
P{Dfd-lacZ.4xE3}No
P{Dfd-lacZ.4xE4}No
P{Dfd-lacZ.4xE5.1}No
P{Dfd-lacZ.4xE5.2}No
P{Dfd-lacZ.4xE5.3}No
P{Dfd-lacZ.4xE5.4}No
P{Dfd-lacZ.4xE5}No
P{Dfd-lacZ.4xE6.1}No
P{Dfd-lacZ.4xE6.2}No
P{Dfd-lacZ.4xE6.3}No
P{Dfd-lacZ.4xE6.4}No
P{Dfd-lacZ.4xE6}No
P{Dfd-lacZ.4xE}No
P{Dfd-lacZ.4xES}No
P{Dfd-lacZ.8x24bp}No
P{Dfd-lacZ.A}No
P{Dfd-lacZ.ABC}No
P{Dfd-lacZ.AZ'}No
P{Dfd-lacZ.AZ}No
P{Dfd-lacZ.B}No
P{Dfd-lacZ.C}No
P{Dfd-lacZ.cBa}No
P{Dfd-lacZ.D}No
P{Dfd-lacZ.DZ}No
P{Dfd-lacZ.E1}No
P{Dfd-lacZ.E2}No
P{Dfd-lacZ.E3}No
P{Dfd-lacZ.E4}No
P{Dfd-lacZ.E5}No
P{Dfd-lacZ.E6}No
P{Dfd-lacZ.ED}No
P{Dfd-lacZ.EN}No
P{Dfd-lacZ.F1}No
P{Dfd-lacZ.F2}No
P{Dfd-lacZ.F3}No
P{Dfd-lacZ.F4}No
P{Dfd-lacZ.F5}No
P{Dfd-lacZ.F6}No
P{Dfd-lacZ.F7}No
P{Dfd-lacZ.F8}No
P{Dfd-lacZ.F9}No
P{Dfd-lacZ.F10}No
P{Dfd-lacZ.F11}No
P{Dfd-lacZ.F12}No
P{Dfd-lacZ.M3-4}No
P{Dfd-lacZ.M4}No
P{Dfd-lacZ.M5-2}No
P{Dfd-lacZ.M5-4}No
P{Dfd-lacZ.M6-3}No
P{Dfd-lacZ.M}No
P{Dfd-lacZ.moduleE}No
P{DZ3.7}No
P{DZ7.5}No
P{HA3.5}No
P{HA5.0}No
P{HA6.6}No
P{HZ0.6}No
P{HZ0.9}No
P{HZ1.5}No
P{HZ2.1}No
P{HZ2.6}No
P{HZ2.7}No
P{HZ2.7REV}No
P{HZ3.2}No
P{HZ3.8}No
P{HZ4.1}No
P{HZ7.0}No
P{lacZDfd.920-HZ}No
P{lacZDfd.Q2.7-HZ}No
P{lacZDfd.Q920-HZ}No
P{ModuleE3BS}No
P{ModuleE3CS}No
P{ModuleES}No
UAS construct
NameExpression Data
P{GD1416}NA
P{GD16159}NA
P{NIG.2189R}NA
P{TRiP.JF02315}NA
P{UAS-Dfd.B}NA
P{UAS-Dfd.L}NA
P{UAS-Dfd.M}NA
P{UAS-Dfd.T:VP16}NA
heat-shock construct
NameExpression Data
P{DfdΔA/Dfd}NA
P{DfdΔC/Dfd}NA
P{DfdΔNA/Dfd}NA
P{hsDfd}NA
characterization construct
NameExpression Data
P{Dfd::Ubx.hsS1}NA
P{Dfd::Ubx.hsS2}NA
P{Dfd::Ubx.hsS3}NA
P{Dfd::Ubx.hsS4}NA
P{Dfd::Ubx.hsS5}NA
P{Dfd::Ubx.hsS6}NA
P{Dfd/Abd-B}NA
P{Dfd/Ubx}NA
P{DfdΔA/Abd-B}NA
P{DfdΔAC/Abd-B}NA
P{DfdΔC/Abd-B}NA
P{DfdΔN/Abd-B}NA
P{DfdΔNA/Abd-B}NA
P{HS-Dfd::Abd.BHD}NA
P{hsDfd-Ubx}NA
P{ro[Dfd]}NA
P{ro[HTHDfd]}NA
PBac{CH322-75M21}NA
PBac{Dfd-EGFP.S}NA
Insertions
Type of insertions
Name
Expression data
miscellaneous insertions
hide Gene Ontology: Function, Process & Cellular Component ( 14 unique terms )
hide Terms Based on Experimental Evidence ( 12 terms )
Molecular Function
CV term
References
inferred from physical interaction with exd
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from genetic interaction with th
inferred from mutant phenotype
Cellular Component
CV term
References
inferred from direct assay
hide Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term
References
Biological Process
CV term
References
Cellular Component
CV term
References
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
Dfd allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
hide OrthoDB Orthologs (109) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
hideOrthologs in Drosophila Species (EOG6G4H9C)
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly 
 
