A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\dnc

General Information
SymbolDmel\dncSpeciesD. melanogaster
NamedunceAnnotation symbolCG32498
Feature typeprotein_coding_geneFlyBase IDFBgn0000479
Gene Model StatusCurrent Stock availability 48 publicly available
Also Known AsPDE4, CG10791, fs(1)M42
Genomic Location
Chromosome (arm)XRecombination map1-3.9
Cytogenetic map3C9-3D1Sequence locationX:3,070,473..3,237,800 [+]

Genomic Maps

GBrowse View Help
Beta
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene dunce is referred to in FlyBase by the symbol Dmel\dnc (CG32498, FBgn0000479). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: 3',5'-cyclic-AMP phosphodiesterase activity. There is experimental evidence that it is involved in the biological process: synaptic transmission; conditioned taste aversion; short-term memory; learning; axon extension; lateral inhibition; memory; associative learning. 77 alleles are reported. The phenotypes of these alleles are annotated with: organ system; nervous system; organ system subdivision; embryonic/larval neuron; synapse; somatic cell; female germline cyst; egg; synaptic neuropil subdomain; postsynaptic membrane. It has 17 annotated transcripts and 17 annotated polypeptides. Protein features are: 3'5'-cyclic nucleotide phosphodiesterase; 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain; 3'5'-cyclic nucleotide phosphodiesterase, conserved site; HD/PDEase domain; Twin-arginine translocation pathway, signal sequence. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed within 00-06 and 12-24 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval/adult central nervous system, adult Malpighian tubules, adult heart, adult salivary gland, larval trachea, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1624686_a_at completely aligns to an exonic region common to each of the 12 FlyBase-annotated transcript isoforms of dnc. Gene sequence location is X:3070473..3237800.

User Contributed Data
External Summaries
hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
dnc: dunce (R. Davis; J.C. Hall)
Gene encodes a cAMP-specific phosphodiesterase. Mutants blocked or impaired in learning, with respect to several of the conditioning tests used on groups of flies or larvae or on individual adults, e.g., those involving odors and electric shocks or sugars (Aceves-Pina and Quinn, 1979, Science 206: 93-96; Tempel, Bonini, Dawson, and Quinn, 1983, Proc. Nat. Acad. Sci. USA 80: 1482-86; see also Aceves-Pina, Booker, Duerr, Livingstone, Quinn, Smith, Sziber, Tempel, and Tully, 1983, Cold Spring Harbor Symp. Quant. Biol. 48: 831-40), visual stimuli (Folkers, 1982, J. Insect Physiol. 28: 535-39), or various elements of courtship (with respect to tests on mutant males or females, summarized by Hall, 1984, Dev. Genet. 4: 355-78); also, dncM14 males have reduced reproductive fitness after exposure to and courtship of immature females, i.e. when mutant males are put, post training, with mixed female/young male populations (Gailey, Siegel, and Hall, 1985, Genetics 111: 795-804). dnc females display an increased frequency of mating; it is suggested that this could account for their 50% normal longevity (Bellen and Kiger, 1987, Genetics 115: 153-60). dnc males are not conditioned to avoid virgin females by sequestration with such females in the presence of quinine; wild type males are (Ackerman and Siegel, 1986, J. Neurogenet. 3: 111-23). dnc mutants apparently learn normally, or nearly so, in certain experiments but have abnormally short memory (e.g., Dudai, 1979, J. Comp. Physiol. 130: 271-75; Mariath, 1985, J. Insect Physiol. 31: 779-87); more specifically, modificatons of original shock-odor testing system reveal that dnc is defective in short term memory, with long-term memory similar to wild type (Tully and Quinn, 1985, J. Comp. Physiol. 157: 263-77); dnc/+ females also memory deficient (Dudai, 1983, Proc. Nat. Acad. Sci. USA 80: 5445-48). Whereas dnc adults seem normal in several general behaviors (Dudai et al., 1976), the mutant displays aberrant "centrophobic" behavior [i.e., transient avoidance of the center of an arena displayed by normal adults (Gotz and Biesinger, 1985, J. Comp. Physiol. 156: 319-27, 329-37)]. Mosaic studies suggest that the focus of dnc/+ function is the brain, even though some learning responses demonstrated by headless flies (Aceves-Pina, et al.). Sensory fatigue associated with an adult mechanosensory neuron, as measured by bristle stimulation, occurs more rapidly than normal in dnc (allele not specified) (Corfas and Dudai, 1990, J. Neurosci. 10: 491-99). There is an increased number of mushroom-body axonal fibers in young adults expressing dnc1 or dncM11, which, unlike wild type, decreases over the next few days (Balling, Technau, and Heisenberg, 1987, J. Neurogenet. 4: 65-73). Mutations or deletions of the locus reduce or eliminate one form of cyclic AMP phosphodiesterase (EC 3.1.4.17) activity; caffeine, an inhibitor of this enzyme, decreases visual learning performance of normal adults and of dnc1 as well, suggesting that the biochemical effects of the drug and the mutation are not identical (Folkers and Spatz, 1984, J. Insect Physiol. 30: 957-65). The effects of dnc mutations on heat stability or Km of this activity indicate that the locus codes for this enzyme (Kauvar, 1982, J. Neurosci. 2: 1347-58; Davis and Kauvar); dnc variants also lead to increased levels of cyclic AMP (summarized by Davis and Kauvar, 1983), more specifically, such that most of the excess is in free (vs. bound) nucleotide; both fractions exist in whole-fly homogenates (Friedrich, Solti, Gyurkovicz, 1984, J. Cell. Biochem. 26: 197-203). dncM11 affects the level of phosphorylation of the regulatory subunit of the cyclic-AMP-dependent kinase (Devay, Pinter, Yalcin, and Friedrich, 1986, Neurosci. 18: 193-203). Levels of regulatory subunit of cAMP-dependent protein kinase tend to be higher than normal in dnc1 and dnc2 (Muller and Spatz, 1989, J. Neurogenet. 6: 95-114). dncM11 flies exhibit increased levels of expression of copia (Yun and Davis, 1989, Nucleic Acids Res. 17: 8313-26). dnc alleles cause varying degrees of female sterility; oocytes of females homozygous for amorphic alleles rarely reach maturity, and for the most part are not oviposited; 90% of the few that are oviposited are fragile, lacking a chorion. That this phenotype is somatic in origin is demonstrated by the observation that homozygous germ-line clones produce morphologically normal eggs; some of these eggs undergo a few abortive nuclear divisions, but they never reach an identifiable stage of oogenesis. The maternal-effect lethality partially suppressible by rut, which reduces adenylate cyclase activity. The earliest defect seen in the embryos produced by dnc rut females occurs soon after fertilization and affects DNA replication and mitosis, prevents nuclear migration, and leads to large polyploid nuclei; a later defect prevents cleavage nuclei from migrating into, or dividing in, the poserior region of the egg, affecting the developmental behavior or fate of blastoderm cells. The few surviving offspring of double-mutant females show frequent developmental abnormalities of the second and third thoracic, and the first five abdominal segments; these include deficiencies, duplications, and transformation of structures; some 15% of the daughters of such females lack one or both ovaries (Livingstone, Sziber, and Quinn, 1984, Cell 37: 205-15; Bellen, Gregory, Olsson, and Kiger, 1987, Dev. Biol. 121: 432-44; Bellen and Kiger, 1988, Roux's Arch. Dev. Biol. 197: 258-68).
hide Recent Updates
Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
Update Feed
Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
3C9-3D1  
Limits computationally determined from genome sequence between P{EP}EP1362 and P{EP}dncEP1395  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
3C12-3D4  
(determined by in situ hybridisation)  
3D4-3D4  
(determined by in situ hybridisation)  
3D4-3D4  
(determined by in situ hybridisation)  
3C8-3D4  
(determined by in situ hybridisation)  
3C12-3D4  
(determined by in situ hybridisation)  
3D2-3D2  
Determined by deficiency mapping (details unspecified).  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
The interval between sam and dnc is that between sam2 (rightmost allele of sam in this study) and dncM11 (leftmost allele of dnc in this study). dncM11 is 0.04 +/- 0.01cM to the left of a cluster of dnc mutations (dncM14, dncML, dnc1 and dnc2). The interval between dnc and cff is that between dnc1 and cff1.
Maps about five-eighths of the recombinational distance from w to ec.
hide Gene Model & Products
Please see the GBrowse view of Dmel\dnc for information on other features GBrowse View Help
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0070542 FBtr0070508 FBtr0070509 FBtr0333316 FBtr0333315 FBtr0333317 FBtr0070541 FBtr0070540 FBtr0070539 FBtr0070523 FBtr0070538 FBtr0070537 FBtr0070524 FBtr0070513 FBtr0070515 FBtr0333312 FBtr0070519 FBtr0070511 FBtr0070512 FBtr0333313 FBtr0333314 FBtr0070517 FBtr0070518 FBtr0070520 FBtr0070536 FBtr0070521 FBtr0070522 FBpp0070484 FBpp0070516 FBpp0070515 FBpp0070514 FBpp0070499 FBpp0070513 FBpp0305507 FBpp0070485 FBpp0305508 FBpp0305509 FBpp0070512 FBpp0070500 FBpp0070488 FBpp0070487 FBpp0070489 FBpp0070491 FBpp0305505 FBpp0305506 FBpp0070493 FBpp0070495 FBpp0070496 FBpp0070511 FBpp0305504 FBpp0070494 FBpp0070497 FBpp0070498 FBti0041798 FBti0107709 FBti0044156 FBti0047680 FBti0049930 FBti0099753 FBti0037253 FBti0011938 FBti0069024 FBti0070087 FBti0069855 FBti0056644 FBti0070512 FBti0007422 FBti0023141 FBti0071529 FBti0071731 FBti0071223 FBti0049819 FBti0075381 FBti0052559 FBti0049570 FBti0017587 FBti0052582 FBti0065046 FBti0046562 FBti0038783 FBti0068082 FBti0151512 FBti0052924 FBti0049918 FBti0055538 FBti0067620 FBti0049146 FBti0048560 FBti0109432 FBti0071438 FBti0007344 FBti0027277 FBti0046549 FBti0067063 FBti0102487 FBti0071642 FBti0038810 FBti0107696 FBti0054738 FBti0029811 FBti0035182 FBti0071726 FBti0067468 FBti0050560 FBti0067957 FBti0050901 FBti0149129 FBti0078297 FBti0148726 FBti0100433 FBti0051797
Comments on Gene Model
Tissue-specific extension of 3' UTRs observed during later stages (FBrf0218523, FBrf0219848); all variants may not be annotated
Annotated transcripts do not represent all supported alternative splices within 5' UTR.
Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 5.46
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0070517
  2841
  701
FBtr0070509
  4093
  1209
FBtr0070512
  3792
  1057
FBtr0070515
  3828
  1068
FBtr0070518
  2386
  642
FBtr0070521
  2435
  662
FBtr0070520
  2604
  814
FBtr0070511
  3834
  1070
FBtr0070513
  3831
  1070
FBtr0070522
  2167
  521
FBtr0070519
  11128
  983
FBtr0333312
  10159
  642
FBtr0333313
  8328
  703
FBtr0333314
  7521
  703
FBtr0333315
  9576
  1209
FBtr0333316
  8691
  715
FBtr0333317
  9456
  715
Additional Transcript Data & Comments
Reported size (kB)
9.6, 9.5, 7.4, 7.2, 7.0, 6.7, 5.0, 4.2 (northern blot)
9.5, 7.0 (unknown)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
dnc-PA  
FBpp0070493  
77.2  
701  
4.69  
dnc-PB  
FBpp0070485  
129.4  
1209  
5.99  
dnc-PC  
FBpp0070488  
113.5  
1057  
5.25  
dnc-PD  
FBpp0070491  
114.8  
1068  
5.20  
dnc-PE  
FBpp0070494  
70.6  
642  
4.71  
dnc-PF  
FBpp0070497  
73.0  
662  
4.74  
dnc-PG  
FBpp0070496  
89.1  
814  
4.72  
dnc-PI  
FBpp0070487  
115.1  
1070  
5.26  
dnc-PJ  
FBpp0070489  
115.1  
1070  
5.26  
dnc-PL  
FBpp0070498  
57.4  
521  
4.61  
dnc-PN  
FBpp0070495  
107.3  
983  
5.35  
dnc-PP  
FBpp0305504  
70.6  
642  
4.71  
dnc-PQ  
FBpp0305505  
77.4  
703  
4.69  
dnc-PR  
FBpp0305506  
77.4  
703  
4.69  
dnc-PS  
FBpp0305507  
129.4  
1209  
5.99  
dnc-PT  
FBpp0305508  
78.9  
715  
4.88  
dnc-PU  
FBpp0305509  
78.9  
715  
4.88  
Additional Polypeptide Data & Comments
Reported size (kDa)
777, 714, 702, 628 (aa); 85, 79, 77, 71 (kD predicted)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
No Assay Recorded
Stage
Tissue/Position (including subcellular localization)
Reference
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
Comment:maternally deposited
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
No Assay Recorded
Stage
Tissue/Position (including subcellular localization)
Reference
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Immunolocalization of dnc protein to thin sections of adult brain shows that it is largely concentrated in the mushroom bodies. Within mushroom bodies, the γ lobes stain more intensely than the α or β lobes, peduncle staining intensity varies with position and calyx expression is uniform. An intermediate level of staining is seen in most neuropil structures including the inner optic lobe neuropil, protocerebrum, suboesophageal ganglion, antennal lobes, and central complex. A conspicuous lack of staining is found in the photoreceptor cell layer, lamina, antennal nerve, and median bundle. Staining was also observed in the neuropil of thoracic and abdominal ganglia. Intense staining was observed in larval mushroom body neuropil. In contrast to adult brain, some cell body staining was observed in the larval mushroom body.
Marker for
Subcellular Localization (GO Cellular Component)
CV term
References
hide Expression Deduced from Reporters
Reporter: P{lacZ}dnc-tr60
Stage
Tissue/Position (including subcellular localization)
Reference
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)


