Gene Dmel\Edg84A

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General Information

Symbol

Dmel\Edg84A

Species

D. melanogaster

Name

Ecdysone-dependent gene 84A

Annotation symbol

CG2345

Feature type

protein_coding_gene

FlyBase ID

FBgn0000552

Gene Model Status

Current

Stock availability

4 publicly available

Also Known As

EDG84, EDG-84, EDG-84A

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

84A1-84A1

Sequence location

3R:2,510,173..2,510,855 [+]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

The gene Ecdysone-dependent gene 84A is referred to in FlyBase by the symbol Dmel\Edg84A (CG2345, FBgn0000552). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: structural constituent of pupal chitin-based cuticle; structural constituent of chitin-based cuticle. The biological processes in which it is involved are not known. 3 alleles are reported. The phenotype of these alleles is annotated with: trichogen cell. It has one annotated transcript and one annotated polypeptide. Protein features are: Insect cuticle protein. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of no expression detected. Peak expression observed during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: No expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1636944_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Edg84A. Gene sequence location is 3R:2510173..2510855.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

All updates

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Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

84A1-84A1

Limits computationally determined from genome sequence between P{PZ}lab⁰¹²⁴¹ and P{PZ}pb⁰⁴⁴⁹⁸

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

84A1-84A1

(determined by in situ hybridisation)

(Fechtel et al., 1988)

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\Edg84A for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Gene model reviewed during 5.50

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

Edg84A-RA

FBtr0081688

NM_079523

622

188

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

Edg84A-PA

FBpp0081186

20.4

188

8.82

NP_524247

AAF54097

Additional Polypeptide Data & Comments

Reported size (kDa)

188 (aa); 18.2 (kD predicted)

(Apple and Fristrom, 1991)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Insect cuticle protein (IPR000618)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

P27780

UniProtKB/TrEMBL

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

regulatory region

FBsf0000435516
3R:2,510,064..2,510,220

evidence=Reporter construct (in vivo)

(Murata et al., 1996, Halfon, 2012.6.19)

regulatory region

FBsf0000435772
3R:2,509,407..2,510,220

evidence=Reporter construct (in vivo)

(Murata et al., 1996, Halfon, 2012.6.19)

regulatory region

FBsf0000435876
3R:2,510,000..2,510,022

evidence=Reporter construct (in vivo)

(Kayashima et al., 2005, Halfon, 2012.6.19)

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

prepupal stage

epidermis

(Fechtel et al., 1989)

Additional Descriptive Data

Edg84A transcripts are detected only in imaginal epidermis. They are detected in 8hr prepupae and reach maximal accumulation in 10hr prepupae. No transcripts are detected in 0-6hr prepupae or 14hr pupae.

(Fechtel et al., 1989)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: No expression detected in any larval or adult organs/tissues.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		3.95
Larval Midgut		1
Larval Hindgut		1.4
Larval Malpighian Tubules		1.4
Larval Fat Body		1.5
Larval Salivary Gland		1.4
Larval Trachea		2.125
Larval Carcass		3.275
Adult Head		1
Adult Eye		1.925
Adult Brain		1.6
Adult Thoracic-Abdominal Ganglion		1.3
Adult Crop		3.3
Adult Midgut		0.9
Adult Hindgut		1.2
Adult Malpighian Tubules		3.1
Adult Fat Body		1.8
Adult Salivary Gland		6.3
Adult Heart		0.8
Adult VirginFemale Spermatheca		1
Adult InseminatedFemale Spermatheca		2
Adult Ovary		0.7
Adult Testis		3
Adult Male Accessory Gland		15.7
Adult Carcass		4.5
Expression Level Scale		None Low