 
Drosophila simulans
 
Y
 
Drosophila sechellia
 
Y
 
Drosophila erecta
 
Y
 
Drosophila yakuba
 
Y
 
Drosophila ananassae
 
Y
 
Drosophila pseudoobscura pseudoobscura
 
Y
 
Drosophila persimilis
 
Y
 
Drosophila virilis
 
Y
 
Drosophila mojavensis
 
Y
 
Drosophila grimshawi
 
Y
 
hideOrthologs in non-Drosophila Dipterans (EOG69ZXXW)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Aedes aegypti
Yellow fever mosquito 
 
Anopheles gambiae
Malaria mosquito 
 
Culex quinquefasciatus
Southern house mosquito 
 
hideOrthologs in non-Dipteran Insects (EOG60P33S)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Apis mellifera
Western honey bee 
Amel\GB51299
 
Nasonia vitripennis
Parasitic wasp 
Nvit\Nasvi2EG011087
 
Acromyrmex echinatior
Panamanian leafcutter ant 
Aech\AECH17732
 
Atta cephalotes
Leafcutter ant 
Acep\ACEP10438
 
Camponotus floridanus
Florida carpenter ant 
Cflo\CFLO14720
 
Harpegnathos saltator
Jerdons jumping ant 
Hsal\HSAL17436
 
Linepithema humile
Argentine ant 
Lhum\LH19812
 
Pogonomyrmex barbatus
Red harvester ant 
Pbar\PB20609
 
Solenopsis invicta
Red fire ant 
Sinv\SINV20666
 
Acyrthosiphon pisum
Pea aphid 
 
Bombyx mori
Silkmoth 
 
Pediculus humanus
Human body louse 
 
Tribolium castaneum
Red flour beetle 
 
hideOrthologs in non-Insect Arthropods (EOG647D96)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Daphnia pulex
Water flea 
 