   Styles
   Scales

Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval/adult central nervous system, adult Malpighian tubules, adult heart, adult salivary gland, larval trachea, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 134.45
Larval Midgut
 
 62.3
Larval Hindgut
 
 63.9
Larval Malpighian Tubules
 
 49.5
Larval Fat Body
 
 34.2
Larval Salivary Gland
 
 57.4
Larval Trachea
 
 125.875
Larval Carcass
 
 250.975
Adult Head
 
 96.7
Adult Eye
 
 131.825
Adult Brain
 
 294.2
Adult Thoracic-Abdominal Ganglion
 
 240.4
Adult Crop
 
 64.2
Adult Midgut
 
 54.3
Adult Hindgut
 
 47.3
Adult Malpighian Tubules
 
 109.4
Adult Fat Body
 
 56.9
Adult Salivary Gland
 
 437.2
Adult Heart
 
 170.825
Adult VirginFemale Spermatheca
 
 56.7
Adult InseminatedFemale Spermatheca
 
 64.5
Adult Ovary
 
 71.8
Adult Testis
 
 14.9
Adult Male Accessory Gland
 
 60.5
Adult Carcass
 
 117.4
Expression Level Scale
 None 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 134.45
Larval Midgut
 
 62.3
Larval Hindgut
 
 63.9
Larval Malpighian Tubules
 
 49.5
Larval Fat Body
 
 34.2
Larval Salivary Gland
 
 57.4
Larval Trachea
 
 125.875
Larval Carcass
 
 250.975
Adult Head
 
 96.7
Adult Eye
 
 131.825
Adult Brain
 
 294.2
Adult Thoracic-Abdominal Ganglion
 
 240.4
Adult Crop
 
 64.2
Adult Midgut
 
 54.3
Adult Hindgut
 
 47.3
Adult Malpighian Tubules
 
 109.4
Adult Fat Body
 
 56.9
Adult Salivary Gland
 
 437.2
Adult Heart
 
 170.825
Adult VirginFemale Spermatheca
 
 56.7
Adult InseminatedFemale Spermatheca
 
 64.5
Adult Ovary
 
 71.8
Adult Testis
 
 14.9
Adult Male Accessory Gland
 
 60.5
Adult Carcass
 
 117.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 134.45
Larval Midgut
 
 62.3
Larval Hindgut
 
 63.9
Larval Malpighian Tubules
 
 49.5
Larval Fat Body
 
 34.2
Larval Salivary Gland
 
 57.4
Larval Trachea
 
 125.875
Larval Carcass
 
 250.975
Adult Head
 
 96.7
Adult Eye
 
 131.825
Adult Brain
 
 294.2
Adult Thoracic-Abdominal Ganglion
 
 240.4
Adult Crop
 
 64.2
Adult Midgut
 
 54.3
Adult Hindgut
 
 47.3
Adult Malpighian Tubules
 
 109.4
Adult Fat Body
 
 56.9
Adult Salivary Gland
 
 437.2
Adult Heart
 
 170.825
Adult VirginFemale Spermatheca
 
 56.7
Adult InseminatedFemale Spermatheca
 
 64.5
Adult Ovary
 
 71.8
Adult Testis
 
 14.9
Adult Male Accessory Gland
 
 60.5
Adult Carcass
 
 117.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 134.45
Larval Midgut
 
 62.3
Larval Hindgut
 
 63.9
Larval Malpighian Tubules
 
 49.5
Larval Fat Body
 
 34.2
Larval Salivary Gland
 
 57.4
Larval Trachea
 
 125.875
Larval Carcass
 
 250.975
Adult Head
 
 96.7
Adult Eye
 
 131.825
Adult Brain
 
 294.2
Adult Thoracic-Abdominal Ganglion
 
 240.4
Adult Crop
 
 64.2
Adult Midgut
 
 54.3
Adult Hindgut
 
 47.3
Adult Malpighian Tubules
 
 109.4
Adult Fat Body
 
 56.9
Adult Salivary Gland
 
 437.2
Adult Heart
 
 170.825
Adult VirginFemale Spermatheca
 
 56.7
Adult InseminatedFemale Spermatheca
 
 64.5
Adult Ovary
 
 71.8
Adult Testis
 
 14.9
Adult Male Accessory Gland
 
 60.5
Adult Carcass
 
 117.4
Expression Level Scale
 Very high 
log, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 134.45
Larval Midgut
 
 62.3
Larval Hindgut
 
 63.9
Larval Malpighian Tubules
 
 49.5
Larval Fat Body
 
 34.2
Larval Salivary Gland
 
 57.4
Larval Trachea
 
 125.875
Larval Carcass
 
 250.975
Adult Head
 
 96.7
Adult Eye
 
 131.825
Adult Brain
 
 294.2
Adult Thoracic-Abdominal Ganglion
 
 240.4
Adult Crop
 
 64.2
Adult Midgut
 
 54.3
Adult Hindgut
 
 47.3
Adult Malpighian Tubules
 
 109.4
Adult Fat Body
 
 56.9
Adult Salivary Gland
 
 437.2
Adult Heart
 
 170.825
Adult VirginFemale Spermatheca
 
 56.7
Adult InseminatedFemale Spermatheca
 
 64.5
Adult Ovary
 
 71.8
Adult Testis
 
 14.9
Adult Male Accessory Gland
 
 60.5
Adult Carcass
 
 117.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 134.45
Larval Midgut
 
 62.3
Larval Hindgut
 
 63.9
Larval Malpighian Tubules
 
 49.5
Larval Fat Body
 
 34.2
Larval Salivary Gland
 
 57.4
Larval Trachea
 
 125.875
Larval Carcass
 
 250.975
Adult Head
 
 96.7
Adult Eye
 
 131.825
Adult Brain
 
 294.2
Adult Thoracic-Abdominal Ganglion
 
 240.4
Adult Crop
 
 64.2
Adult Midgut
 
 54.3
Adult Hindgut
 
 47.3
Adult Malpighian Tubules
 
 109.4
Adult Fat Body
 
 56.9
Adult Salivary Gland
 
 437.2
Adult Heart
 
 170.825
Adult VirginFemale Spermatheca
 
 56.7
Adult InseminatedFemale Spermatheca
 
 64.5
Adult Ovary
 
 71.8
Adult Testis
 
 14.9
Adult Male Accessory Gland
 
 60.5
Adult Carcass
 
 117.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 134.45
Larval Midgut
 
 62.3
Larval Hindgut
 
 63.9
Larval Malpighian Tubules
 
 49.5
Larval Fat Body
 
 34.2
Larval Salivary Gland
 
 57.4
Larval Trachea
 
 125.875
Larval Carcass
 
 250.975
Adult Head
 
 96.7
Adult Eye
 
 131.825
Adult Brain
 
 294.2
Adult Thoracic-Abdominal Ganglion
 
 240.4
Adult Crop
 
 64.2
Adult Midgut
 
 54.3
Adult Hindgut
 
 47.3
Adult Malpighian Tubules
 
 109.4
Adult Fat Body
 
 56.9
Adult Salivary Gland
 
 437.2
Adult Heart
 
 170.825
Adult VirginFemale Spermatheca
 
 56.7
Adult InseminatedFemale Spermatheca
 
 64.5
Adult Ovary
 
 71.8
Adult Testis
 
 14.9
Adult Male Accessory Gland
 
 60.5
Adult Carcass
 
 117.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 134.45
Larval Midgut
 
 62.3
Larval Hindgut
 
 63.9
Larval Malpighian Tubules
 
 49.5
Larval Fat Body
 
 34.2
Larval Salivary Gland
 
 57.4
Larval Trachea
 
 125.875
Larval Carcass
 
 250.975
Adult Head
 
 96.7
Adult Eye
 
 131.825
Adult Brain
 
 294.2
Adult Thoracic-Abdominal Ganglion
 
 240.4
Adult Crop
 
 64.2
Adult Midgut
 
 54.3
Adult Hindgut
 
 47.3
Adult Malpighian Tubules
 
 109.4
Adult Fat Body
 
 56.9
Adult Salivary Gland
 
 437.2
Adult Heart
 
 170.825
Adult VirginFemale Spermatheca
 
 56.7
Adult InseminatedFemale Spermatheca
 
 64.5
Adult Ovary
 
 71.8
Adult Testis
 
 14.9
Adult Male Accessory Gland
 
 60.5
Adult Carcass
 
 117.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 96.7
 
NA 
Eye
 
 131.825
 
NA 
Brain
 
 294.2
 
134.45 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 240.4
 
NA 
Crop
 
 64.2
 
62.3 
Midgut
 
 54.3
 
63.9 
Hindgut
 
 47.3
 
49.5 
Malpighian Tubules
 
 109.4
 
34.2 
Fat Body
 
 56.9
 
57.4 
Salivary Gland
 
 437.2
 
NA 
Heart
 
 170.825
 
125.875 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 56.7
 
NA 
InseminatedFemale Spermatheca
 
 64.5
 
NA 
Ovary
 
 71.8
 
NA 