Linear, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		3.95
Larval Midgut		1
Larval Hindgut		1.4
Larval Malpighian Tubules		1.4
Larval Fat Body		1.5
Larval Salivary Gland		1.4
Larval Trachea		2.125
Larval Carcass		3.275
Adult Head		1
Adult Eye		1.925
Adult Brain		1.6
Adult Thoracic-Abdominal Ganglion		1.3
Adult Crop		3.3
Adult Midgut		0.9
Adult Hindgut		1.2
Adult Malpighian Tubules		3.1
Adult Fat Body		1.8
Adult Salivary Gland		6.3
Adult Heart		0.8
Adult VirginFemale Spermatheca		1
Adult InseminatedFemale Spermatheca		2
Adult Ovary		0.7
Adult Testis		3
Adult Male Accessory Gland		15.7
Adult Carcass		4.5
Expression Level Scale		None Low Moderate High

Linear, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		3.95
Larval Midgut		1
Larval Hindgut		1.4
Larval Malpighian Tubules		1.4
Larval Fat Body		1.5
Larval Salivary Gland		1.4
Larval Trachea		2.125
Larval Carcass		3.275
Adult Head		1
Adult Eye		1.925
Adult Brain		1.6
Adult Thoracic-Abdominal Ganglion		1.3
Adult Crop		3.3
Adult Midgut		0.9
Adult Hindgut		1.2
Adult Malpighian Tubules		3.1
Adult Fat Body		1.8
Adult Salivary Gland		6.3
Adult Heart		0.8
Adult VirginFemale Spermatheca		1
Adult InseminatedFemale Spermatheca		2
Adult Ovary		0.7
Adult Testis		3
Adult Male Accessory Gland		15.7
Adult Carcass		4.5
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		3.95
Larval Midgut		1
Larval Hindgut		1.4
Larval Malpighian Tubules		1.4
Larval Fat Body		1.5
Larval Salivary Gland		1.4
Larval Trachea		2.125
Larval Carcass		3.275
Adult Head		1
Adult Eye		1.925
Adult Brain		1.6
Adult Thoracic-Abdominal Ganglion		1.3
Adult Crop		3.3
Adult Midgut		0.9
Adult Hindgut		1.2
Adult Malpighian Tubules		3.1
Adult Fat Body		1.8
Adult Salivary Gland		6.3
Adult Heart		0.8
Adult VirginFemale Spermatheca		1
Adult InseminatedFemale Spermatheca		2
Adult Ovary		0.7
Adult Testis		3
Adult Male Accessory Gland		15.7
Adult Carcass		4.5
Expression Level Scale		Very high

log, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		3.95
Larval Midgut		1
Larval Hindgut		1.4
Larval Malpighian Tubules		1.4
Larval Fat Body		1.5
Larval Salivary Gland		1.4
Larval Trachea		2.125
Larval Carcass		3.275
Adult Head		1
Adult Eye		1.925
Adult Brain		1.6
Adult Thoracic-Abdominal Ganglion		1.3
Adult Crop		3.3
Adult Midgut		0.9
Adult Hindgut		1.2
Adult Malpighian Tubules		3.1
Adult Fat Body		1.8
Adult Salivary Gland		6.3
Adult Heart		0.8
Adult VirginFemale Spermatheca		1
Adult InseminatedFemale Spermatheca		2
Adult Ovary		0.7
Adult Testis		3
Adult Male Accessory Gland		15.7
Adult Carcass		4.5
Expression Level Scale		None Low

log, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		3.95
Larval Midgut		1
Larval Hindgut		1.4
Larval Malpighian Tubules		1.4
Larval Fat Body		1.5
Larval Salivary Gland		1.4
Larval Trachea		2.125
Larval Carcass		3.275
Adult Head		1
Adult Eye		1.925
Adult Brain		1.6
Adult Thoracic-Abdominal Ganglion		1.3
Adult Crop		3.3
Adult Midgut		0.9
Adult Hindgut		1.2
Adult Malpighian Tubules		3.1
Adult Fat Body		1.8
Adult Salivary Gland		6.3
Adult Heart		0.8
Adult VirginFemale Spermatheca		1
Adult InseminatedFemale Spermatheca		2
Adult Ovary		0.7
Adult Testis		3
Adult Male Accessory Gland		15.7
Adult Carcass		4.5
Expression Level Scale		None Low Moderate High

log, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		3.95
Larval Midgut		1
Larval Hindgut		1.4
Larval Malpighian Tubules		1.4
Larval Fat Body		1.5
Larval Salivary Gland		1.4
Larval Trachea		2.125
Larval Carcass		3.275
Adult Head		1
Adult Eye		1.925
Adult Brain		1.6
Adult Thoracic-Abdominal Ganglion		1.3
Adult Crop		3.3
Adult Midgut		0.9
Adult Hindgut		1.2
Adult Malpighian Tubules		3.1
Adult Fat Body		1.8
Adult Salivary Gland		6.3
Adult Heart		0.8
Adult VirginFemale Spermatheca		1
Adult InseminatedFemale Spermatheca		2
Adult Ovary		0.7
Adult Testis		3
Adult Male Accessory Gland		15.7
Adult Carcass		4.5
Expression Level Scale		None Low Moderate High Very high

log, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		3.95
Larval Midgut		1
Larval Hindgut		1.4
Larval Malpighian Tubules		1.4
Larval Fat Body		1.5
Larval Salivary Gland		1.4
Larval Trachea		2.125
Larval Carcass		3.275
Adult Head		1
Adult Eye		1.925
Adult Brain		1.6
Adult Thoracic-Abdominal Ganglion		1.3
Adult Crop		3.3
Adult Midgut		0.9
Adult Hindgut		1.2
Adult Malpighian Tubules		3.1
Adult Fat Body		1.8
Adult Salivary Gland		6.3
Adult Heart		0.8
Adult VirginFemale Spermatheca		1
Adult InseminatedFemale Spermatheca		2
Adult Ovary		0.7
Adult Testis		3
Adult Male Accessory Gland		15.7
Adult Carcass		4.5
Expression Level Scale		None Low Moderate High Very high

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level	Tissue	Adult Expression Level
NA	Head	1
NA	Eye	1.925
NA	Brain	1.6
3.95	Central Nervous System	NA
NA	Thoracic-Abdominal Ganglion	1.3
NA	Crop	3.3
1	Midgut	0.9
1.4	Hindgut	1.2
1.4	Malpighian Tubules	3.1
1.5	Fat Body	1.8
1.4	Salivary Gland	6.3
NA	Heart	0.8
2.125	Trachea	NA
NA	VirginFemale Spermatheca	1
NA	InseminatedFemale Spermatheca	2
NA	Ovary	0.7
NA	Testis	3
NA	Male Accessory Gland	no informative data
3.275	Carcass	4.5