Daphnia pulex
Water flea 
 
Ixodes scapularis
Deer tick 
 
hideOrthologs in non-Arthropod Metazoa (EOG6MWN28)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Caenorhabditis elegans
Nematode 
Y
Caenorhabditis elegans
Nematode 
Y
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Xenopus tropicalis
Western clawed frog 
Y
Xenopus tropicalis
Western clawed frog 
Y
Xenopus tropicalis
Western clawed frog 
Y
Xenopus tropicalis
Western clawed frog 
Y
Xenopus tropicalis
Western clawed frog 
Y
Xenopus tropicalis
Western clawed frog 
Y
Xenopus tropicalis
Western clawed frog 
Y
Xenopus tropicalis
Western clawed frog 
Y
Xenopus tropicalis
Western clawed frog 
Y
Xenopus tropicalis
Western clawed frog 
Y
Xenopus tropicalis
Western clawed frog 
Y
Xenopus tropicalis
Western clawed frog 
Y
Gallus gallus
Domestic chicken 
Y
Gallus gallus
Domestic chicken 
Y
Gallus gallus
Domestic chicken 
Y
Gallus gallus
Domestic chicken 
Y
Gallus gallus
Domestic chicken 
Y
Gallus gallus
Domestic chicken 
Y
Gallus gallus
Domestic chicken 
Y
Gallus gallus
Domestic chicken 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Mus musculus
House mouse 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Rattus norvegicus
Norway rat 
Y
Homo sapiens
Human 
Y
Homo sapiens
Human 
Y
Homo sapiens
Human 
Y
Homo sapiens
Human 
Y
Homo sapiens
Human 
Y
Homo sapiens
Human 
Y
Homo sapiens
Human 
Y
Homo sapiens
Human 
Y
Homo sapiens
Human 
Y
Homo sapiens
Human 
Y
Homo sapiens
Human 
Y
Homo sapiens
Human 
Y
Homo sapiens
Human 
Y
hide Human Orthologs (13)
Gene
OMIM
HGNC
hideAAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism
Gene
Drosophila simulans
Drosophila sechellia
Drosophila erecta
Drosophila yakuba
Drosophila ananassae
Drosophila pseudoobscura pseudoobscura
Drosophila persimilis
Drosophila willistoni
Drosophila virilis
Drosophila mojavensis
Drosophila grimshawi
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 40 )
Bloomington
Kyoto
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 5 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
polyclonal
hide Other Information
hide Discoverer
hide Etymology
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for identity of: Dfd CG2189
Source for database merge of
Additional comments
hide Other Comments
Dfd maintains the boundary between the maxillary and mandibular head lobes by activating localised apoptosis in the embryo.
Dfd protein can interact with simple DNA-binding sites in embryos in the absence of exd protein, but this binding is not sufficient for transcriptional activation of reporter genes.
Dfd is required for neuronal differentiation in the developing embryonic brain.
In vitro DNA-binding studies reveal pros enhances Dfd regulatory region binding to DNA by more than 10-fold. pros protein modulates the DNA binding activity of Dfd by pros-mediated conformational changes.
Effects of overexpression of ANTP-C genes on tarsal segmentation in ss mutants is studied.
Water activity differentially affects Dfd homeodomain and Ubx homeodomain DNA binding activity: formation of the Ubx HD-DNA complex is associated with significantly greater water release than that of the Dfd HD-DNA complex. No influence of pH in water release was detected for either homeodomain. Chimeric Ubx-Dfd homeodomains demonstrates the C terminal region of the Ubx HD is the primary determinant for the greater water release associated with DNA binding for the protein.
Module E, a 120bp fragment of the Dfd epidermal autoregulatory element, contains a 51bp region, called 5-6, that is required to generate a functional Dfd response element, Dfd RE. Deaf1 acts through Module E in embryos and may function on other Dfd REs also.
DNA binding properties of Ubx and Dfd homeodomains are differentially influenced by alterations in physical environment.
A phylogenetic analysis of the Antp-class of homeodomains in nematode, Drosophila, amphioxus, mouse and human indicates that the 13 cognate group genes of this family can be divided into two major groups. Genes that are phylogenetically close are also closely located on the chromosome, suggesting that the colinearity between gene expression and gene arrangement was generated by successive tandem gene duplications and that the gene arrangement has been maintained by some sort of selection.
Transcriptional activity of the N domain of Dfd can be modulated by the acidic and C-tail domains.
It has been previously reported that Scr embryos display partial transformation of the labial segment to a more anterior maxillary identity. This transformation seems unusual because the Dfd protein does not accumulate in the labial cells of an Scr mutant. It is proposed that the putative ectopic maxillary sense organ in Scr mutants may instead be the labial sensory organ which is now visible because of incomplete head involution.
Dfd is spliced by two alternative pathways in neural and epidermal tissue.
Analysis of Dfd-Ecol\lacZ constructs indicates that the large intron of Dfd contains an enhancer that directs expression in the central nervous system. This 'Neural autoregulatory enhancer' (NAE) requires Dfd protein function for its full activity.
The 1.28 gene is directly activated by Dfd in the maxillary segment but not in the mandibular segment. Four Dfd-product binding sites have been identified within a 664bp fragment of the 1.28 regulatory region, in addition to a Dfd epidermal autoactivation element (DEAE).
In vitro DNA binding studies indicate that Dfd product affinity for the 120bp Dfd epidermal element is markedly enhanced when exd protein is added to the binding reaction.
ImpE1 and Dfd have been examined for their positions relative to the Broad complex genes in the hormone-regulated pathway of CNS metamorphosis. Dfd mutants manifest a defect in subesophageal ganglion metamorphosis, but expression of Dfd in the CNS is indifferent to 20HE levels.