Testis
 
 14.9
 
NA 
Male Accessory Gland
 
 60.5
 
250.975 
Carcass
 
 117.4

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 3
central nervous system, larvae L3
 
 14
central nervous system, pupae P8
 
 26
head, virgin 1-day female
 
 14
head, virgin 4-day female
 
 17
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 19
head, mated 4-day female
 
 15
head, mated 20-day female
 
 7
head, mated 1-day male
 
 19
head, mated 4-day male
 
 26
head, mated 20-day male
 
 16
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 2
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 9
digestive system, 20-day adult
 
 5
fat body, larvae L3 wandering
 
 1
fat body, white prepupae
 
 2
fat body, pupae P8
 
 13
carcass, larvae L3 wandering
 
 8
carcass, 1-day adult
 
 11
carcass, 4-day adult
 
 15
carcass, 20-day adult
 
 7
ovary, virgin 4-day female
 
 7
ovary, mated 4-day female
 
 6
testis, mated 4-day male
 
 0
accessory gland, mated 4-day male
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 3
central nervous system, larvae L3
 
 14
central nervous system, pupae P8
 26
head, virgin 1-day female
 
 14
head, virgin 4-day female
 
 17
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 19
head, mated 4-day female
 
 15
head, mated 20-day female
 
 7
head, mated 1-day male
 
 19
head, mated 4-day male
 26
head, mated 20-day male
 
 16
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 2
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 9
digestive system, 20-day adult
 
 5
fat body, larvae L3 wandering
 
 1
fat body, white prepupae
 
 2
fat body, pupae P8
 
 13
carcass, larvae L3 wandering
 
 8
carcass, 1-day adult
 
 11
carcass, 4-day adult
 
 15
carcass, 20-day adult
 
 7
ovary, virgin 4-day female
 
 7
ovary, mated 4-day female
 
 6
testis, mated 4-day male
 
 0
accessory gland, mated 4-day male
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 3
central nervous system, larvae L3
 
 14
central nervous system, pupae P8
 
 26
head, virgin 1-day female
 
 14
head, virgin 4-day female
 
 17
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 19
head, mated 4-day female
 
 15
head, mated 20-day female
 
 7
head, mated 1-day male
 
 19
head, mated 4-day male
 
 26
head, mated 20-day male
 
 16
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 2
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 9
digestive system, 20-day adult
 
 5
fat body, larvae L3 wandering
 
 1
fat body, white prepupae
 
 2
fat body, pupae P8
 
 13
carcass, larvae L3 wandering
 
 8
carcass, 1-day adult
 
 11
carcass, 4-day adult
 
 15
carcass, 20-day adult
 
 7
ovary, virgin 4-day female
 
 7
ovary, mated 4-day female
 
 6
testis, mated 4-day male
 
 0
accessory gland, mated 4-day male
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 3
central nervous system, larvae L3
 
 14
central nervous system, pupae P8
 
 26
head, virgin 1-day female
 
 14
head, virgin 4-day female
 
 17
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 19
head, mated 4-day female
 
 15
head, mated 20-day female
 
 7
head, mated 1-day male
 
 19
head, mated 4-day male
 
 26
head, mated 20-day male
 
 16
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 2
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 9
digestive system, 20-day adult
 
 5
fat body, larvae L3 wandering
 
 1
fat body, white prepupae
 
 2
fat body, pupae P8
 
 13
carcass, larvae L3 wandering
 
 8
carcass, 1-day adult
 
 11
carcass, 4-day adult
 
 15
carcass, 20-day adult
 
 7
ovary, virgin 4-day female
 
 7
ovary, mated 4-day female
 
 6
testis, mated 4-day male
 
 0
accessory gland, mated 4-day male
 
 1
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 3
central nervous system, larvae L3
 
 14
central nervous system, pupae P8
 
 26
head, virgin 1-day female
 
 14
head, virgin 4-day female
 
 17
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 19
head, mated 4-day female
 
 15
head, mated 20-day female
 
 7
head, mated 1-day male
 
 19
head, mated 4-day male
 
 26
head, mated 20-day male
 
 16
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 2
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 9
digestive system, 20-day adult
 
 5
fat body, larvae L3 wandering
 
 1
fat body, white prepupae
 
 2
fat body, pupae P8
 
 13
carcass, larvae L3 wandering
 
 8
carcass, 1-day adult
 
 11
carcass, 4-day adult
 
 15
carcass, 20-day adult
 
 7
ovary, virgin 4-day female
 
 7
ovary, mated 4-day female
 
 6
testis, mated 4-day male
 
 0
accessory gland, mated 4-day male
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 3
central nervous system, larvae L3
 
 14
central nervous system, pupae P8
 26
head, virgin 1-day female
 
 14
head, virgin 4-day female
 
 17
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 19
head, mated 4-day female
 
 15
head, mated 20-day female
 
 7
head, mated 1-day male
 
 19
head, mated 4-day male
 26
head, mated 20-day male
 
 16
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 2
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 9
digestive system, 20-day adult
 
 5
fat body, larvae L3 wandering
 
 1
fat body, white prepupae
 
 2
fat body, pupae P8
 
 13
carcass, larvae L3 wandering
 
 8
carcass, 1-day adult
 
 11
carcass, 4-day adult
 
 15
carcass, 20-day adult
 
 7
ovary, virgin 4-day female
 
 7
ovary, mated 4-day female
 
 6
testis, mated 4-day male
 
 0
accessory gland, mated 4-day male
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 3
central nervous system, larvae L3
 
 14
central nervous system, pupae P8
 
 26
head, virgin 1-day female
 
 14
head, virgin 4-day female
 
 17
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 19
head, mated 4-day female
 
 15
head, mated 20-day female
 
 7
head, mated 1-day male
 
 19
head, mated 4-day male
 
 26
head, mated 20-day male
 
 16
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 2
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 9
digestive system, 20-day adult
 
 5
fat body, larvae L3 wandering
 
 1
fat body, white prepupae
 
 2
fat body, pupae P8
 
 13
carcass, larvae L3 wandering
 
 8
carcass, 1-day adult
 
 11
carcass, 4-day adult
 
 15
carcass, 20-day adult
 
 7
ovary, virgin 4-day female
 
 7
ovary, mated 4-day female
 
 6
testis, mated 4-day male
 
 0
accessory gland, mated 4-day male
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 3
central nervous system, larvae L3
 