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		0
central nervous system, larvae L3		0
central nervous system, pupae P8		0
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		0
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		0
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		7
carcass, larvae L3 wandering		0
carcass, 1-day adult		0
carcass, 4-day adult		0
carcass, 20-day adult		0
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		0
central nervous system, larvae L3		0
central nervous system, pupae P8		0
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		0
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		0
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		7
carcass, larvae L3 wandering		0
carcass, 1-day adult		0
carcass, 4-day adult		0
carcass, 20-day adult		0
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		0
central nervous system, larvae L3		0
central nervous system, pupae P8		0
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		0
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		0
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		7
carcass, larvae L3 wandering		0
carcass, 1-day adult		0
carcass, 4-day adult		0
carcass, 20-day adult		0
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		0
central nervous system, larvae L3		0
central nervous system, pupae P8		0
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		0
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		0
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		7
carcass, larvae L3 wandering		0
carcass, 1-day adult		0
carcass, 4-day adult		0
carcass, 20-day adult		0
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		0
central nervous system, larvae L3		0
central nervous system, pupae P8		0
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		0
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		0
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		7
carcass, larvae L3 wandering		0
carcass, 1-day adult		0
carcass, 4-day adult		0
carcass, 20-day adult		0
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		0
central nervous system, larvae L3		0
central nervous system, pupae P8		0
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		0
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		0
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		7
carcass, larvae L3 wandering		0
carcass, 1-day adult		0
carcass, 4-day adult		0
carcass, 20-day adult		0
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		0
central nervous system, larvae L3		0
central nervous system, pupae P8		0
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		0
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		0
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		7
carcass, larvae L3 wandering		0
carcass, 1-day adult		0
carcass, 4-day adult		0
carcass, 20-day adult		0
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		0
central nervous system, larvae L3		0
central nervous system, pupae P8		0
head, virgin 1-day female		0
head, virgin 4-day female		0
head, virgin 20-day female		0
head, mated 1-day female		0
head, mated 4-day female		0
head, mated 20-day female		0
head, mated 1-day male		0
head, mated 4-day male		0
head, mated 20-day male		0
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		0
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		7
carcass, larvae L3 wandering		0
carcass, 1-day adult		0
carcass, 4-day adult		0
carcass, 20-day adult		0
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of no expression detected. Peak expression observed during early pupal stages.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		1
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		0
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		0
larva L3 12hr old		0
larva L3 puffstage 1-2		0
larva L3 puffstage 3-6		0
larva L3 puffstage 7-9		0
white prepupae new		0
white prepupae 12hr		1247
white prepupae 24hr		17
pupae 2d postWPP		44
pupae 3d postWPP		7
pupae 4d postWPP		24
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		1
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		0
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		0
larva L3 12hr old		0
larva L3 puffstage 1-2		0
larva L3 puffstage 3-6		0
larva L3 puffstage 7-9		0
white prepupae new		0
white prepupae 12hr		(1247)
white prepupae 24hr		17
pupae 2d postWPP		(44)
pupae 3d postWPP		7
pupae 4d postWPP		24
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		1
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		0
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		0
larva L3 12hr old		0
larva L3 puffstage 1-2		0
larva L3 puffstage 3-6		0
larva L3 puffstage 7-9		0
white prepupae new		0
white prepupae 12hr		(1247)
white prepupae 24hr		17
pupae 2d postWPP		44
pupae 3d postWPP		7
pupae 4d postWPP		24
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		1
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		0
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		0
larva L3 12hr old		0
larva L3 puffstage 1-2		0
larva L3 puffstage 3-6		0
larva L3 puffstage 7-9		0
white prepupae new		0
white prepupae 12hr		1247
white prepupae 24hr		17
pupae 2d postWPP		44
pupae 3d postWPP		7
pupae 4d postWPP		24
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		1
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		0
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		0
larva L3 12hr old		0
larva L3 puffstage 1-2		0
larva L3 puffstage 3-6		0
larva L3 puffstage 7-9		0
white prepupae new		0
white prepupae 12hr		1247
white prepupae 24hr		17
pupae 2d postWPP		44
pupae 3d postWPP		7
pupae 4d postWPP		24
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		1
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		0
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		0
larva L3 12hr old		0
larva L3 puffstage 1-2		0
larva L3 puffstage 3-6		0
larva L3 puffstage 7-9		0
white prepupae new		0
white prepupae 12hr		(1247)
white prepupae 24hr		17
pupae 2d postWPP		(44)
pupae 3d postWPP		7
pupae 4d postWPP		24
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		1
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		0
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		0
larva L3 12hr old		0
larva L3 puffstage 1-2		0
larva L3 puffstage 3-6		0
larva L3 puffstage 7-9		0
white prepupae new		0
white prepupae 12hr		(1247)
white prepupae 24hr		17
pupae 2d postWPP		44
pupae 3d postWPP		7
pupae 4d postWPP		24
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		1
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		0
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		0
larva L3 12hr old		0
larva L3 puffstage 1-2		0
larva L3 puffstage 3-6		0
larva L3 puffstage 7-9		0
white prepupae new		0
white prepupae 12hr		1247
white prepupae 24hr		17
pupae 2d postWPP		44
pupae 3d postWPP		7
pupae 4d postWPP		24
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Treatments RNA-Seq

