FlyBase Gene Report: Dmel\Edg84A

General Information

Symbol

Dmel\Edg84A

Species

D. melanogaster

Name

Ecdysone-dependent gene 84A

Annotation Symbol

CG2345

Feature Type

protein_coding_gene

FlyBase ID

FBgn0000552

Gene Model Status

Current

Stock Availability

5 publicly available

Gene Summary

Ecdysone-dependent gene 84A (Edg84A) encodes a pupal cuticle protein, assumed to be component of the exocuticle. Edg84A is expressed only in anterior epidermis during the late prepupal period, induced by the transcription factor encoded by ftz-f1. [Date last reviewed: 2019-03-07] (FlyBase Gene Snapshot)

All Summaries

Gene Snapshot
Alliance
Auto summary
Gene Group
UniProtKB
Interactive Fly

Also Known As

EDG84, cc1, EDG-84, EDG-84A

Key Links

Genomic Location

Cytogenetic map

84A1-84A1

Sequence location

3R:6,684,445..6,685,157 [+]

Recombination map

3-48

RefSeq locus

NT_033777 REGION:6684445..6685157

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

Gene Ontology (GO) Annotations (5 terms)

Molecular Function (2 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

enables structural constituent of chitin-based larval cuticle

inferred from sequence model

(Karouzou et al., 2007)

enables structural constituent of pupal chitin-based cuticle

traceable author statement

(Andres et al., 1993, Apple and Fristrom, 1991)

Biological Process (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

involved_in chitin-based cuticle development

inferred from sequence model

(Karouzou et al., 2007)

Cellular Component (2 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

located_in chitin-based extracellular matrix

inferred from sequence model

(Karouzou et al., 2007)

is_active_in extracellular matrix

inferred from biological aspect of ancestor with PANTHER:PTN000955699

(GO Reference Genome Project, 2011-)

Gene Group (FlyBase)

CPR CUTICLE PROTEIN FAMILY

Protein Family (UniProt)

Protein Signatures (InterPro)

Summaries

Gene Snapshot

Gene Group (FlyBase)

CPR CUTICLE PROTEIN FAMILY -: The largest cuticle protein family, the CPR family, contain a 35 amino acid R&R consensus (named after Rebers and Riddiford, PMID:2462055), which in an extended form has been shown to bind chitin (PMID:15475300). (Adapted from FBrf0242484.)

Protein Function (UniProtKB)

Component of the cuticle of the pupa of fruit fly.

(UniProt, P27780)

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\Edg84A for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry P27780)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Gene model reviewed during 5.50

Gene model reviewed during 6.02

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

Edg84A-RA

FBtr0081688

NM_079523

652

188

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

Edg84A-PA

FBpp0081186

20.4

188

8.82

P27780

NP_524247

AAF54097

Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments

Reported size (kDa)

188 (aa); 18.2 (kD predicted)

(Apple and Fristrom, 1991)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

P27780

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Edg84A using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Edg84A_1

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

-0.19

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

prepupal stage

epidermis

(Fechtel et al., 1989)

Additional Descriptive Data

Edg84A transcripts are detected only in imaginal epidermis. They are detected in 8hr prepupae and reach maximal accumulation in 10hr prepupae. No transcripts are detected in 0-6hr prepupae or 14hr pupae.

(Fechtel et al., 1989)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

Reporter: P{EDG84LZ}

Stage

Tissue/Position (including subcellular localization)

Reference

prepupal stage P4(ii)

larval head

(Akagi et al., 2013)

larval thorax

(Akagi et al., 2013)

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\Edg84A in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\Edg84A

View exonic expression by tissue for Dmel\Edg84A

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0000552

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

40818/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0000552

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0000552

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0000552

Flygut - An atlas of the Drosophila adult midgut

FBgn0000552

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 1 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 3 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of Edg84A

Transgenic constructs containing regulatory region of Edg84A

Aberrations (Deficiencies and Duplications) ( 10 )

Inferred from experimentation ( 10 )

Gene disrupted in

Df(3R)MAP2

(Kaufman et al., 1990)

Df(3R)MAP8

(Kaufman et al., 1990)

Df(3R)MAP11

(Kaufman et al., 1990)

Gene not disrupted in

Df(3R)Antp-RX2

(Kaufman et al., 1990)

Df(3R)MAP13

(Kaufman et al., 1990)