 14
central nervous system, pupae P8
 
 26
head, virgin 1-day female
 
 14
head, virgin 4-day female
 
 17
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 19
head, mated 4-day female
 
 15
head, mated 20-day female
 
 7
head, mated 1-day male
 
 19
head, mated 4-day male
 
 26
head, mated 20-day male
 
 16
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 2
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 9
digestive system, 20-day adult
 
 5
fat body, larvae L3 wandering
 
 1
fat body, white prepupae
 
 2
fat body, pupae P8
 
 13
carcass, larvae L3 wandering
 
 8
carcass, 1-day adult
 
 11
carcass, 4-day adult
 
 15
carcass, 20-day adult
 
 7
ovary, virgin 4-day female
 
 7
ovary, mated 4-day female
 
 6
testis, mated 4-day male
 
 0
accessory gland, mated 4-day male
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 
central nervous system, larvae L3
 
 
central nervous system, pupae P8
 
 
head, virgin 1-day female
 
 
head, virgin 4-day female
 
 
head, virgin 20-day female
 
 
head, mated 1-day female
 
 
head, mated 4-day female
 
 
head, mated 20-day female
 
 
head, mated 1-day male
 
 
head, mated 4-day male
 
 
head, mated 20-day male
 
 
salivary gland, larvae L3 wandering
 
 
salivary gland, white prepupae
 
 
digestive system, larvae L3 wandering
 
 
digestive system, 1-day adult
 
 
digestive system, 4-day adult
 
 
digestive system, 20-day adult
 
 
fat body, larvae L3 wandering
 
 
fat body, white prepupae
 
 
fat body, pupae P8
 
 
carcass, larvae L3 wandering
 
 
carcass, 1-day adult
 
 
carcass, 4-day adult
 
 
carcass, 20-day adult
 
 
ovary, virgin 4-day female
 
 
ovary, mated 4-day female
 
 
testis, mated 4-day male
 
 
accessory gland, mated 4-day male
 
 

hide modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)


   Styles
   Scales

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed within 00-06 and 12-24 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 3
embryo 04-06hr
 
 1
embryo 06-08hr
 
 0
embryo 08-10hr
 
 1
embryo 10-12hr
 
 1
embryo 12-14hr
 
 2
embryo 14-16hr
 
 3
embryo 16-18hr
 
 4
embryo 18-20hr
 
 5
embryo 20-22hr
 
 6
embryo 22-24hr
 
 7
larva L1
 
 6
larva L2
 
 4
larva L3 12hr old
 
 4
larva L3 puffstage 1-2
 
 2
larva L3 puffstage 3-6
 
 4
larva L3 puffstage 7-9
 
 4
white prepupae new
 
 6
white prepupae 12hr
 
 3
white prepupae 24hr
 
 2
pupae 2d postWPP
 
 4
pupae 3d postWPP
 
 6
pupae 4d postWPP
 
 3
adult male 01day
 
 8
adult male 05day
 
 10
adult male 30day
 
 7
adult female 01day
 
 5
adult female 05day
 
 5
adult female 30day
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 3
embryo 04-06hr
 
 1
embryo 06-08hr
 
 0
embryo 08-10hr
 
 1
embryo 10-12hr
 
 1
embryo 12-14hr
 
 2
embryo 14-16hr
 
 3
embryo 16-18hr
 
 4
embryo 18-20hr
 
 5
embryo 20-22hr
 
 6
embryo 22-24hr
 
 7
larva L1
 
 6
larva L2
 
 4
larva L3 12hr old
 
 4
larva L3 puffstage 1-2
 
 2
larva L3 puffstage 3-6
 
 4
larva L3 puffstage 7-9
 
 4
white prepupae new
 
 6
white prepupae 12hr
 
 3
white prepupae 24hr
 
 2
pupae 2d postWPP
 
 4
pupae 3d postWPP
 
 6
pupae 4d postWPP
 
 3
adult male 01day
 
 8
adult male 05day
 
 10
adult male 30day
 
 7
adult female 01day
 
 5
adult female 05day
 
 5
adult female 30day
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 3
embryo 04-06hr
 
 1
embryo 06-08hr
 
 0
embryo 08-10hr
 
 1
embryo 10-12hr
 
 1
embryo 12-14hr
 
 2
embryo 14-16hr
 
 3
embryo 16-18hr
 
 4
embryo 18-20hr
 
 5
embryo 20-22hr
 
 6
embryo 22-24hr
 
 7
larva L1
 
 6
larva L2
 
 4
larva L3 12hr old
 
 4
larva L3 puffstage 1-2
 
 2
larva L3 puffstage 3-6
 
 4
larva L3 puffstage 7-9
 
 4
white prepupae new
 
 6
white prepupae 12hr
 
 3
white prepupae 24hr
 
 2
pupae 2d postWPP
 
 4
pupae 3d postWPP
 
 6
pupae 4d postWPP
 
 3
adult male 01day
 
 8
adult male 05day
 
 10
adult male 30day
 
 7
adult female 01day
 
 5
adult female 05day
 
 5
adult female 30day
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 3
embryo 04-06hr
 
 1
embryo 06-08hr
 
 0
embryo 08-10hr
 
 1
embryo 10-12hr
 
 1
embryo 12-14hr
 
 2
embryo 14-16hr
 
 3
embryo 16-18hr
 
 4
embryo 18-20hr
 
 5
embryo 20-22hr
 
 6
embryo 22-24hr
 
 7
larva L1
 
 6
larva L2
 
 4
larva L3 12hr old
 
 4
larva L3 puffstage 1-2
 
 2
larva L3 puffstage 3-6
 
 4
larva L3 puffstage 7-9
 
 4
white prepupae new
 
 6
white prepupae 12hr
 
 3
white prepupae 24hr
 
 2
pupae 2d postWPP
 
 4
pupae 3d postWPP
 
 6
pupae 4d postWPP
 
 3
adult male 01day
 
 8
adult male 05day
 
 10
adult male 30day
 
 7
adult female 01day
 
 5
adult female 05day
 
 5
adult female 30day
 
 5
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 3
embryo 04-06hr
 
 1
embryo 06-08hr
 
 0
embryo 08-10hr
 
 1
embryo 10-12hr
 
 1
embryo 12-14hr
 
 2
embryo 14-16hr
 
 3
embryo 16-18hr
 
 4
embryo 18-20hr
 
 5
embryo 20-22hr
 
 6
embryo 22-24hr
 
 7
larva L1
 
 6
larva L2
 
 4
larva L3 12hr old
 
 4
larva L3 puffstage 1-2
 
 2
larva L3 puffstage 3-6
 
 4
larva L3 puffstage 7-9
 
 4
white prepupae new
 
 6
white prepupae 12hr
 
 3
white prepupae 24hr
 
 2
pupae 2d postWPP
 
 4
pupae 3d postWPP
 
 6
pupae 4d postWPP
 
 3
adult male 01day
 
 8
adult male 05day
 
 10
adult male 30day
 
 7
adult female 01day
 
 5
adult female 05day
 
 5
adult female 30day
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 3
embryo 04-06hr
 
 1
embryo 06-08hr
 
 0
embryo 08-10hr
 
 1
embryo 10-12hr
 
 1
embryo 12-14hr
 
 2
embryo 14-16hr
 
 3
embryo 16-18hr
 
 4
embryo 18-20hr
 
 5
embryo 20-22hr
 
 6
embryo 22-24hr
 
 7
larva L1
 
 6
larva L2
 
 4
larva L3 12hr old
 
 4
larva L3 puffstage 1-2
 
 2
larva L3 puffstage 3-6
 
 4
larva L3 puffstage 7-9
 
 4
white prepupae new
 
 6
white prepupae 12hr
 
 3
white prepupae 24hr
 
 2
pupae 2d postWPP
 
 4
pupae 3d postWPP
 
 6
pupae 4d postWPP
 
 3
adult male 01day
 
 8
adult male 05day
 
 10
adult male 30day
 
 7
adult female 01day
 
 5
adult female 05day
 
 5
adult female 30day
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 3
embryo 04-06hr
 
 1
embryo 06-08hr
 
 0
embryo 08-10hr
 
 1
embryo 10-12hr
 
 1
embryo 12-14hr
 
 2
embryo 14-16hr
 
 3
embryo 16-18hr
 
 4
embryo 18-20hr
 
 5
embryo 20-22hr
 
 6
embryo 22-24hr
 
 7
larva L1
 
 6
larva L2
 
 4
larva L3 12hr old
 
 4
larva L3 puffstage 1-2
 
 2
larva L3 puffstage 3-6
 
 4
larva L3 puffstage 7-9
 
 4
white prepupae new
 
 6
white prepupae 12hr
 
 3
white prepupae 24hr
 
 2
pupae 2d postWPP
 
 4
pupae 3d postWPP
 
 6
pupae 4d postWPP
 
 3
adult male 01day
 
 8
adult male 05day
 
 10
adult male 30day
 
 7
adult female 01day
 
 5
adult female 05day
 
 5
adult female 30day
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 6
embryo 02-04hr
 
 3
embryo 04-06hr
 
 1
embryo 06-08hr
 
 0
embryo 08-10hr
 
 1
embryo 10-12hr
 
 1
embryo 12-14hr
 
 2
embryo 14-16hr
 
 3
embryo 16-18hr
 
 4
embryo 18-20hr
 
 5
embryo 20-22hr
 
 6
embryo 22-24hr
 
 7
larva L1
 
 6
larva L2
 
 4
larva L3 12hr old
 
 4
larva L3 puffstage 1-2
 
 2
larva L3 puffstage 3-6
 
 4
larva L3 puffstage 7-9
 
 4
white prepupae new
 
 6
white prepupae 12hr
 
 3
white prepupae 24hr
 
 2
pupae 2d postWPP
 
 4
pupae 3d postWPP
 
 6
pupae 4d postWPP
 
 3
adult male 01day
 
 8
adult male 05day
 
 10
adult male 30day
 
 7
adult female 01day
 
 5
adult female 05day
 
 5
adult female 30day
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

modENCODE Temporal Expression Data (Graveley et al., 2011)
hide modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 2
Schneider line 2 Sg4
 