Expression Clusters

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0000552

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG2345-RA

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

viable, with Scer\GAL4^pnr-MD237

Edg84A^GD14909

Other Phenotypes

Allele

visible, with Scer\GAL4^pnr-MD237

Edg84A^GD14909

Phenotype manifest in

Allele

trichogen cell, with Scer\GAL4^pnr-MD237

Edg84A^GD14909

Classical Alleles ( 1 )

For All Classical Alleles Show

Allele of Edg84A	Class	Mutagen	Stocks	Known lesion
Edg84A^e02715		piggyBac transposase	2	--

Alleles Carried on Transgenic Constructs ( 2 )

For All Alleles Carried on Transgenic Constructs Show

Allele of Edg84A	Class	Mutagen	Stocks	Known lesion
Edg84A^GD14909		in vitro construct - RNAi in vitro construct - regulatory fusion	2	Yes
Edg84A^NIG.2345R		in vitro construct - RNAi in vitro construct - regulatory fusion	0	Yes

Aneuploid Aberrations

Disrupted in

Df(3R)MAP2

(Kaufman et al., 1990)

Df(3R)MAP8

(Kaufman et al., 1990)

Df(3R)MAP11

(Kaufman et al., 1990)

Not disrupted in

Df(3R)Antp-RX2

(Kaufman et al., 1990)

Df(3R)MAP13

(Kaufman et al., 1990)

Df(3R)MAP14

(Kaufman et al., 1990)

Df(3R)pb-X2

(Kaufman et al., 1990)

Df(3R)SCB-XL2

(Kaufman et al., 1990)

Df(3R)WIN1

(Kaufman et al., 1990)

Df(3R)WIN3

(Kaufman et al., 1990)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

reporter construct

UAS construct

Insertions

Type of insertions

Name

Expression data

miscellaneous insertions

PBac{RB}Edg84A^e02715

Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 2 terms )

Molecular Function

CV term

Evidence

References

structural constituent of chitin-based cuticle

inferred from sequence or structural similarity with InterPro:IPR000618

(Willis, 2007.1.3)

inferred from sequence or structural similarity with Pfam:PF00379

(Willis, 2007.1.3)

structural constituent of pupal chitin-based cuticle

inferred from sequence or structural similarity

(Bayer et al., 1996)

non-traceable author statement

(Swiss-Prot Project Members, 1992.8.1)

traceable author statement

(Andres et al., 1993)

Biological Process ( 0 terms)

Cellular Component ( 0 terms)

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

Edg84A allele

Gene

References

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0000552

Orthologs

OrthoDB Orthologs (65) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG60K8KH

Dipteran inclusive ortholog search

No orthologs identified

Insect inclusive ortholog search

EOG6W9H1M

Arthropod inclusive ortholog search

EOG6C2FTR

Metazoa inclusive ortholog search

No orthologs identified

Orthologs in Drosophila Species (EOG60K8KH)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA15355

Drosophila persimilis

Dper\GL21768

Drosophila willistoni

Dwil\GK19215

Drosophila virilis

Dvir\GJ23298

Drosophila grimshawi

Dgri\GH18125

Orthologs in non-Drosophila Dipterans (None identified)

No non-Drosophilid orthologies identified

Orthologs in non-Dipteran Insects (None identified)

No non-Dipteran orthologies identified

Orthologs in non-Insect Arthropods (EOG6C2FTR)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Daphnia pulex