Systematic characterisation of DNA sequence recognition properties reveals that Antp, Ubx and Dfd protein homeodomain regions binds preferentially to a core sequence which differs from the binding sequence of Abd-B. Antp and Ubx homeodomains display indistinguishable preferences outside the core, while Ubx differs.
Suboesophageal ganglion (SEG) maturation during metamorphosis has a significant postembryonic requirement for Dfd.
The 2.7kb Dfd epidermal autoregulatory element (Dfd EAE) contains multiple modules that can function independently. Module E is a 120bp autoregulatory sequence, in vitro footprinting experiments detect a single Dfd binding site that is likely to be directly bound by Dfd protein in the developing embryo. A nearby block of DNA sequence contains functionally important cofactor binding sites.
trx exerts its effects by positively regulating homeotic gene expression, but Ubx, Antp, abd-A, Abd-B, Scr and Dfd all have different tissue-specific, parasegment-specific and promoter-specific reductions in expression in a trx mutant background.
Dfd is required to activate the 1.28 gene in the maxillary segment, but ectopic expression of Dfd is incapable of activating 1.28 elsewhere.
Dfd and Ba are both persistently expressed in ventral maxillary cells, and combinatorially specify a subsegmental code required for a group of cells to differentiate maxillary cirri. The regulatory effect of Dfd on Ba is mediated by a ventral maxillary-specific enhancer located 3' to the Ba transcription unit.
The homologs of Antp, ftz, Scr, Dfd, Ama, bcd, zen, pb and lab, but not zen2 are all present in D.pseudoobscura.pseudoobscura, in the same linear order and similarly spaced along the chromosome as in D.melanogaster.
Comparative analysis of the homeobox sequences reveals the subdivision of the Antp-type homeobox genes into three classes early in metazoan evolution, one includes Abd-B, the second includes abd-A, Ubx, Antp, Scr, Dfd and ftz, and the third includes zen, zen2, pb and lab.
The Dfd autoregulatory enhancer provides spatio-temporally restricted gene expression in the CNS of mid-gestation mouse embryos. The Dfd autoregulatory feed back loop has been conserved in the vertebrate and arthropod lineages.
Immunoprecipitation and filter elution assays identified a 900 bp autoregulatory element that specifically binds Dfd protein in embryos. Homeodomain exchange experiments demonstrated that the Dfd homeodomain interacts with the Antp transcription unit.
Dfd homeodomain binds optimally to a distinct DNA sequence.
Ectopic expression of Dfd activates Dfd expression in a subset of cells in different segments. These cells belong to the anterior compartments of the three thoracic and A1 to A8 abdominal segments, and the Dfd expression requires wild type wg and en expression. Indeed wg product can activate Dfd in many embryonic cells. Scr, Antp, Ubx and Abd-B repress Dfd both transcriptionally and at the phenotypic level, as does abd-A when supplied at high levels with a heat shock construct.
The effect of ectopic expression of Dfd was investigated on the normal development of sensory organs in the embryonic PNS.
Analysis of Dfd-Ubx chimeric coding regions identifies specific amino acid residues at the amino end of the Ubx homeo domain that are required to specifically regulate Antp transcription. In the context of Dfd protein, these amino-end residues are sufficient to switch from Dfd- to Ubx-like targeting specificity.
Ecol\lacZ reporter gene constructs demonstrate that human Hox4B upstream element can provide expression in a posterior head segment. One possible mechanism that would allow this is the conservation of the Dfd specific autoregulatory circuit in both the arthropod and chordate lineages.
Dfd gene product is not required for salivary gland development, at least up until the cuticle forms.
ae expression is not modulated by Dfd.
The roles of Dfd and lab have been studied through an analysis of their expression patterns in embryonic and imaginal tissues of mutant individuals.
Dfd and Ubx transcript patterns remain unaltered in tsh- embryos.
DNA binding assays demonstrate that there is a direct interaction between Dfd protein and the Dfd autoregulatory element.
Deletion analysis of the Dfd autoregulatory element, using a Ecol\lacZ reporter gene, demonstrates that the element contains compartment specific sub-elements similar to those of other homeotic loci.
Ectopic Dfd expression in the eye-antennal disc can disrupt the normal development of the head but has no detectable effect on the thoracic or abdominal segments.
Mutant analysis demonstrates that activation of Dfd is dependent on combinatorial input from at least three levels of early hierarchy.
Dfd- flies have defects in embryonic and larval heads: development of ectopic structures. Temperature shift studies demonstrate Dfd is required during segmentation and head involution, and during late larval and pupal stages.
The substitution of the Abd-B homeodomain for that of Dfd results in a protein that differs from the Dfd protein at only 30 residues so providing a different spectrum of regulatory targets. Dfd expression domain was normal in heat shocked embryos expressing the chimeric gene but transcript levels were low resulting in weak, patchy patterns.
Hsap\HOXD4 can specifically substitute for a normal regulatory function of its Drosophila homologue Dfd.
A modification and reduction in en and Dfd protein distribution is seen in mutant cad embryos.
The role of the homeodomain in determining target specificity has been tested by replacing the homeobox of Dfd with that of Ubx. The resulting chimeric protein cannot activate transcription from Dfd but can activate ectopic transcription of Antp, a gene normally regulated by Ubx.