 11
embryonic 1182-4H
 
 4
embryonic GM2
 
 4
embryonic Kc167
 
 2
embryonic S1
 
 2
embryonic S3
 
 2
leg disc CME L1
 
 7
wing disc CME-W2
 
 2
wing disc ML-DmD8
 
 7
wing disc ML-DmD9
 
 3
wing disc ML-DmD16-c3
 
 7
wing disc ML-DmD21
 
 2
wing disc ML-DmD32
 
 6
haltere disc ML-DmD17-c3
 
 8
eye-antennal disc ML-DmD11
 
 1
antennal disc ML-DmD20-c5
 
 2
mixed discs ML-DmD4-c1
 
 5
CNS ML-DmBG1-c1
 
 18
CNS ML-DmBG2-c2
 
 1
tumorous blood cells mbn2
 
 9
ovary fGS/OSS
 
 5
ovary OSC
 
 5
ovary OSS
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 2
Schneider line 2 Sg4
 
 11
embryonic 1182-4H
 
 4
embryonic GM2
 
 4
embryonic Kc167
 
 2
embryonic S1
 
 2
embryonic S3
 
 2
leg disc CME L1
 
 7
wing disc CME-W2
 
 2
wing disc ML-DmD8
 
 7
wing disc ML-DmD9
 
 3
wing disc ML-DmD16-c3
 
 7
wing disc ML-DmD21
 
 2
wing disc ML-DmD32
 
 6
haltere disc ML-DmD17-c3
 
 8
eye-antennal disc ML-DmD11
 
 1
antennal disc ML-DmD20-c5
 
 2
mixed discs ML-DmD4-c1
 
 5
CNS ML-DmBG1-c1
 
 18
CNS ML-DmBG2-c2
 
 1
tumorous blood cells mbn2
 
 9
ovary fGS/OSS
 
 5
ovary OSC
 
 5
ovary OSS
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 2
Schneider line 2 Sg4
 
 11
embryonic 1182-4H
 
 4
embryonic GM2
 
 4
embryonic Kc167
 
 2
embryonic S1
 
 2
embryonic S3
 
 2
leg disc CME L1
 
 7
wing disc CME-W2
 
 2
wing disc ML-DmD8
 
 7
wing disc ML-DmD9
 
 3
wing disc ML-DmD16-c3
 
 7
wing disc ML-DmD21
 
 2
wing disc ML-DmD32
 
 6
haltere disc ML-DmD17-c3
 
 8
eye-antennal disc ML-DmD11
 
 1
antennal disc ML-DmD20-c5
 
 2
mixed discs ML-DmD4-c1
 
 5
CNS ML-DmBG1-c1
 
 18
CNS ML-DmBG2-c2
 
 1
tumorous blood cells mbn2
 
 9
ovary fGS/OSS
 
 5
ovary OSC
 
 5
ovary OSS
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 2
Schneider line 2 Sg4
 
 11
embryonic 1182-4H
 
 4
embryonic GM2
 
 4
embryonic Kc167
 
 2
embryonic S1
 
 2
embryonic S3
 
 2
leg disc CME L1
 
 7
wing disc CME-W2
 
 2
wing disc ML-DmD8
 
 7
wing disc ML-DmD9
 
 3
wing disc ML-DmD16-c3
 
 7
wing disc ML-DmD21
 
 2
wing disc ML-DmD32
 
 6
haltere disc ML-DmD17-c3
 
 8
eye-antennal disc ML-DmD11
 
 1
antennal disc ML-DmD20-c5
 
 2
mixed discs ML-DmD4-c1
 
 5
CNS ML-DmBG1-c1
 
 18
CNS ML-DmBG2-c2
 
 1
tumorous blood cells mbn2
 
 9
ovary fGS/OSS
 
 5
ovary OSC
 
 5
ovary OSS
 
 1
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 2
Schneider line 2 Sg4
 
 11
embryonic 1182-4H
 
 4
embryonic GM2
 
 4
embryonic Kc167
 
 2
embryonic S1
 
 2
embryonic S3
 
 2
leg disc CME L1
 
 7
wing disc CME-W2
 
 2
wing disc ML-DmD8
 
 7
wing disc ML-DmD9
 
 3
wing disc ML-DmD16-c3
 
 7
wing disc ML-DmD21
 
 2
wing disc ML-DmD32
 
 6
haltere disc ML-DmD17-c3
 
 8
eye-antennal disc ML-DmD11
 
 1
antennal disc ML-DmD20-c5
 
 2
mixed discs ML-DmD4-c1
 
 5
CNS ML-DmBG1-c1
 
 18
CNS ML-DmBG2-c2
 
 1
tumorous blood cells mbn2
 
 9
ovary fGS/OSS
 
 5
ovary OSC
 
 5
ovary OSS
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
log, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 2
Schneider line 2 Sg4
 
 11
embryonic 1182-4H
 
 4
embryonic GM2
 
 4
embryonic Kc167
 
 2
embryonic S1
 
 2
embryonic S3
 
 2
leg disc CME L1
 
 7
wing disc CME-W2
 
 2
wing disc ML-DmD8
 
 7
wing disc ML-DmD9
 
 3
wing disc ML-DmD16-c3
 
 7
wing disc ML-DmD21
 
 2
wing disc ML-DmD32
 
 6
haltere disc ML-DmD17-c3
 
 8
eye-antennal disc ML-DmD11
 
 1
antennal disc ML-DmD20-c5
 
 2
mixed discs ML-DmD4-c1
 
 5
CNS ML-DmBG1-c1
 
 18
CNS ML-DmBG2-c2
 
 1
tumorous blood cells mbn2
 
 9
ovary fGS/OSS
 
 5
ovary OSC
 
 5
ovary OSS
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 2
Schneider line 2 Sg4
 
 11
embryonic 1182-4H
 
 4
embryonic GM2
 
 4
embryonic Kc167
 
 2
embryonic S1
 
 2
embryonic S3
 
 2
leg disc CME L1
 
 7
wing disc CME-W2
 
 2
wing disc ML-DmD8
 
 7
wing disc ML-DmD9
 
 3
wing disc ML-DmD16-c3
 
 7
wing disc ML-DmD21
 
 2
wing disc ML-DmD32
 
 6
haltere disc ML-DmD17-c3
 
 8
eye-antennal disc ML-DmD11
 
 1
antennal disc ML-DmD20-c5
 
 2
mixed discs ML-DmD4-c1
 
 5
CNS ML-DmBG1-c1
 
 18
CNS ML-DmBG2-c2
 
 1
tumorous blood cells mbn2
 
 9
ovary fGS/OSS
 
 5
ovary OSC
 
 5
ovary OSS
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 2
Schneider line 2 Sg4
 
 11
embryonic 1182-4H
 
 4
embryonic GM2
 
 4
embryonic Kc167
 
 2
embryonic S1
 
 2
embryonic S3
 
 2
leg disc CME L1
 
 7
wing disc CME-W2
 
 2
wing disc ML-DmD8
 
 7
wing disc ML-DmD9
 
 3
wing disc ML-DmD16-c3
 
 7
wing disc ML-DmD21
 
 2
wing disc ML-DmD32
 
 6
haltere disc ML-DmD17-c3
 
 8
eye-antennal disc ML-DmD11
 
 1
antennal disc ML-DmD20-c5
 
 2
mixed discs ML-DmD4-c1
 
 5
CNS ML-DmBG1-c1
 
 18
CNS ML-DmBG2-c2
 
 1
tumorous blood cells mbn2
 
 9
ovary fGS/OSS
 
 5
ovary OSC
 
 5
ovary OSS
 
 1
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Cell Line   Expression Level
Schneider line 2 S2R+
 
 
Schneider line 2 Sg4
 
 
embryonic 1182-4H
 
 
embryonic GM2
 
 
embryonic Kc167
 
 
embryonic S1
 
 
embryonic S3
 
 
leg disc CME L1
 
 
wing disc CME-W2
 
 
wing disc ML-DmD8
 
 
wing disc ML-DmD9
 
 
wing disc ML-DmD16-c3
 
 
wing disc ML-DmD21
 
 
wing disc ML-DmD32
 
 
haltere disc ML-DmD17-c3
 
 
eye-antennal disc ML-DmD11
 
 
antennal disc ML-DmD20-c5
 
 
mixed discs ML-DmD4-c1
 
 
CNS ML-DmBG1-c1
 
 
CNS ML-DmBG2-c2
 
 
tumorous blood cells mbn2
 
 
ovary fGS/OSS
 
 
ovary OSC
 
 
ovary OSS
 
 

hide modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 4
cold shock, 4-day adult
 
 3
heat shock, 4-day adult
 
 6
Cadmium 50 mM 6 hrs, larvae L3
 
 3
Cadmium 50 mM 12 hrs, larvae L3
 
 3
Cadmium 50 mM 48 hrs, 4-day adult
 
 7
Cadmium 100 mM 48 hrs, 4-day adult
 
 12
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 23
Zinc 5 mM 12 hrs, larvae L3
 
 3
Zinc 4.5 mM 48 hrs, 4-day adult
 
 17
Ethanol 2.5% 3 hrs, larvae L3
 
 7
Ethanol 5% 3 hrs, larvae L3
 
 4
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 10
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 5
Paraquat 5 mM 48 hrs, 4-day adult
 