Water flea

Dpux\rbcL

Daphnia pulex

Water flea

Dpux\rbcL

Daphnia pulex

Water flea

Dpux\cytb

Daphnia pulex

Water flea

Dpux\COI

Daphnia pulex

Water flea

Dpux\JGI_V11_223022

Daphnia pulex

Water flea

Dpux\COI

Daphnia pulex

Water flea

Dpux\JGI_V11_44737

Daphnia pulex

Water flea

Dpux\JGI_V11_65439

Daphnia pulex

Water flea

Dpux\JGI_V11_241286

Daphnia pulex

Water flea

Dpux\JGI_V11_239782

Ixodes scapularis

Deer tick

Isca\ISCW017292

Ixodes scapularis

Deer tick

Isca\ISCW009307

Ixodes scapularis

Deer tick

Isca\ISCW016297

Ixodes scapularis

Deer tick

Isca\ISCW016301

Ixodes scapularis

Deer tick

Isca\ISCW016305

Ixodes scapularis

Deer tick

Isca\ISCW020946

Ixodes scapularis

Deer tick

Isca\ISCW010523

Ixodes scapularis

Deer tick

Isca\ISCW012784

Ixodes scapularis

Deer tick

Isca\ISCW019772

Ixodes scapularis

Deer tick

Isca\ISCW020941

Ixodes scapularis

Deer tick

Isca\ISCW008453

Ixodes scapularis

Deer tick

Isca\ISCW016957

Ixodes scapularis

Deer tick

Isca\ISCW020433

Ixodes scapularis

Deer tick

Isca\ISCW001420

Ixodes scapularis

Deer tick

Isca\ISCW017291

Ixodes scapularis

Deer tick

Isca\ISCW009312

Ixodes scapularis

Deer tick

Isca\ISCW022373

Ixodes scapularis

Deer tick

Isca\ISCW010521

Ixodes scapularis

Deer tick

Isca\ISCW009803

Ixodes scapularis

Deer tick

Isca\ISCW007105

Ixodes scapularis

Deer tick

Isca\ISCW016308

Ixodes scapularis

Deer tick

Isca\ISCW024011

Ixodes scapularis

Deer tick

Isca\ISCW019773

Ixodes scapularis

Deer tick

Isca\ISCW010074

Ixodes scapularis

Deer tick

Isca\ISCW020947

Ixodes scapularis

Deer tick

Isca\ISCW017289

Ixodes scapularis

Deer tick

Isca\ISCW017294

Ixodes scapularis

Deer tick

Isca\ISCW007407

Ixodes scapularis

Deer tick

Isca\ISCW020948

Ixodes scapularis

Deer tick

Isca\ISCW016304

Ixodes scapularis

Deer tick

Isca\ISCW019781

Ixodes scapularis

Deer tick

Isca\ISCW017817

Ixodes scapularis

Deer tick

Isca\ISCW011576

Ixodes scapularis

Deer tick

Isca\ISCW024407

Ixodes scapularis

Deer tick

Isca\ISCW001782

Ixodes scapularis

Deer tick

Isca\ISCW009309

Ixodes scapularis

Deer tick

Isca\ISCW002826

Ixodes scapularis

Deer tick

Isca\ISCW002955

Ixodes scapularis

Deer tick

Isca\ISCW016309

Ixodes scapularis

Deer tick

Isca\ISCW013218

Ixodes scapularis

Deer tick

Isca\ISCW016307

Ixodes scapularis

Deer tick

Isca\ISCW016296

Ixodes scapularis

Deer tick

Isca\ISCW003783

Ixodes scapularis

Deer tick

Isca\ISCW010522

Orthologs in non-Arthropod Metazoa (None identified)

No non-Arthropod Metazoa orthologies identified

Human Orthologs (0)

Gene

OMIM

HGNC

AAA Orthologs (10) based on analysis using Dmel annotation version 4.3

Organism

Gene

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA15355

Drosophila persimilis

Dper\GL21768

Drosophila willistoni

Dwil\GK19215

Drosophila virilis

Dvir\GJ23298

Drosophila grimshawi

Dgri\GH18125

Stocks & Reagents

Stocks Listed in FlyBase ( 4 )

Bloomington

18075

w¹¹¹⁸; PBac{RB}Edg84A^e02715/TM6B, Tb¹

Harvard

PBac{RB}Edg84A^e02715

VDRC

v29481

w¹¹¹⁸; P{GD14909}v29481

v29480

w¹¹¹⁸; P{GD14909}v29480/TM3

Genomic Clones ( 2 )

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 1 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

RT03311

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0000552

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

40818

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for identity of: Edg84A CG2345

(Li, 1999.11)

Source for database merge of

Source for merge of: Edg84A cc1

(Ashburner, 1999.2.22)

Additional comments

Other Comments

Expression study results suggest that ftz-f1 governs expression of Edg84A in conjunction with putative tissue-specific regulators.

