A Database of Drosophila Genes & Genomes

FB2008_07, released August 8, 2008
 

Gene Dmel\elav

General Information
SymbolDmel\elavSpeciesD. melanogaster
Nameembryonic lethal, abnormal visionAnnotation symbolCG4262
Feature typeprotein_coding_geneFlyBase IDFBgn0000570
Created / Updated2005-01-10/2007-08-06
Genomic Location
Chromosome (arm)XRecombination map
Cytogenetic map1B7-1B8Sequence locationX:410,878..417,259 [-]
Map ( GBrowse ) detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene embryonic lethal, abnormal vision is referred to in FlyBase by the symbol elav (CG4262, FBgn0000570). It has the cytological map location 1B7-1B8. Its sequence location is X:410878..417259. Its molecular function is described as: mRNA binding; RNA binding; nucleotide binding. It is involved in the biological processes: RNA metabolic process; nervous system development; negative regulation of mRNA 3'-end processing. 67 alleles are reported. The phenotypes of these alleles are annotated with: eye; retina; photoreceptor cell; optic lobe; wing; rhabdomere; optic chiasma; medulla. It has 3 annotated transcripts and 3 annotated polypeptides.

External Summaries
hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
elav: embryonic lethal, abnormal vision (J. C. Hall)
Embryonic lethal, or in the case of viable and ostensibly hypomorphic alleles, displays poor jumping and flying ability plus aberrant visual physiology and behavior. No morphological abnormalities visible in sections of dying embryos (elav1, elav2, or elav3); however, whole-mount embryos show periodic interruptions in the longitudinal connectives of the CNS and missing commissures especially the posterior ones (Jimenez and Campos-Ortega). elavts1 allows survival to adult stage at 19-25 but viability is reduced and adults usually die soon after eclosion; viability after rearing at 30 is very low and newly emerged adults show poor coordination and die soon; this temperature-sensitive allele also causes morphological abnormalities in the brain, especially in the visual system (after postembryonic shift from 19 to 30 or even following all development at low-temperature); optic chiasma is abnormal and second order optic lobe (medulla) is rotated to aberrant position (Campos et al., 1985); when elavts1 raised at 30, surface of eye is rough and photoreceptor layer abnormal in sections (Campos et al., 1985). Another temperature-sensitive allele elav19 also induces abnormalities of visual system (Homyk et al., 1985); rearing at 29 or high-temperature pulses delivered to pupae, raised otherwise at 20, causes vacuolization of photoreceptors and disorganization of rhabdomeres; high-temperature rearing or pupal pulsing induces severe optic lobe defects (absence of size reduction); electroretinograms of this mutant, raised at high-temperature, are missing light-on and light-off transient spikes (also seen after low-temperature rearing) and have reduction of ERG photoreceptor potential; amplitude of this potential also deteriorates as does deep pseudopupil when adults treated at high-temperature after low-temperature rearing; mosaic analysis (Campos et al., 1985) of elav1 reveals autonomously induced defects in eye morphology, but no effects on other imaginal disc derivatives, and suggests both directly induced defects in optic lobe development, as well as inductively caused CNS defects mediated through expression of this mutation in the eye (i. e., such that the visual system's ganglia are genotypically normal). Lethal "focusing" in these mosaics suggests influence of gene on derivatives of ventral blastoderm. In studies of viable alleles, elav19 and elav20, both of which are temperature-sensitive, flying and jumping ability shown to be especially aberrant after rearing at 29; wing position also aberrant; elavts1 most severe, including having no optomotor response when raised at high (or even low) temperature; temperature-sensitive period for aberrant wing posture in elav19 extends from larval to pupal period (Homyk and Grigliatti). An antibody specific to neuronal nuclei fails to stain neurons of elav-deficient embryos; however, the quantity of antigen does not respond to the number of elav+ genes present (Bier, Ackerman, Barbel, Jan and Jan, 1988, Science 240: 913-16). elav transcripts detected in all postmitotic neurons, from their birth; not seen in embryonic or larval neuroblasts. Also seen in larval eye discs, adult retinas and Johnston's organ of the antennae.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
1B7-1B8  
Limits computationally determined from genome sequence between P{EP}svrEP356&P{EP}argEP452 and P{EP}DreddEP1412&P{EP}Suv4-20EP1216a  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
1B7-1B10
(determined by in situ hybridisation)  
1B7-1B10
(determined by in situ hybridisation)  
1B5-1B9
(determined by in situ hybridisation)  
1B4-1B9
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Molecular Map Data
Gene Order (in direction of increasing cytology)
References
In direction of increasing cytology: arg+ elav- arg+
Gene Order (overall orientation not stated)
References
hide Gene Model & Products
Please see the GBrowse view of Dmel\elav for information on other features
detailed view FBtr0070088 FBtr0100254 FBtr0114366 FBtr0070091 FBpp0070083 FBpp0112915 FBpp0099643 FBpp0070086 FBti0015667 FBti0015690 FBti0048930 FBti0013309 FBti0053754 FBti0066799 FBti0055391 FBti0059417 FBti0055580 FBti0069614 FBti0037307 FBti0039579 FBti0007373 FBti0007317 FBti0068633 FBti0030334 FBti0023123 FBti0034905 FBti0053914 FBti0029719 FBti0059393 FBti0029896 FBti0029973 FBti0033993 FBti0033758 FBti0035206 FBti0027947 FBti0070612 FBti0072036 FBti0068706 FBti0069179 FBti0035022 FBti0099879 FBti0030211 FBti0013429 FBti0071928
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0070091
  2896
  483
FBtr0100254
  2604
  479
FBtr0114366
 