 9
Paraquat 10 mM 48 hrs, 4-day adult
 
 8
Rotenone 2 μg 12 hrs, larvae L3
 
 3
Rotenone 8 μg 12 hrs, larvae L3
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 4
cold shock, 4-day adult
 
 3
heat shock, 4-day adult
 
 6
Cadmium 50 mM 6 hrs, larvae L3
 
 3
Cadmium 50 mM 12 hrs, larvae L3
 
 3
Cadmium 50 mM 48 hrs, 4-day adult
 
 7
Cadmium 100 mM 48 hrs, 4-day adult
 
 12
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 23
Zinc 5 mM 12 hrs, larvae L3
 
 3
Zinc 4.5 mM 48 hrs, 4-day adult
 
 17
Ethanol 2.5% 3 hrs, larvae L3
 
 7
Ethanol 5% 3 hrs, larvae L3
 
 4
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 10
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 5
Paraquat 5 mM 48 hrs, 4-day adult
 
 9
Paraquat 10 mM 48 hrs, 4-day adult
 
 8
Rotenone 2 μg 12 hrs, larvae L3
 
 3
Rotenone 8 μg 12 hrs, larvae L3
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 4
cold shock, 4-day adult
 
 3
heat shock, 4-day adult
 
 6
Cadmium 50 mM 6 hrs, larvae L3
 
 3
Cadmium 50 mM 12 hrs, larvae L3
 
 3
Cadmium 50 mM 48 hrs, 4-day adult
 
 7
Cadmium 100 mM 48 hrs, 4-day adult
 
 12
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 23
Zinc 5 mM 12 hrs, larvae L3
 
 3
Zinc 4.5 mM 48 hrs, 4-day adult
 
 17
Ethanol 2.5% 3 hrs, larvae L3
 
 7
Ethanol 5% 3 hrs, larvae L3
 
 4
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 10
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 5
Paraquat 5 mM 48 hrs, 4-day adult
 
 9
Paraquat 10 mM 48 hrs, 4-day adult
 
 8
Rotenone 2 μg 12 hrs, larvae L3
 
 3
Rotenone 8 μg 12 hrs, larvae L3
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 4
cold shock, 4-day adult
 
 3
heat shock, 4-day adult
 
 6
Cadmium 50 mM 6 hrs, larvae L3
 
 3
Cadmium 50 mM 12 hrs, larvae L3
 
 3
Cadmium 50 mM 48 hrs, 4-day adult
 
 7
Cadmium 100 mM 48 hrs, 4-day adult
 
 12
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 23
Zinc 5 mM 12 hrs, larvae L3
 
 3
Zinc 4.5 mM 48 hrs, 4-day adult
 
 17
Ethanol 2.5% 3 hrs, larvae L3
 
 7
Ethanol 5% 3 hrs, larvae L3
 
 4
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 10
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 5
Paraquat 5 mM 48 hrs, 4-day adult
 
 9
Paraquat 10 mM 48 hrs, 4-day adult
 
 8
Rotenone 2 μg 12 hrs, larvae L3
 
 3
Rotenone 8 μg 12 hrs, larvae L3
 
 3
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 4
cold shock, 4-day adult
 
 3
heat shock, 4-day adult
 
 6
Cadmium 50 mM 6 hrs, larvae L3
 
 3
Cadmium 50 mM 12 hrs, larvae L3
 
 3
Cadmium 50 mM 48 hrs, 4-day adult
 
 7
Cadmium 100 mM 48 hrs, 4-day adult
 
 12
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 23
Zinc 5 mM 12 hrs, larvae L3
 
 3
Zinc 4.5 mM 48 hrs, 4-day adult
 
 17
Ethanol 2.5% 3 hrs, larvae L3
 
 7
Ethanol 5% 3 hrs, larvae L3
 
 4
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 10
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 5
Paraquat 5 mM 48 hrs, 4-day adult
 
 9
Paraquat 10 mM 48 hrs, 4-day adult
 
 8
Rotenone 2 μg 12 hrs, larvae L3
 
 3
Rotenone 8 μg 12 hrs, larvae L3
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 4
cold shock, 4-day adult
 
 3
heat shock, 4-day adult
 
 6
Cadmium 50 mM 6 hrs, larvae L3
 
 3
Cadmium 50 mM 12 hrs, larvae L3
 
 3
Cadmium 50 mM 48 hrs, 4-day adult
 
 7
Cadmium 100 mM 48 hrs, 4-day adult
 
 12
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 23
Zinc 5 mM 12 hrs, larvae L3
 
 3
Zinc 4.5 mM 48 hrs, 4-day adult
 
 17
Ethanol 2.5% 3 hrs, larvae L3
 
 7
Ethanol 5% 3 hrs, larvae L3
 
 4
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 10
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 5
Paraquat 5 mM 48 hrs, 4-day adult
 
 9
Paraquat 10 mM 48 hrs, 4-day adult
 
 8
Rotenone 2 μg 12 hrs, larvae L3
 
 3
Rotenone 8 μg 12 hrs, larvae L3
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 4
cold shock, 4-day adult
 
 3
heat shock, 4-day adult
 
 6
Cadmium 50 mM 6 hrs, larvae L3
 
 3
Cadmium 50 mM 12 hrs, larvae L3
 
 3
Cadmium 50 mM 48 hrs, 4-day adult
 
 7
Cadmium 100 mM 48 hrs, 4-day adult
 
 12
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 23
Zinc 5 mM 12 hrs, larvae L3
 
 3
Zinc 4.5 mM 48 hrs, 4-day adult
 
 17
Ethanol 2.5% 3 hrs, larvae L3
 
 7
Ethanol 5% 3 hrs, larvae L3
 
 4
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 10
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 5
Paraquat 5 mM 48 hrs, 4-day adult
 
 9
Paraquat 10 mM 48 hrs, 4-day adult
 
 8
Rotenone 2 μg 12 hrs, larvae L3
 
 3
Rotenone 8 μg 12 hrs, larvae L3
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 4
cold shock, 4-day adult
 
 3
heat shock, 4-day adult
 
 6
Cadmium 50 mM 6 hrs, larvae L3
 
 3
Cadmium 50 mM 12 hrs, larvae L3
 
 3
Cadmium 50 mM 48 hrs, 4-day adult
 
 7
Cadmium 100 mM 48 hrs, 4-day adult
 
 12
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 23
Zinc 5 mM 12 hrs, larvae L3
 
 3
Zinc 4.5 mM 48 hrs, 4-day adult
 
 17
Ethanol 2.5% 3 hrs, larvae L3
 
 7
Ethanol 5% 3 hrs, larvae L3
 
 4
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 10
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 5
Paraquat 5 mM 48 hrs, 4-day adult
 
 9
Paraquat 10 mM 48 hrs, 4-day adult
 
 8
Rotenone 2 μg 12 hrs, larvae L3
 
 3
Rotenone 8 μg 12 hrs, larvae L3
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Treatment   Expression Level
extended cold, 4-day adult
 
 
cold shock, 4-day adult
 
 
heat shock, 4-day adult
 
 
Cadmium 50 mM 6 hrs, larvae L3
 
 
Cadmium 50 mM 12 hrs, larvae L3
 
 
Cadmium 50 mM 48 hrs, 4-day adult
 
 
Cadmium 100 mM 48 hrs, 4-day adult
 
 
Copper 0.5 mM 12 hrs, larvae L3
 
 
Copper 15 mM 48 hrs, 4-day adult
 
 
Zinc 5 mM 12 hrs, larvae L3
 
 
Zinc 4.5 mM 48 hrs, 4-day adult
 
 
Ethanol 2.5% 3 hrs, larvae L3
 
 
Ethanol 5% 3 hrs, larvae L3
 
 
Ethanol 10% 3 hrs, larvae L3
 
 
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 
Paraquat 5 mM 48 hrs, 4-day adult
 
 
Paraquat 10 mM 48 hrs, 4-day adult
 
 
Rotenone 2 μg 12 hrs, larvae L3
 
 
Rotenone 8 μg 12 hrs, larvae L3
 
 

hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyExpress - Embryonic expression images (BDGP data)
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
axon & motor neuron
axon & motor neuron (with dnc1)
axon & motor neuron (with dncM11)
cell body & embryonic neuron
growth cone & embryonic neuron
larval brain & neuron
mushroom body & neuron
neuromuscular junction & abdominal 4 ventral longitudinal muscle 3 & larva, with Scer\GAL4D42
neuromuscular junction & abdominal 4 ventral longitudinal muscle 4 & larva, with Scer\GAL4D42
neuromuscular junction & abdominal ventral longitudinal muscle 1 & larva, with Scer\GAL4D42
neuromuscular junction & abdominal ventral longitudinal muscle 2 & larva, with Scer\GAL4D42
nurse cell & nucleus
nurse cell & nucleus (with Df(1)N-64i16)
nurse cell & nucleus (with dnc225)
nurse cell & nucleus (with dncM14)
nurse cell & nucleus | germ-line clone
RP3 neuron & postsynaptic membrane
RP3 neuron & synaptic vesicle
hide Classical Alleles ( 66 )
For All Classical Alleles Show

Allele of dncClassMutagenStocksKnown lesion
dncM14amorphic allele - genetic evidence2 --
dnc1hypomorphic allele - genetic evidence2 --
dnc69h9
2 Yes
dnc81k1
2 Yes
dncEP9732 --
dncMLamorphic allele - genetic evidence, hypomorphic allele - genetic evidence1 --
dnc221b1 --
dnc5-HA-1947
1 --
dncd021041 --
dncd04464
1 --
dnce006181 --
dnce006361 --
dnce039241 --
dncEP13951 --
dncEY04001
1 --
dncEY079631 --
dncEY082681 --
dncf002101 --
dncf012381 --
dncf013811 --
dncf023771 --
dncf02901
1 --
dncf057691 --
dncf058101 --
dncf064041 --
dncKG03901
1 --
dncMB01572
1 --
dncMB04869
1 --
dncMI03415
1 --
dncMI06707
1 --
dncMI07567
1 --
dncNP3128
1 --
dncM11amorphic allele - genetic evidence0 --
dnc1950 --
dnc2140 --
dnc2250 --
dnc2870 --
dnc2hypomorphic allele - genetic evidence0 --
dnc350 --
dnc445
0 Yes
dnc54l9
0 Yes
dnc64j15
0 Yes
dnc7560 --
dnc75j31
0 Yes
dnc76b8
0 Yes
dnc7940 --
dnc79f
0 Yes
dnc81l6
0 Yes
dncBG010830 --
dncc017570 --
dncCKhypomorphic allele - genetic evidence0 --
dnce039340 --
dncf008460 --
dncf023800 --
dncf03661
0 --
dncf057920 --
dncf064860 --
dncG00219
0 --
dncGG01325
0 --
dncGG01330
0 --
dncGG01414
0 --
dncGG01529
0 --
dncGG01620
0 --
dncGG01836
0 --
dncM14R1wild-type allele0 --
dncunspecified0 --
hide Alleles Carried on Transgenic Constructs ( 11 )
For All Alleles Carried on Transgenic Constructs Show