Df(3R)MAP14

(Kaufman et al., 1990)

Df(3R)pb-X2

(Kaufman et al., 1990)

Df(3R)SCB-XL2

(Kaufman et al., 1990)

Df(3R)WIN1

(Kaufman et al., 1990)

Df(3R)WIN3

(Kaufman et al., 1990)

Inferred from location ( 7 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

Edg84A^GD14909

viable, with Scer\GAL4^Mef2.PR

Edg84A^GD14909

viable, with Scer\GAL4^pnr-MD237

Edg84A^GD14909

Other Phenotypes

Allele

visible, with Scer\GAL4^pnr-MD237

Edg84A^GD14909

Phenotype manifest in

Allele

trichogen cell, with Scer\GAL4^pnr-MD237

Edg84A^GD14909

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (2)

Hsap\DNM3

1 of 14

Yes

Hsap\NOTCH2

1 of 14

Yes

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (0)

Mus musculus (laboratory mouse) (2)

Mmus\Cntrl

1 of 14

Yes

Mmus\Itsn1

1 of 14

Yes

Xenopus tropicalis (Western clawed frog) (0)

Danio rerio (Zebrafish) (0)

Caenorhabditis elegans (Nematode, roundworm) (0)

Anopheles gambiae (African malaria mosquito) (162)

Agam\AgaP_AGAP012795

5 of 12

Yes

Agam\AgaP_AGAP012866

5 of 12

Yes

Agam\CPR1

5 of 12

Yes

Agam\CPR2

5 of 12

Yes

Agam\CPR5

5 of 12

Yes

Agam\CPR6

5 of 12

Yes

Agam\CPR115

5 of 12

Yes

Agam\CPR117

5 of 12

Yes

Agam\CPR121

5 of 12

Yes

Agam\CPR122

5 of 12

Yes

Agam\CPR123

5 of 12

Yes

Agam\CU01_ANOGA

5 of 12

Yes

4 of 12

4 of 12

4 of 12

4 of 12

3 of 12

3 of 12

Yes

Agam\CPR83

3 of 12

Agam\CPR84

3 of 12

Agam\CPR85

3 of 12

Yes

3 of 12

3 of 12

3 of 12

3 of 12

3 of 12

3 of 12

3 of 12

3 of 12

3 of 12

3 of 12

3 of 12

3 of 12

3 of 12

3 of 12

3 of 12

3 of 12

2 of 12

2 of 12

2 of 12

Yes

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

2 of 12

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2 of 12

2 of 12

1 of 12

1 of 12

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1 of 12

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1 of 12

1 of 12

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1 of 12

1 of 12

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1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Yes

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Arabidopsis thaliana (thale-cress) (0)

Saccharomyces cerevisiae (Brewer's yeast) (0)

Schizosaccharomyces pombe (Fission yeast) (0)

Escherichia coli (enterobacterium) (0)

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:Edg84A. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (98)

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

7 of 13

6 of 13

5 of 13

5 of 13

4 of 13

4 of 13

4 of 13

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4 of 13

3 of 13

3 of 13

3 of 13

3 of 13

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3 of 13

3 of 13

3 of 13

3 of 13

3 of 13

2 of 13

2 of 13

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1 of 13

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1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Pcp

1 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

Interaction Browsers

Summary of Genetic Interactions

Interaction Browsers

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0000552

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyBase

External Links

External Data

Linkouts

Class of Gene

nuclear_gene

protein_coding_gene

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

3-48

Cytogenetic map

84A1-84A1

Sequence location

3R:6,684,445..6,685,157 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

84A1-84A1

Limits computationally determined from genome sequence between P{PZ}lab⁰¹²⁴¹ and P{PZ}pb⁰⁴⁴⁹⁸

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

84A1-84A1

(determined by in situ hybridisation)

(Fechtel et al., 1988)

Experimentally Determined Recombination Data

Location

3-48

(FlyBase, 2016)

3-44.2

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (5)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

18075

w¹¹¹⁸; PBac{RB}Edg84A^e02715/TM6B, Tb¹

NIG-Fly

2345R-1

P{NIG.2345R}1

HMJ22442

y¹ v¹; P{TRiP.HMJ22442}attP40/CyO

VDRC

v29481

w¹¹¹⁸; P{GD14909}v29481

v29480

w¹¹¹⁸; P{GD14909}v29480/TM3

Genomic Clones (23)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (2)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

Other clones

RT03311

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0000552

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

IP02215

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0000552

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

Expression study results suggest that ftz-f1 governs expression of Edg84A in conjunction with putative tissue-specific regulators.