  2639
  479
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kD)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0070086  
50.8  
483  
9.40  
FBpp0099643  
50.3  
479  
9.56  
FBpp0112915  
50.3  
479  
9.56  
 
 
Additional Polypeptide Data & Comments
Reported size (kD)
483 (aa); 50 kD (kD predicted)
50 (kD observed)
483 (aa); 50 (kD observed)
Comments
External Data
Linkouts
PANTHER - Protein classification by function, families, and pathways
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
Maps to
Does NOT map to
Identified with
hide Mapped Features & Mutations
Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here
Type
Symbol & Location
Additional Notes
References
aberration junction
Df(1)yT7-263.bk2
X:411,089..415,899
comment=The deficiency breakpoint maps to an EcoRI- EcoRI restriction fragment.
evidence=experimental
linked_to=EcoRI-EcoRI_rfrag
aberration junction
Df(1)yT6-437.bk2
X:411,089..415,899
evidence=experimental
linked_to=EcoRI-EcoRI_rfrag
comment=The deficiency breakpoint maps to an EcoRI- EcoRI restriction fragment.
aberration junction
In(1)elav[4].bk2
X:411,089..415,899
evidence=experimental
linked_to=EcoRI-EcoRI_rfrag
comment=The inversion breakpoint maps to an EcoRI- EcoRI restriction fragment.
point mutation
reported_na_change=G?A
evidence=experimental
na_change=G374810A
reported_pr_change=W419@
pr_change=W415|elav-PB,W419|elav-PA
point mutation
reported_na_change=G?A
evidence=experimental
na_change=G374809A
pr_change=W415|elav-PB,W419|elav-PA
reported_pr_change=W419@
point mutation
reported_na_change=G?A
evidence=experimental
na_change=G374789A
pr_change=G422E|elav-PB,G426E|elav-PA
reported_pr_change=G426E
regulatory region
elav-reg_element-1
X:417,019..417,351
comment=region required for the neural specificity of elav expression in the embryonic nervous system
evidence=experimental
rescue fragment
comment=reported as coordinates 757 to 9285 of Acc. GB:M21153
evidence=experimental
rescue fragment
elav[+t15.5]
X:404,207..419,606
evidence=experimental
linked_to=PstI-BamHI_rfrag
rescue fragment
elav[+t13.5]
X:404,207..417,835
evidence=experimental
linked_to=XbaI-BamHI_rfrag
hide External Data
Linkouts
DEDB - Drosophila exon database: splicing graphs
Crossreferences
hide Expression Data
FlyBase-Curated Data
Transcript and
Protein data
Please see the FlyBase Gene Expression Report for details of gene expression from the literature.
hide Summary of Transcript Expression
Stage
Tissue/Position
Reference
 embryonic stage | stage 13-14
 dorsal ectoderm
 embryonic stage| 6-18 hr
 embryonic stage
 adult stage
 Johnston\\\'s organ
 larval stage | third instar
 ventral ganglion
 embryonic stage | stage 11-14
 embryonic central nervous system | presumptive
 embryonic stage | 6-18 hr
 embryonic stage | 6-12 hr
 embryonic nervous system
 larval stage | third instar
 morphogenetic furrow | posterior to
 pupal stage | 96 hr
 thoracic ganglion
 larval stage | third instar