Allele of dncClassMutagenStocksKnown lesion
dncGD50262 Yes
dncGD63802 Yes
dncGD63992 Yes
dncGD67171 Yes
dncGD70921 Yes
dncGL012261 Yes
dncJF025611 Yes
dncKK1085411 Yes
dnchs.PD0 Yes
dncNIG.10792R0 Yes
dncScer\UAS.cCa0 Yes
hide Aneuploid Aberrations
Disrupted in
Duplicated in
Not disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
heat-shock construct
reporter construct
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap binary system
insertion of enhancer trap
hide Gene Ontology: Function, Process & Cellular Component ( 23 unique terms )
hide Terms Based on Experimental Evidence ( 8 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component ( 0 terms)
hide Terms Based on Predictions or Assertions ( 18 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity with EMBL:U50157
Biological Process
CV term
References
traceable author statement
non-traceable author statement
traceable author statement
non-traceable author statement
non-traceable author statement
traceable author statement
traceable author statement
traceable author statement
traceable author statement
non-traceable author statement
Cellular Component ( 0 terms)
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
dnc allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
hide OrthoDB Orthologs (54) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
hideOrthologs in Drosophila Species (EOG666W59)
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly 
 
 
Drosophila simulans
 
Y
 
Drosophila sechellia
 
Y
 
Drosophila erecta
 
Y
 
Drosophila yakuba
 
Y
 
Drosophila ananassae
 
Y
 
Drosophila pseudoobscura pseudoobscura
 
Y
 
Drosophila persimilis
 
Y
 
Drosophila willistoni
 
Y
 
Drosophila virilis
 
Y
 
Drosophila mojavensis
 
Y
 
Drosophila grimshawi
 
Y
 
hideOrthologs in non-Drosophila Dipterans (EOG6DBTNQ)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Aedes aegypti
Yellow fever mosquito 
 
Anopheles gambiae
Malaria mosquito 
 
Culex quinquefasciatus
Southern house mosquito 
 
hideOrthologs in non-Dipteran Insects (EOG6H18R3)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Apis mellifera
Western honey bee 
Amel\GB42000
 
Nasonia vitripennis
Parasitic wasp 
Nvit\Nasvi2EG011498
 
Acromyrmex echinatior
Panamanian leafcutter ant 
Aech\AECH16050
 
Atta cephalotes
Leafcutter ant 
Acep\ACEP21212
 
Camponotus floridanus
Florida carpenter ant 
Cflo\CFLO11834
 
Harpegnathos saltator
Jerdons jumping ant 
Hsal\HSAL16555
 
Linepithema humile
Argentine ant 
Lhum\LH24589
 
Pogonomyrmex barbatus
Red harvester ant 
Pbar\PB27330
 
Acyrthosiphon pisum
Pea aphid 
 
Bombyx mori
Silkmoth 
 
Pediculus humanus
Human body louse 
 
Tribolium castaneum
Red flour beetle 
 
hideOrthologs in non-Insect Arthropods (EOG6KPRS6)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Daphnia pulex
Water flea 
 
Ixodes scapularis
Deer tick 
 
hideOrthologs in non-Arthropod Metazoa (EOG6PCPK6)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Caenorhabditis elegans
Nematode 
 
Strongylocentrotus purpuratus
Purple sea urchin 
 
Danio rerio
Zebrafish 
 
Danio rerio
Zebrafish 
 
Danio rerio
Zebrafish 
 
Danio rerio
Zebrafish 
 
Danio rerio
Zebrafish 
 
Danio rerio
Zebrafish 
 
Xenopus tropicalis
Western clawed frog 
 
Xenopus tropicalis
Western clawed frog 
 
Xenopus tropicalis
Western clawed frog 
 
Xenopus tropicalis
Western clawed frog 
 
Gallus gallus
Domestic chicken 
 
Gallus gallus
Domestic chicken 
 
Mus musculus
House mouse 
 
Mus musculus
House mouse 
 
Mus musculus
House mouse 
 
Mus musculus
House mouse 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Rattus norvegicus
Norway rat 
 
Homo sapiens
Human 
 
Homo sapiens
Human 
 
Homo sapiens
Human 
 
Homo sapiens
Human 
 
hide Human Orthologs (4)
Gene
OMIM
HGNC
hideAAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism
Gene
Drosophila simulans
Drosophila sechellia
Drosophila erecta
Drosophila yakuba
Drosophila ananassae
Drosophila pseudoobscura pseudoobscura
Drosophila persimilis
Drosophila willistoni
Drosophila virilis
Drosophila mojavensis
Drosophila grimshawi
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 48 )
Bloomington
6020
Harvard
Kyoto
108558
VDRC
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 249 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
hide Other Information
hide Discoverer
Byers.
 
hide Etymology
The term "dunce" refers to John Duns Scotus, 13th century opponent to the revival of classical learning.
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Source for merge of: CG10791 CG10792 CG14268
Source for merge of: dnc EG:96G10.7
Additional comments
Annotations CG10791, CG10792, CG14268, CG14267 and CG10797 merged as CG32498 (dnc) in release 3 of the genome annotation.
Source for merge of dnc EG:96G10.7 was sequence comparison (date:000403).
hide Other Comments
dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology.
dnc mutant larval neurons lack a maintained outward current component that is down-regulated by cAMP.
Subsets of dnc and rut neurons display abnormal spontaneous spikes and altered firing patterns in 'giant' neuron cultures. Abnormal spike activity and reduced K+ current remain in dnc rut double mutants suggesting that the opposite effects on cAMP metabolism by dnc and rut do not counterbalance the mutual functional defects. The aberrant spontaneous activity and altered frequency coding in different stimulus paradigms may present problems in the stability and reliability of neural circuits for information processing during certain behavioural tasks, raising the possibility of modulation in neuronal excitability as a cellular mechanisms underlying learning and memory.
Expression of the CrebB-17A repressor in the dnc mutant blocks functional but not structural plasticity.
Mutations of dnc affect habituation of the electrically stimulated giant fibre response.
Phenotypic analysis reveals control of growth cone mobility requires optimal cAMP levels within an operational range.
Fas2 is necessary for the synaptic sprouting induced by increased activity (eag Sh double mutants) or increased cAMP (dnc).
At temperatures ranging from 20oC to 37.5oC temperature sensitive mutants exhibit no effect on the heart rate of larvae.
Injection of Acp70A into mutant virgin females fails to elicit any response in behaviour.
SP injection into dnc mutant females fails to elicit the usual SP response of increased oviposition and decreased receptivity to males.
dnc gene product is preferentially expressed in the mushroom bodies. Cell specific ablation of the mushroom bodies, by hydroxyurea, demonstrates they mediate associative odour learning in flies.
Mutation of dnc is associated with an abnormal pacemaker resetting response and a shortening of circadian period. Mutations selectively alter phase delays with no apparent effects on phase advances of the pacemaker.
P-element mediated introduction of dnc and rat dnc into dnc mutants allows some phenotype rescue and supports the physiological role of the dnc gene product during memory and learning acquisition as opposed to a purely developmental defect as the cause of the dnc phenotype. Rat dnc is capable of partially replacing the function of dnc.
Mutations at stnA show allele-specific interactions with mutations at dnc and shi.
The relationship between structural complexity and functional diversity of the dnc gene has been investigated using the many chromosomal rearrangements in the dnc region. Transcription start sites 4 and 5 are required for female fertility. Transcription start site 3 is important for elevated dnc expression in the mushroom bodies and normal 90 minute memory. Transcription start site 4 is required for general neuropil expression and for normal initial learning.
Behavioural experiments reveal interesting functional properties of the dnc gene that have eluded molecular and biochemical analyses.
P-element mediated introduction of the rat dnc gene into dnc mutants demonstrates that the rat dnc gene has functional similarities to the Drosophila homologue, dnc.
Two electrode voltage clamping studies of third-instar larval muscle, with and without K+-channel blockers suggests that a specific K+ channel conductance might be relevant to the lack of synaptic plasticity at the dnc neuromuscular synapse.
dnc plays a major role in the maternal regulation of embryonic cAMP content.
dnc mutant analysis suggests that the cAMP cascade plays a role in the shaping neuronal connectivity.
In dnc mutants a K+ selective channel, that is activated directly and reversibly by cAMP, has a much higher probability of opening compared to wild type.
dnc phosphodiesterase (PDE) localization has been determined by antibody staining. Results demonstrate that dnc PDE is very concentrated in the neuropil associated with the mushroom body cells.
dnc is structurally complex gene with multiple RNAs exhibiting a heterogeneity of dnc transcripts that result from transcription initiation at multiple sites, alternative splicing and processes that generate different 3' ends.
dnc mutants are defective in a step of the cAMP cascade: they show impaired synaptic facilitation and post-tetanic potentiation as well as abnormal responses to direct application of dibutyryl cAMP. Results suggest that the cAMP cascade plays a role in synaptic facilitation and potentiation and indicate that synaptic plasticity is altered in memory mutants.
Mutations in dnc affect sensory fatigue due to anteronotopleural bristle deflection, not sensory adaptation.
Mutant analysis provides evidence for the participation of a G0-like protein in learning and memory.
Mutations in dnc significantly reduce the females song memory after prestimulation with courtship hums. This suggests a simple sensitization process may be involved with the female pulse song memory (Kyriacou and Hall, Nature 308: 62).
dnc has been cloned and sequenced. Pig1 and Sgs4 are located within the 79kb intron of the dnc gene. Pig1 is transcribed from the opposite strand to dnc and Sgs4.
Df(1)N-71h/Df(1)dm75e19 females survive, even though they are completely deleted for some five bands, including 3D4; such females are defective in learning and are sterile. dncM11-induced sterility partly suppressed by rut (Livingstone, Sziber and Quinn, 1984) and this phenotype of the double mutant used to select two new purported rut alleles, one of which (rut2) also suppresses learning defects associated with dncM14 (Feany, 1990).
 