(Murata et al., 1996)

Temporal profile of gene expression is altered in Eip74EF mutant background.

(Fletcher and Thummel, 1995)

Premature expression of ftz-f1 induces the Edg78E and Edg84A genes which have strong ftz-f1 binding sites upstream of their transcription start sites.

(Ueda et al., 1995)

Ecdysteroid-regulated gene.

(Andres et al., 1993)

The homologs of Antp, ftz, Scr, Dfd, Ama, bcd, zen, pb and lab, but not zen2 are all present in D.pseudoobscura.pseudoobscura, in the same linear order and similarly spaced along the chromosome as in D.melanogaster.

(Randazzo et al., 1993)

Initial characterization of Edg84A suggests the gene encodes a cuticle protein.

(Apple and Fristrom, 1991)

Gene expression is limited to the imaginal epidermis. The spatial and temporal expression is as expected for genes that encode pupal cuticle proteins.

(Fechtel et al., 1989)

mRNA on Northerns: 0.9 kb Identification: Differential screen of a genomic library with cDNA isolated from imaginal discs pulsed with 20-hydroxyecdysone, 20-HE (Fechtel, Natzle, Brown and Fristrom, 1988). Transcripts in imaginal disc tissue, beginning at six to nine hours, following a six-hour 20-HE pulse, but not in the absence or continual presence of 20-HE; mRNA's enriched in membrane-bound polysome fractions of imaginal discs.

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NM_079523

RefSeq (Proteins)

•

NP_524247

DDBJ / EMBL / GenBank

•

Entrez Gene - A searchable database of RefSeq genes.

•

40818

UniProtKB/Swiss-Prot

•

P27780

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Insect cuticle protein (IPR000618)

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0000552

DRSC - Results from RNAi screens.

•

FBgn0000552

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0000552

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG2345-RA

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

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FBgn0000552

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

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40818

modMine - Data generated by the modENCODE project.

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FBgn0000552

REDfly - A database of transcriptional regulatory elements.

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FBgn0000552

Synonyms & Secondary IDs ( 16 )

Reported As

Symbol Synonym

BG:DS00004.8

cc1

(Pfeiffer et al., 1998, )

CG2345

(Whitfield, 2000.7.19, )

DM-EDG84

(Janssens and Gehring, 1999)

DmelEDG84A

(Karouzou et al., 2007)

EDG-84

(Apple, 1999.10.15, Fristrom and Fristrom, 1993)

EDG84

(Iconomidou et al., 1999, Ueda et al., 1995, Apple and Fristrom, 1991)

Edg84

(Bayer et al., 1996)

EDG84A

(Ueda et al., 2002, Zhou and Riddiford, 2001, Lam et al., 1999, Broadus et al., 1999, Ueda et al., 1998, Murata et al., 1996, Kayashima et al., 2005, Chen et al., 2008, Akagi et al., 2013)

EDG-84A

(D'Avino and Thummel, 1998, Rendina et al., 2010)

Edg84A

(Willis, 2007.1.3, Karouzou et al., 2007, Blanco et al., 2010, Karouzou et al., 2007, Cornman, 2009, Negre et al., 2005, Curtis et al., 2007, Japanese National Institute of Genetics, 2012.5.21)

unnamed

(Kaufman et al., 1990)

Name Synonym

cuticle cluster 1

cuticle-like cluster

(Randazzo et al., 1993)

Ecdysone-dependent gene 84A

ecdysone-dependent gene-84A-1

(Martin, 1999.1.14)

Secondary FlyBase IDs

FBgn0004776
FBpp0081186
FBtr0081688

References ( 57 )

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Recent research papers ( 1 )

Akagi et al., 2013, J. Mol. Biol. 425(1): 71--81: The Binding of Multiple Nuclear Receptors to a Single Regulatory Region Is Important for the Proper Expression of EDG84A in Drosophila melanogaster. [FBrf0220406]

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Recent reviews (0)

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