 larval brain
Marker for
    Subcellular Localization
    CV Term
    hide Summary of Polypeptide Expression
    Stage
    Tissue/Position
    Reference
     pupal stage | 12-50 hr
     ocellus | presumptive
     adult stage
     photoreceptor cell R1..8
     adult stage
     adult stage
     pupal stage | 72 hr
     lamina cortex
     pupal stage | 72 hr
     lobula plate cortex
     pupal stage | 12 hr
     eye-antennal disc
     embryonic stage | stage 11-16
     embryonic/larval nervous system
     adult stage
     thoracic ganglion
     pupal stage | 72 hr
     monopolar laminar cell
     larval stage | third instar
     larval brain
     pupal stage | 72 hr
     thoracic ganglion
     embryonic stage | stage 13-15
     peripheral nervous system
     pupal stage | 72 hr
     pupal stage | 72 hr
     medulla cortex
     adult stage
     larval stage | third instar
     eye-antennal disc
     pupal stage-adult stage
     adult brain
     embryonic stage | stage 11-15
     central nervous system
     pupal stage | 72 hr
     adult stage
    Marker for
    Subcellular Localization
    CV Term
    hide Microarray Data
    Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)
    Untitled Document detailed view FBtr0070088 FBtr0100254 FBtr0114366 FBtr0070091
    hide External Data & Images
    Linkouts
    FLIGHT - Cell culture data for RNAi and other high-throughput technologies
    FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
    GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies
    hide Alleles & Phenotypes
    hide Summary of Allele Phenotypes
    Lethality
    Allele
    Other Phenotypes
    Allele
    Sterility
    Allele
    Phenotype manifest in
    Allele
    hide Classical Alleles ( 33 )
    For All Classical Alleles Show

    Allele of elavClassMutagenStocksKnown lesion
    elav100 --
    elav110 --
    elav12hypomorph0 --
    elav130 --
    elav140 --
    elav150 --
    elav160 --
    elav170 --
    elav180 --
    elav190 Yes
    elav1hypomorph0 --
    elav200 Yes
    elav20 --
    elav30 --
    elav42 Yes
    elav5amorph, loss of function0 Yes
    elav60 --
    elav70 --
    elav80 --
    elav950 Yes
    elav90 --
    elavC15514 --
    elavE0 Yes
    elavEY090881 --
    elavFO0 Yes
    elavG00311 --
    elavG03191 --
    elavG0378a1 --
    elavGS10911 Yes
    elavPG1590 --
    elavedr0 Yes
    elavts10 Yes
    elavunspecified
      0 --
      hide Alleles Carried on Transgenic Constructs ( 34 )
      For All Alleles Carried on Transgenic Constructs Show

      Allele of elavClassMutagenStocksKnown lesion
      elav+t13.50 Yes
      elav+t15.50 Yes
      elav+t8.50 Yes
      elav-130 Yes
      elav19.tSa0 Yes
      elav1AGD0 Yes
      elav20.t15.50 Yes
      elav20.tSa0 Yes
      elav2AGD0 Yes
      elav3360 Yes
      elav3390 Yes
      elav3AGD0 Yes
      elavDmORF-1200 Yes
      elavDmORF0 Yes
      elavGD52061 Yes
      elavRBD0 Yes
      elavScer\UAS.cKa0<