Gene encodes a cAMP-specific phosphodiesterase. Mutants blocked or impaired in learning, with respect to several of the conditioning tests used on groups of flies or larvae or on individual adults, e.g., those involving odors and electric shocks or sugars (Aceves-Pina and Quinn, 1979; Tempel, Bonini, Dawson and Quinn, 1983; see also Aceves-Pina, Booker, Duerr, Livingstone, Quinn, Smith, Sziber, Tempel, and Tully, 1983), visual stimuli (Folkers, 1982), or various elements of courtship (with respect to tests on mutant males or females, summarized by Hall, 1984); also, dncM14 males have reduced reproductive fitness after exposure to and courtship of immature females, i.e. when mutant males are put, post-training, with mixed female/young male populations (Gailey et al., 1985). dnc females display an increased frequency of mating; it is suggested that this could account for their 50% normal longevity (Bellen and Kiger, 1987). dnc males are not conditioned to avoid virgin females by sequestration with such females in the presence of quinine; wild type males are (Ackerman and Siegel, 1986). dnc mutants apparently learn normally, or nearly so, in certain experiments but have abnormally short memory (e.g., Dudai, 1979; Mariath, 1985); more specifically, modifications of original shock-odor testing system reveal that dnc is defective in short term memory, with long-term memory similar to wild type (Tully and Quinn, 1985); dnc/+ females also memory deficient (Dudai, 1983). Whereas dnc adults seem normal in several general behaviors (Dudai, Jan, Byers, Quinn and Benzer, 1976), the mutant displays aberrant 'centrophobic' behavior [i.e., transient avoidance of the center of an arena displayed by normal adults (Gotz and Biesinger, 1985). Mosaic studies suggest that the focus of dnc/+ function is the brain, even though some learning responses demonstrated by headless flies (Aceves-Pina, Booker, Duerr, Livingstone, Quinn, Smith, Sziber, Tempel, and Tully, 1983). Sensory fatigue associated with an adult mechanosensory neuron, as measured by bristle stimulation, occurs more rapidly than normal in dnc (allele not specified) (Corfas and Dudai, 1990). There is an increased number of mushroom-body axonal fibers in young adults expressing dnc1 or dncM11, which, unlike wild type, decreases over the next few days (Balling, Technau, and Heisenberg, 1987). Mutations or deletions of the locus reduce or eliminate one form of cyclic AMP phosphodiesterase activity; caffeine, an inhibitor of this enzyme, decreases visual learning performance of normal adults and of dnc1 as well, suggesting that the biochemical effects of the drug and the mutation are not identical (Folkers and Spatz, 1984). The effects of dnc mutations on heat stability or Km of this activity indicate that the locus codes for this enzyme (Kauvar, 1982; Davis and Kauvar, 1983); dnc variants also lead to increased levels of cyclic AMP (summarized by Davis and Kauvar, 1983), more specifically, such that most of the excess is in free (vs. bound) nucleotide; both fractions exist in whole-fly homogenates (Friedrich, Solti, Gyurkovicz, 1984). dncM11 affects the level of phosphorylation of the regulatory subunit of the cyclic-AMP-dependent kinase (Devay, Pinter, Yalcin and Friedrich, 1986). Levels of regulatory subunit of cAMP-dependent protein kinase tend to be higher than normal in dnc1 and dnc2 (Muller and Spatz, 1989). dncM11 flies exhibit increased levels of expression of copia (Yun and Davis, 1989). dnc alleles cause varying degrees of female sterility; oocytes of females homozygous for amorphic alleles rarely reach maturity, and for the most part are not oviposited; 90% of the few that are oviposited are fragile, lacking a chorion. That this phenotype is somatic in origin is demonstrated by the observation that homozygous germ-line clones produce morphologically normal eggs; some of these eggs undergo a few abortive nuclear divisions, but they never reach an identifiable stage of oogenesis. The maternal-effect lethality partially suppressible by rut, which reduces adenylate cyclase activity. The earliest defect seen in the embryos produced by dnc rut females occurs soon after fertilization and affects DNA replication and mitosis, prevents nuclear migration and leads to large polyploid nuclei; a later defect prevents cleavage nuclei from migrating into, or dividing in, the posterior region of the egg, affecting the developmental behavior or fate of blastoderm cells. The few surviving offspring of double-mutant females show frequent developmental abnormalities of the second and third thoracic and the first five abdominal segments; these include deficiencies, duplications and transformation of structures; some 15% of the daughters of such females lack one or both ovaries (Livingstone, Sziber and Quinn, 1984; Bellen, Gregory, Olsson, and Kiger, 1987; Bellen and Kiger, 1988).
 
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
hide Synonyms & Secondary IDs ( 16 )
Reported As
Symbol Synonym
CG10792
 
CG10797
CG14267
 
CG14268
 
EG:96G10.7
EG:140G11.4
EG:BACN5I9.2
 
EG:BACN05I09.3
 
Name Synonym
Secondary FlyBase IDs
  • FBgn0024972
  • FBgn0029653
  • FBgn0029654
  • FBgn0029655
  • FBgn0052498
hide References ( 404 )
Generate a list of
List References by type
hide Recent research papers ( 18 )
Fabian et al., 2012, Mol. Ecol. 21(19): 4748--4769
Genome-wide patterns of latitudinal differentiation among populations of Drosophila melanogaster from North America. [FBrf0219505]
Kanellopoulos et al., 2012, J. Neurosci. 32(38): 13111--13124
Learning and memory deficits consequent to reduction of the fragile x mental retardation protein result from metabotropic glutamate receptor-mediated inhibition of cAMP signaling in Drosophila. [FBrf0219485]
Khurana et al., 2012, Behav. Genet. 42(1): 151--161
Olfactory Conditioning in the Third Instar Larvae of Drosophila melanogaster Using Heat Shock Reinforcement. [FBrf0217156]
Kim et al., 2012, Nat. Neurosci. 15(6): 876--883
Contribution of visual and circadian neural circuits to memory for prolonged mating induced by rivals. [FBrf0219349]
Koon and Budnik, 2012, J. Neurosci. 32(18): 6312--6322
Inhibitory control of synaptic and behavioral plasticity by octopaminergic signaling. [FBrf0218256]
Scheunemann et al., 2012, J. Neurosci. 32(48): 17163--17171
Consolidated and Labile Odor Memory Are Separately Encoded within the Drosophila Brain. [FBrf0220097]
Ueda and Wu, 2012, J. Neurogenet. 26(1): 64--81
Cyclic Adenosine Monophosphate Metabolism in Synaptic Growth, Strength, and Precision: Neural and Behavioral Phenotype-Specific Counterbalancing Effects between dnc Phosphodiesterase and rut Adenylyl Cyclase Mutations. [FBrf0217874]
Xu et al., 2012, Genes Brain Behav. 11(6): 727--739
The propensity for consuming ethanol in Drosophila requires rutabaga adenylyl cyclase expression within mushroom body neurons. [FBrf0218967]
Arthaud et al., 2011, PLoS ONE 6(5): e19805
Trade-Off between Toxicity and Signal Detection Orchestrated by Frequency- and Density-Dependent Genes. [FBrf0213771]
Chow et al., 2011, J. Neurosci. 31(42): 15035--15047
An olfactory circuit increases the fidelity of visual behavior. [FBrf0216480]
Evans et al., 2011, PLoS ONE 6(6): e21619
An automated paradigm for Drosophila visual psychophysics. [FBrf0214277]
Guan et al., 2011, Learn. Mem. 18(4): 191--206
Altered gene regulation and synaptic morphology in Drosophila learning and memory mutants. [FBrf0213277]
Guo et al., 2011, Sleep (Rochester) 34(3): 273--281
Go signaling in mushroom bodies regulates sleep in Drosophila. [FBrf0213134]
Kang et al., 2011, PLoS ONE 6(12): e29800
Novel Cytochrome P450, cyp6a17, Is Required for Temperature Preference Behavior in Drosophila. [FBrf0217065]
Koon et al., 2011, Nat. Neurosci. 14(2): 190--199
Autoregulatory and paracrine control of synaptic and behavioral plasticity by octopaminergic signaling. [FBrf0212895]
Lawlor et al., 2011, Hum. Mol. Genet. 20(19): 3757--3768
Double-stranded RNA is pathogenic in Drosophila models of expanded repeat neurodegenerative diseases. [FBrf0215240]
Meiklejohn et al., 2011, PLoS Biol. 9(8): e1001126
Sex Chromosome-Specific Regulation in the Drosophila Male Germline But Little Evidence for Chromosomal Dosage Compensation or Meiotic Inactivation. [FBrf0214756]
Yuan et al., 2011, Science 333(6048): 1458--1462
Light-induced structural and functional plasticity in Drosophila larval visual system. [FBrf0215276]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2011