(Murata et al., 1996)

Temporal profile of gene expression is altered in Eip74EF mutant background.

(Fletcher and Thummel, 1995)

Premature expression of ftz-f1 induces the Edg78E and Edg84A genes which have strong ftz-f1 binding sites upstream of their transcription start sites.

(Ueda et al., 1995)

Ecdysteroid-regulated gene.

(Andres et al., 1993)

The homologs of Antp, ftz, Scr, Dfd, Ama, bcd, zen, pb and lab, but not zen2 are all present in D.pseudoobscura.pseudoobscura, in the same linear order and similarly spaced along the chromosome as in D.melanogaster.

(Randazzo et al., 1993)

Initial characterization of Edg84A suggests the gene encodes a cuticle protein.

(Apple and Fristrom, 1991)

Gene expression is limited to the imaginal epidermis. The spatial and temporal expression is as expected for genes that encode pupal cuticle proteins.

(Fechtel et al., 1989)

mRNA on Northerns: 0.9 kb Identification: Differential screen of a genomic library with cDNA isolated from imaginal discs pulsed with 20-hydroxyecdysone, 20-HE (Fechtel, Natzle, Brown and Fristrom, 1988). Transcripts in imaginal disc tissue, beginning at six to nine hours, following a six-hour 20-HE pulse, but not in the absence or continual presence of 20-HE; mRNA's enriched in membrane-bound polysome fractions of imaginal discs.

Relationship to Other Genes

Source for database merge of

Source for merge of: Edg84A cc1

(Ashburner, 1999.2.22)

Additional comments

Nomenclature History

Source for database identify of

Source for identity of: Edg84A CG2345

(Li, 1999.11)

Nomenclature comments

Etymology

Synonyms and Secondary IDs (15)

Reported As

Symbol Synonym

BG:DS00004.8

CG2345

(National Institute of Genetics Fly Stocks, 2023-, Hosono et al., 2015, Whitfield, 2000.7.19)

DM-EDG84

(Janssens and Gehring, 1999)

DmelEDG84A

(Karouzou et al., 2007)

EDG-84

(Apple, 1999.10.15, Fristrom and Fristrom, 1993)

EDG-84A

(Rendina et al., 2010, D'Avino and Thummel, 1998)

EDG84

(Iconomidou et al., 1999, Andersen et al., 1995, Ueda et al., 1995, Apple and Fristrom, 1991)

EDG84A

(Akagi et al., 2013, Chen et al., 2008, Kayashima et al., 2005, Ueda et al., 2002, Zhou and Riddiford, 2001, Broadus et al., 1999, Lam et al., 1999, Ueda et al., 1998, Murata et al., 1996)

Edg84

(Jones et al., 2013, Bayer et al., 1996)

Edg84A

(Pignataro et al., 2024, Yue et al., 2020, Xie et al., 2015, Vanden Broeck et al., 2013, Japanese National Institute of Genetics, 2012.5.21, Blanco et al., 2010, Cornman, 2009, Chen et al., 2008, Curtis et al., 2007, Karouzou et al., 2007, Karouzou et al., 2007, Willis, 2007.1.3, Negre et al., 2005)

cc1

(Pfeiffer et al., 1998)

Name Synonyms

Ecdysone-dependent gene 84A

cuticle cluster 1

cuticle-like cluster

(Randazzo et al., 1993)

ecdysone-dependent gene-84A-1

(Martin, 1999.1.14)

Secondary FlyBase IDs

FBgn0004776

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 31 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

40818

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

P27780

UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information

P27780

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

P27780

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0000552

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

40818/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0000552

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0000552

FlyMine - An integrated database for Drosophila genomics

FBgn0000552

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG2345

MARRVEL_MODEL - MARRVEL (model organism gene)

40818

Linkouts

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0000552

DroID - A comprehensive database of gene and protein interactions.

FBgn0000552

DRSC - Results frm RNAi screens

FBgn0000552

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Edg84A_1

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0000552

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0000552

Flygut - An atlas of the Drosophila adult midgut

FBgn0000552

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

References (72)

The following external sites may use different assemblies or annotations than FlyBase.

-0.19

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