Dfd expression is dependent on pair rule genes and at least two other factors that are differentially distributed along both the anterior posterior and dorsal ventral axis.
Dfd protein autoactivates expression from the Dfd locus during normal development.
Dfd transcript distribution supports the hypothesis that Dfd functions as a homeotic selector gene in the determination of posterior head segments.
The DNA sequences of the homeobox region of 11 Drosophila genes, including Dfd, have been compared.
The Dfd mutant maxillary palp phenotype can be attributed to cell death and subsequent duplication of bristles, but the mandibular and premandibular defects of the embryonic head cannot. Temperature shift experiments demonstrate that Dfd is required throughout the larval and pupal stages.
Null mutations act as recessive lethals. Homozygous or hemizygous animals die at the end of embryogenesis and show a spectrum of defects in the head. There are no discernible defects in the trunk. The head defects are associated with missing structures normally derived from the mandibular and maxillary segments, the dorsal lateral papillae of the maxillary sense organ, the mouth hooks, and the maxillary cirri. The remaining gnathal structures are present albeit disarranged likely due to abnormalities in the movements associated with head involution. A weak homeotic transformation (30-50% penetrance) has also been noted in animals hemizygous for a breakpoint-associated revertant of the single dominant gain-of-function allele (Dfdrv1). The phenotype is an apparent transformation of the H piece and lateral-graten which appear to be replaced by cephalopharyngeal plates. This phenotype has not been observed in any other mutant genotype and the reason for its low-penetrance production by this particular allele is not known. X-ray-induced somatic clones of Dfd- cells have shown that the locus is also required for adult head development. These cells develop normally in the thorax and abdomen but do not form structures in the ventral anterior aspect of the head; specifically the vibrissae and maxillary palps. Clones in the dorsal posterior part of the head form ectopic bristles which have been interpreted as a head to thoracic transformation. A temperature-conditional allele has been used to define two temperature-critical periods for Dfd+ activity. The first is during embryogenesis during segmentation and head involution, while the second occurs in the late third instar larval through mid-pupal stages. These times correlate nicely with the observed cuticular defects in mutant animals and the times of peak gene product accumulation. There is a single dominant gain-of-function allele which causes defects in the ventral aspects of the adult head similar to those seen in the Dfd- head clones mentioned above. There are no defects seen in the posterior of the head nor does this allele cause any embryonic or larval defects as a heterozygote, homozygote, or hemizygote. This allele is associated with a group of roo insertion elements (ca. 50 kb of inserted DNA) as well as a duplication of the 3' exons of the Dfd transcription unit. The mutant causes an extended spatial domain of expression of the locus into the eye portion of the eye-antennal disc as compared to the pattern seen in normal animals. The precise cause-effect relationship between the observed molecular defect and the mutant phenotype is not known except that partial deletion of the roo elements but not the 3' end duplication causes a reversion of the dominant phenotype and has no apparent effect on the wild type function of the resident Dfd gene. This dominant allele has been reverted and these revertants act as a simple recessive loss-of-function alleles with the one exception noted above. The Dfd transcript is initially detected at the blastoderm stage in a band of cells at the position of the future cephalic furrow. This RNA shows maximal accumulation from 6-12 hours of embryogenesis when it is found in the mandibular and maxillary lobes, as well as in the subesophageal region of the CNS. The amount of Dfd RNA diminishes through the first and second larval instars and peaks again during the third instar. At this point, it is found in the peripodial membrane cells of the eye-antennal discs. The cells which accumulate the RNA are those which have been fate mapped to give rise to the adult-head-capsule structures which are defective in Dfd- clones. Antibodies raised to Dfd protein have shown a similar pattern of accumulation to that seen for the RNA. The protein is first detected in cellular blastoderm stage in a stripe of six cells which circumscribes the embryo. As germ-band elongation proceeds and segmentation becomes evident Dfd protein is detected in the mandibular and maxillary lobes and a portion of the dorsal ridge. During germ-band shortening protein is no longer detectable in the mandibular lobe or in the anterior lateral aspect of the maxillary lobe. The process of head involution carries the Dfd-expressing cells interiorly where they are found in portions of the pharynx at the end of embryogenesis. Dfd-positive cells are also found in the subesophageal region of the CNS in the maxillary ganglion. This expression pattern has been shown to be dependent on the prior expression of the gap and pair-rule segmentation genes for its inception and on an autogenous regulatory element upstream of the Dfd transcription initiation site for the maintenance of Dfd expression into the later stages of embryogenesis. Immunostaining of imaginal discs shows Dfd-positive cells in the peripodial membrane of the eye-antennal discs with no detectable accumulation in the disc proper. There are also a few cells in the stalk of the labial discs which appear to accumulate Dfd protein. The Dfd cDNA driven by a heat shock promoter has been returned to flies and used to ectopi
 
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BG:DS00276.5
 
l(3)84Ae
 
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Shu and Li, 2013, Theor. Biol. Med. Model. 10(1): 11
A statistical thin-tail test of predicting regulatory regions in the Drosophila genome. [FBrf0221021]
Shu and Li, 2012, Comput. Biol. Med. 42(9): 935--941
A statistical fat-tail test of predicting regulatory regions in the Drosophila genome. [FBrf0219304]
Sorge et al., 2012, EMBO J. 31(15): 3323--3333
The cis-regulatory code of Hox function in Drosophila. [FBrf0219096]
Weiss et al., 2012, Genetics 190(2): 581--600
Huntingtin Aggregation Kinetics and Their Pathological Role in a Drosophila Huntington's Disease Model. [FBrf0217529]
Anderson et al., 2011, Development 138(10): 1957--1966
The enhancer of trithorax and polycomb gene Caf1/p55 is essential for cell survival and patterning in Drosophila development. [FBrf0213580]
Bantignies et al., 2011, Cell 144(2): 214--226
Polycomb-Dependent Regulatory Contacts between Distant Hox Loci in Drosophila. [FBrf0212775]
Lin et al., 2011, Bioinformatics 27(13): i275--i282
PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions. [FBrf0213957]
Lin et al., 2011, Insect Mol. Biol. 20(1): 87--95
Hormone receptor-like in 96 and Broad-Complex modulate phenobarbital induced transcription of cytochrome P450 CYP6D1 in Drosophila S2 cells. [FBrf0212740]
Nègre et al., 2011, Nature 471(7339): 527--531
A cis-regulatory map of the Drosophila genome. [FBrf0213303]
Roy et al., 2011, Mol. Genet. Genomics 285(2): 113--123
Lack of the Drosophila BEAF insulator proteins alters regulation of genes in the Antennapedia complex. [FBrf0212912]
Slattery et al., 2011, PLoS ONE 6(4): e14686
Genome-wide tissue-specific occupancy of the hox protein ultrabithorax and hox cofactor homothorax in Drosophila. [FBrf0213426]
Slattery et al., 2011, Cell 147(6): 1270--1282
Cofactor Binding Evokes Latent Differences in DNA Binding Specificity between Hox Proteins. [FBrf0216937]
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